These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1120 fasta sequence [CAGATCGCGCAGAGGTTTGACGACGTTGCCGAGGAGGATCAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTGTACAAACCTTGGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACTAGTAGAGAATAATTCAAAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGCTCTTTCTTTTCACGACCGGTTATTCTAGAAAATATANCAAAAATAGTCAATTATGGACAATGGTGGAACAGCGGGAGGCAACAACATACTTAGTCTGAAGAAAACATATCTTAAATATGCAGCAGCTTCAGGTGTTANANCTATTCTCGCCGTAGCACAATCTTTCTCTCTCTGTAAAGAATTTCACTAGTTATATACGGATTTTTATGTTTTTGCTGTTATAGTTTGATTTTGTTTTTCAATTGATTTATTTGTTCGACTTATTTTACATGGTCTTTAATGCTGTGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGATTTGTTGACAGAAATAATTATAAGACCGATGCTACTGATTGATTAAACCTTTTCTCCTTGTATGACAAATGCTTAATTTTGATAGTTTAACTTGCCATAGATTTTAGTTTAACTTGTCATAGATTAGGTGAAATTAATTTTTGTTATTCGTTATTGGTTATTGGTGGTAATATCTATTACTCAATTTCAATAATAGAGTCAATTCAAGAATGTGTAGCTCAGCATTTTATAATTGAATCTAGTGATTCCAACGACAACACAATGTTCCTGTGCCACTAATGATAAAGAAACCTAAAATTAAAAAAAGAAAAGAAAATAAACAATGTCTTCCGTGCATGGAAATGATTTCTGTTACAAACAAGACGGCAAACAATGTATTCGCGTGGTTTTATCTGATGCATAGCATATTACACATTATTTCTATTAATCTCTGTT] [+] EMBL AL696967 [CAGATCGCGCAGAGGTTTGACGACGTTGCCGAGGAGGATCAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTGTACAAACCTTGGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACTAGTAGAGAATAATTCAAAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGCTCTTTCTTTTCACGACCGGTTATTCTAGAAAATATANCAAAAATAGTCAATTATGGACAATGGTGGAACAGCGGGAGGCAACAACATACTTAGTCTGAAGAAAACATATCTTAAATATGCAGCAGCTTCAGGTGTTANANCTATTCTCGCC ] [+] EMBL BX621705 [ ACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGCTCTTT TTTTCACGACCGGTTATTCTAGAAAATATA AAAAAATAGTCAATT TGGACAATGGTGGAACAGCGGGAGGCAACAACATACTTAGT TGAAGAAAACATATCTTAAATATGCAGCAGCTTCA GTGTT TTTTTCTCGCTGTAGCACAATCTTTCTCTCTCTGTAAAGAATTTCACTAGTTATATACGGATTTTTATGTTTTTGCTGTTATAGTTTGATTTTGTTTTTCAATTGATTTATTTGTTCGACTTATTTTACATGGTCTTTAATGCTGTGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGATTTGTTGACAGAAATAATTATAAGACCGATGCTACTGATTGATTAAACCTTTTCTCCTTGTATGACAAATGCTTAATTTTGATAGTTTAACTTGCCATAGATTTTAGTTTAACTTGTCATAGATTAGGTGAAATTAATTTTTGTTATTCGTTATTGGTTATTGGTGGTAATATCTATTACTCAATTTCAATAATAGAGT ] [+] EMBL BM613567 [ taaaTTATTTTACAGGGGCTTTAATGGTGGGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGATTTGTTGACAAAAATAATTATAAAACCGATGCTACTGATT ] [+] EMBL BX609976 [ TATTGGTTATTGGTGGTAATATCTATTACTCAATTTCAATAATAGAGTCAATTCAAGAATGTGTAGCTCAGCATTTTATAATTGAATCTAGTGATTCCAACGACAACACAATGTTCCTGTGCCACTAATGATAAAGAAACCTAAAATTAAAAAAAGAAAAGAAAATAAACAATGTCTTCCGTGCATGGAAATGATTTCTGTTACAAACAAGACGGCAAACAATGTATTCGCGTGGTTTTATCTGATGCATAGCATATTACACATTATTTCTATTAATCTCTGTT] consensusID : consensus_6490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [AGGCAGAATCGGCACGATGGATGACGACGTTTGCCGAGGAAGGCATAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTTACAAACCTTGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACGTAGTAGAGAAGTAATTCAAGAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGGCTCTTGTTGATTNCACGACCGGGTGTATTGCTAGGAAAGATATGANCACAGCACATAGTCAACTTTGGACAAATGGTGGAACAGGCGGGAGGCAACAANCATACTTTAGCTTGAAGAAAACATATCTTTAAGATATGCAAGCAGCCTTCAGTGTATCTNGANTTCTCGCTTGTAGCACAATCTTTTNCATTCTCTCTGGTAAACGAATTTCACTAGTTNAATATAA] [+] EMBL BX468158 [AGGCAGAATCGGCACGATGGATGACGACGTTTGCCGAGGAAGGCATAAAGCTCAGGTATACCCTAACAAAAAATAGATCCTATTACTGCTTACAAACCTTGACCTGATCCTTTTTAACATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCCCTACGTAGTAGAGAAGTAATTCAAGAATATCCCACCTGCATTCTGTTTTATGAATTGTGGTGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACCAAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGGCTCTTGTTGATTNCACGACCGGGTGTATTGCTAGGAAAGATATGANCACAGCACATAGTCAACTTTGGACAAATGGTGGAACAGGCGGGAGGCAACAANCATACTTTAGCTTGAAGAAAACATATCTTTAAGATATGCAAGCAGCCTTCAGTGTATCTNGANTTCTCGCTTGTAGCACAATCTTTTNCATTCTCTCTGGTAAACGAATTTCACTAGTTNAATATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6490#0 ---CAGATCGCGCA-GAGGTTTGACGACGTT-GCCGAGGAGGAT-CAAAGCTCAGGTATA 54 consensus_6490#1 AGGCAGAATCGGCACGATGGATGACGACGTTTGCCGAGGAAGGCATAAAGCTCAGGTATA 60 **** *** ** * ********** ******** * ************** consensus_6490#0 CCCTAACAAAAAATAGATCCTATTACTGCTGTACAAACCTTGGACCTGATCCTTTTTAAC 114 consensus_6490#1 CCCTAACAAAAAATAGATCCTATTACTGCT-TACAAACCTTG-ACCTGATCCTTTTTAAC 118 ****************************** *********** ***************** consensus_6490#0 ATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCC 174 consensus_6490#1 ATTCTCCCACCATCTTAATTTGTTAATGAGGAAGTTACAATTTTTTCTTCATTGATTGCC 178 ************************************************************ consensus_6490#0 CTAC-TAGTAGAGAA-TAATTCAA-AATATCCCACCTGCATTCTGTTTTATGAATTGTGG 231 consensus_6490#1 CTACGTAGTAGAGAAGTAATTCAAGAATATCCCACCTGCATTCTGTTTTATGAATTGTGG 238 **** ********** ******** *********************************** consensus_6490#0 TGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACC 291 consensus_6490#1 TGCAATAAAAAGGAACTTATACTTCGATAGAGACTGGAAGGATAAAACATCACACTAACC 298 ************************************************************ consensus_6490#0 AAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAG-C 350 consensus_6490#1 AAATAATGCAATGAATTGCAATTGAAGGTGCTAATTCAAAAGGATTGCAAAGCACAAGGC 358 ********************************************************** * consensus_6490#0 TCTTTCT--TTTCACGACCGGTTATT---CTAGAAAATATANCAAAA------ATAGTCA 399 consensus_6490#1 TCTTGTTGATTNCACGACCGGGTGTATTGCTAGGAAAGATATGANCACAGCACATAGTCA 418 **** * ** ********* * * **** *** *** * * ******* consensus_6490#0 ATTATGGACAA-TGGTGGAACAG-CGGGAGGCAACAAC-ATACTT-AGTCTGAAGAAAAC 455 consensus_6490#1 ACTTTGGACAAATGGTGGAACAGGCGGGAGGCAACAANCATACTTTAGCTTGAAGAAAAC 478 * * ******* *********** ************* ****** ** ********** consensus_6490#0 ATATCTT--AAATATGCA-GCAGCTTCAGGTGTTANANCTATTCTCGCC-GTAGCACAAT 511 consensus_6490#1 ATATCTTTAAGATATGCAAGCAGCCTTCAGTGTATCTNGANTTCTCGCTTGTAGCACAAT 538 ******* * ******* ***** * **** * ******* ********** consensus_6490#0 CTTTCTCTCTCT-----GTAAA-GAATTTCACTAGTTATATACGGATTTTTATGTTTTTG 565 consensus_6490#1 CTTTTNCATTCTCTCTGGTAAACGAATTTCACTAGTTNAATATAA--------------- 583 **** * *** ***** ************** *** consensus_6490#0 CTGTTATAGTTTGATTTTGTTTTTCAATTGATTTATTTGTTCGACTTATTTTACATGGTC 625 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 TTTAATGCTGTGGAATGACTGATATGTTAATATCTAAACAGATGAATACAAAATTGTTGA 685 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 TTTGTTGACAGAAATAATTATAAGACCGATGCTACTGATTGATTAAACCTTTTCTCCTTG 745 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 TATGACAAATGCTTAATTTTGATAGTTTAACTTGCCATAGATTTTAGTTTAACTTGTCAT 805 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 AGATTAGGTGAAATTAATTTTTGTTATTCGTTATTGGTTATTGGTGGTAATATCTATTAC 865 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 TCAATTTCAATAATAGAGTCAATTCAAGAATGTGTAGCTCAGCATTTTATAATTGAATCT 925 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 AGTGATTCCAACGACAACACAATGTTCCTGTGCCACTAATGATAAAGAAACCTAAAATTA 985 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 AAAAAAGAAAAGAAAATAAACAATGTCTTCCGTGCATGGAAATGATTTCTGTTACAAACA 1045 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 AGACGGCAAACAATGTATTCGCGTGGTTTTATCTGATGCATAGCATATTACACATTATTT 1105 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 CTATTAATCTCTGTT 1120 consensus_6490#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||