cluster # 650

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Anopheles gambiae
cluster # 650 cluster # 650 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_650#0 length = 878 sequences # 1

consensus_650#1 length = 658 sequences # 1

consensusID : consensus_650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 878
fasta sequence

                              [GCAAGAATCGGCACGAGGGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACAGCCCTCGATGAAGCAGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGCATTTCTGCTGCTGCTGCTGCTGGCTGGAAGAGGTGGGATCGCTAAGAAAGAAGGAGCTAANTTTAGGAAACCAGAACAGGGGTGAAATGATTACTTGTGTGTGTGTATGCGGTACTACTTTACACTGACATAGTACACAAAGGGGCAAATGGGAGTTGAAAGCCGGAATCCATTTTGCAAGAAACCGCATTTGGGACCCAGAAATTACCGGATTCGACCGAAAAGCCTGGGTTGCCCNTGGTACCTGGATTCCCCTTTAATCGGGGACACTNCNAAAGGACAGTAGAGCG]

[+] EMBL BX467847             [GCAAGAATCGGCACGAGGGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACAGCCCTCGATGAAGCAGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGCATTTCTGCTGCTGCTGCTGCTGGCTGGAAGAGGTGGGATCGCTAAGAAAGAAGGAGCTAANTTTAGGAAACCAGAACAGGGGTGAAATGATTACTTGTGTGTGTGTATGCGGTACTACTTTACACTGACATAGTACACAAAGGGGCAAATGGGAGTTGAAAGCCGGAATCCATTTTGCAAGAAACCGCATTTGGGACCCAGAAATTACCGGATTCGACCGAAAAGCCTGGGTTGCCCNTGGTACCTGGATTCCCCTTTAATCGGGGACACTNCNAAAGGACAGTAGAGCG]




>consensus_650#0
GCAAGAATCGGCACGAGGGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGT
CCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCG
ATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCAC
GTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGT
GGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGAC
GAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTC
GTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCC
GGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTAT
GTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACAGC
CCTCGATGAAGCAGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGCATTTCTGCTGCT
GCTGCTGCTGGCTGGAAGAGGTGGGATCGCTAAGAAAGAAGGAGCTAANTTTAGGAAACC
AGAACAGGGGTGAAATGATTACTTGTGTGTGTGTATGCGGTACTACTTTACACTGACATA
GTACACAAAGGGGCAAATGGGAGTTGAAAGCCGGAATCCATTTTGCAAGAAACCGCATTT
GGGACCCAGAAATTACCGGATTCGACCGAAAAGCCTGGGTTGCCCNTGGTACCTGGATTC
CCCTTTAATCGGGGACACTNCNAAAGGACAGTAGAGCG

consensusID : consensus_650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [TGNCCCAAATCAATTCCCGCACTTGCGCCACCCANTCGCACGCCCAATAGTTCTCCACCAGCCGTACCCGGCGCAGGGCCGGTGCAAAGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACGCCCTCGATGAAGCAGGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGC]

[-] EMBL BX627210             [TGNCCCAAATCAATTCCCGCACTTGCGCCACCCANTCGCACGCCCAATAGTTCTCCACCAGCCGTACCCGGCGCAGGGCCGGTGCAAAGCGGGGGAAAAACTCAATCCGCCGCAGCTGGTTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCCGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGCCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGTAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGTGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGGAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGAAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCTGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAAAGGCGACGCCCTCGATGAAGCAGGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGC]




