cluster # 6493

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Anopheles gambiae
cluster # 6493 cluster # 6493 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6493#0 length = 796 sequences # 4

consensus_6493#1 length = 436 sequences # 1

consensusID : consensus_6493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 796
fasta sequence

                              [CCGCACACTCCTGTTTCGGTTATTTCTTTCTTATTGGCTGGTCCTGTAAAACCCTGAGGTGAGCAAGTATCCGCAAGTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTTACTATTCGACATGTAAAAAGGGGACGAACTGCGAGTACCGCCATGAGCCGGCGGCACTTGGGCATGAGAAGACCTGCAAGCTGTGGGCAGAGGGCAAATGCTACAACCGCACCTGCACGATGCGCCACATGAAGATCGAAAAGCCGCGCTCGGCCACGCCGTGCTTTCGGGAGGATCAGCCGGGCGGATGCCGCAAGCCGCATTGCGTGTTCCAGCACAAGATACCGAAGCCCGCGCAGCCGACGACGAGCAATGTGGGCGTTCCNGTGCAGCCGGCAGCTGCGGNCGCCGCAGCCAACGCAGCAGCCGNCCATCTTATGC]

[+] EMBL BM600192             [CCGCACACTCCTGTTTCGGTTATTTCTTTCTTATTGGCTGGTCCTGTAAAACCCTGAGGTGAGCAAGTATCCGCAAGTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTTACTATTCGACATGTAAAAAGGGGACGAACTGCGAGTACCGCCATGAGCCGGCGGCACTTGGGCATGAGAAGACCTGCAAGCTGTGGGCAGAGGGCAAATGCTACAACCGCACCTGCACGATGCGCCACATGAAGATCGAAAAGCCGCGCTCGGCCACGCCGTGCTTTC                                                                                                                                                         ]
[+] EMBL BX620699             [     CACTCCTGTTTCGGTTATTTCTTTCTTATTGGCTGGTCCTGTAAAACCCTGAGGTGAGCAAGTATCCGCAAGTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTTGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTTACTATTCGACATGTAAAAAGGGGACGAACTGCGAGTACCGCCATGAGCCGGCGGCACTTGGGCATGAGAAGACCT                                                                                                                                                                                                                                                      ]
[+] EMBL BX625398             [        TCCTGTTTCGGTTATTTCTTTCTTATTGGCTGGTCCTGTAAAACCCTGAGGTGAGCAAGTATCCGCAAGTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTTGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTTACTATTCGACATGTAAAAAGGGGACGAACTGCGAGTACCGCCATGAGCCGGCGGCACTTGGGCATGAGAAGACCTGCAAGCTGTGGGCAGAGGGCAAATGCTACAACCGCACCTGCACGATGCGCCACATGAAGATCGAAAAGCCGCGCTCGGCCACGCCGTGCTTCTGGGAGGATCAGCCGGGCGGATGCCGCAAGCCGCATTGCGTGTTCCAGCACAAGATACCGAAGCCCGCGCAGCCGACGACGAGCAATGTGGGCGTTCCNGTGCAGCCGGCAGCTGCGGNCGCCGCAGCCAACGCAGCAGCCGNCCATCTTATGC]
[+] EMBL AGA285908            [                                                                                   TATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTTACTATTCGACATGTAAAAAGGGGACGAACTGCGAGTACCGCCATGAGCCGGCGGCACTTGGGCATGAGAAGACCTGCAAGCTGTGGGCAGAGGGCAAATGCTACAACCGCA CTGCACGATGCGCCAC                                                                                                                                                                                                 ]




>consensus_6493#0
CCGCACACTCCTGTTTCGGTTATTTCTTTCTTATTGGCTGGTCCTGTAAAACCCTGAGGT
GAGCAAGTATCCGCAAGTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAG
AGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTGG
GGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAAC
TCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCT
AGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCA
GCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTG
GTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTTACTAT
TCGACATGTAAAAAGGGGACGAACTGCGAGTACCGCCATGAGCCGGCGGCACTTGGGCAT
GAGAAGACCTGCAAGCTGTGGGCAGAGGGCAAATGCTACAACCGCACCTGCACGATGCGC
CACATGAAGATCGAAAAGCCGCGCTCGGCCACGCCGTGCTTTCGGGAGGATCAGCCGGGC
GGATGCCGCAAGCCGCATTGCGTGTTCCAGCACAAGATACCGAAGCCCGCGCAGCCGACG
ACGAGCAATGTGGGCGTTCCNGTGCAGCCGGCAGCTGCGGNCGCCGCAGCCAACGCAGCA
GCCGNCCATCTTATGC

consensusID : consensus_6493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [GAATCGCCCGAGGCNTGAGGTGAGCAGTATCCGCAAGCTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTT]

[+] EMBL AL932445             [GAATCGCCCGAGGCNTGAGGTGAGCAGTATCCGCAAGCTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTT]




>consensus_6493#1
GAATCGCCCGAGGCNTGAGGTGAGCAGTATCCGCAAGCTTGTGGTATTTTGCGAAGAAAA
GATTACACCACTTCCCCGCAGAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGA
AGTGTTCTTCGCGTGTCGTGGGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTG
CCTGCCAGCCCCGATCGAAACTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACC
ATTTTGCGGCAGCCCCCCTCTAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAA
CTGCCCCGCAGACGAGGTCCAGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAG
CAGCCACCTCGTCGGAAGCTGGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCAC
GATTGCTACTTCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6493#0      CCGCACACTCCTGTTTCGGTTATTTCTTTCTTATTGGCTGGTCCTGTAAAACCCTGAGGT 60
consensus_6493#1      ---------------------------------------GAATCGCCCGAGGCNTGAGGT 21
                                                             *   *     *  * ******

consensus_6493#0      GAGCAAGTATCCGCAAG-TTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCA 119
consensus_6493#1      GAGCA-GTATCCGCAAGCTTGTGGTATTTTGCGAAGAAAAGATTACACCACTTCCCCGCA 80
                      ***** *********** ******************************************

consensus_6493#0      GAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTG 179
consensus_6493#1      GAGGGAACGTCTTGCCAAGCGTCCGCTTGGAGCAGTGTGAAGTGTTCTTCGCGTGTCGTG 140
                      ************************************************************

consensus_6493#0      GGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAA 239
consensus_6493#1      GGGGAAGGTGGGAAAAAGAAAGTGGCCGTGTAAAGGTTTGCCTGCCAGCCCCGATCGAAA 200
                      ************************************************************

consensus_6493#0      CTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTC 299
consensus_6493#1      CTCGACGTCCATTGGTGCGGCCTGCGAGACGCCATCGACCATTTTGCGGCAGCCCCCCTC 260
                      ************************************************************

consensus_6493#0      TAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCC 359
consensus_6493#1      TAGATCAAAAGCACTCAAGACGCCGATCGTAGCCGAGAAACTGCCCCGCAGACGAGGTCC 320
                      ************************************************************

consensus_6493#0      AGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCT 419
consensus_6493#1      AGCTTTTGGCTCAAAAATTGCTCTTCGGTCGAAAAGGCAGCAGCCACCTCGTCGGAAGCT 380
                      ************************************************************

consensus_6493#0      GGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTTACTA 479
consensus_6493#1      GGTCCATCCTCCATTTATGGACCTTCCGAGGAACCTGCACGATTGCTACTTCTTTT---- 436
                      ********************************************************    

consensus_6493#0      TTCGACATGTAAAAAGGGGACGAACTGCGAGTACCGCCATGAGCCGGCGGCACTTGGGCA 539
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      TGAGAAGACCTGCAAGCTGTGGGCAGAGGGCAAATGCTACAACCGCACCTGCACGATGCG 599
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      CCACATGAAGATCGAAAAGCCGCGCTCGGCCACGCCGTGCTTTCGGGAGGATCAGCCGGG 659
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      CGGATGCCGCAAGCCGCATTGCGTGTTCCAGCACAAGATACCGAAGCCCGCGCAGCCGAC 719
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      GACGAGCAATGTGGGCGTTCCNGTGCAGCCGGCAGCTGCGGNCGCCGCAGCCAACGCAGC 779
consensus_6493#1      ------------------------------------------------------------
                                                                                  

consensus_6493#0      AGCCGNCCATCTTATGC 796
consensus_6493#1      -----------------