>consensus_650#1
TGNCCCAAATCAATTCCCGCACTTGCGCCACCCANTCGCACGCCCAATAGTTCTCCACCA
GCCGTACCCGGCGCAGGGCCGGTGCAAAGCGGGGGAAAAACTCAATCCGCCGCAGCTGGT
TGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGCC
GTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAGC
CGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGGT
AGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGGT
GTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGGG
AGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGGA
AGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCCT
GCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCAA
AGGCGACGCCCTCGATGAAGCAGGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_650#0      ------------------------------------------------------------
consensus_650#1      TGNCCCAAATCAATTCCCGCACTTGCGCCACCCANTCGCACGCCCAATAGTTCTCCACCA 60
                                                                                 

consensus_650#0      ----------GCA-AGAATCGGCACGAGGGCGGGGGAAAAACTCAATCCGCCGCAGCTGG 49
consensus_650#1      GCCGTACCCGGCGCAGGGCCGGTGCAAAG-CGGGGGAAAAACTCAATCCGCCGCAGCTGG 119
                               **  **   ***  * * * ******************************

consensus_650#0      TTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGC 109
consensus_650#1      TTGTGGTTGGTCCAGAAGTTTTCCAGCCGCACCAGCCGCAGGGACGCGTGAACGTCGAGC 179
                     ************************************************************

consensus_650#0      CGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAG 169
consensus_650#1      CGTGTGATCCGATTGCCCGAAAGGTCGAGCACCAGCAGGCCGGCCATCGGTTCGAACCAG 239
                     ************************************************************

consensus_650#0      CCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGG 229
consensus_650#1      CCGAGCTGCACGTGCTGCAGCCGATTGTTGGACAGGTCGAGCATGGACAGCCCGGTCAGG 299
                     ************************************************************

consensus_650#0      TAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGG 289
consensus_650#1      TAGCGCACGGTGGGTGGAATGACCGACAGCGGGTTTCCGGTGATGATGAGCGTGTTGAGG 359
                     ************************************************************

consensus_650#0      TGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGG 349
consensus_650#1      TGTCGATTGACGAGCGGTGCGACGGCCAGCTCCCGCAGCTCGGTGGCGTCGATGCGAAGG 419
                     ************************************************************

consensus_650#0      GAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGG 409
consensus_650#1      GAGCGCAGCTCGTCCGAGCGGAAGGTAAGCGCCGGAATGATGCTGCCCTTCAGCGTTAGG 479
                     ************************************************************

consensus_650#0      AAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCC 469
consensus_650#1      AAGACCGTCCCGGGCAGTGCATCGAACAGATGGGGCGCGAAGTGTAGAATTTCACTCGCC 539
                     ************************************************************

consensus_650#0      TGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCA 529
consensus_650#1      TGCATAATTATGTGCTTTGCCGGGGGGAAGATGGTTAGGTACTCGTCGGCGGTGGATTCA 599
                     ************************************************************

consensus_650#0      AAGGCGACAGCCCTCGATGAAGCAG-TGGAGTTGGGCTGCACACGGGAGCATTCGATCGC 588
consensus_650#1      AAGGCGAC-GCCCTCGATGAAGCAGGTGGAGTTGGGCTGCACACGGGAGCATTCGATCGC 658
                     ******** **************** **********************************

consensus_650#0      ATTTCTGCTGCTGCTGCTGCTGGCTGGAAGAGGTGGGATCGCTAAGAAAGAAGGAGCTAA 648
consensus_650#1      ------------------------------------------------------------
                                                                                 

consensus_650#0      NTTTAGGAAACCAGAACAGGGGTGAAATGATTACTTGTGTGTGTGTATGCGGTACTACTT 708
consensus_650#1      ------------------------------------------------------------
                                                                                 

consensus_650#0      TACACTGACATAGTACACAAAGGGGCAAATGGGAGTTGAAAGCCGGAATCCATTTTGCAA 768
consensus_650#1      ------------------------------------------------------------
                                                                                 

consensus_650#0      GAAACCGCATTTGGGACCCAGAAATTACCGGATTCGACCGAAAAGCCTGGGTTGCCCNTG 828
consensus_650#1      ------------------------------------------------------------
                                                                                 

consensus_650#0      GTACCTGGATTCCCCTTTAATCGGGGACACTNCNAAAGGACAGTAGAGCG 878
consensus_650#1      --------------------------------------------------