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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 956 fasta sequence
[CCCCGAGGTTTNTTTTGGACGAAGCGGACAAAATGTCAACATGGGATTTGAGCCTCAAGTTCGTTCGATCTGCAACCATATTCGACCTGATCGGCAGACACTTTTATTCAGTGCTACTTTCAAAAAACGTGTGGAACTTGCACGCGATGTGTTAACCGATCCCGTTCGCATAATTCACGGTGACTTGGGGGAAGCAAATTCTGATGTAACGCAACGTATTATTCTTTTACCAACAGTACAAAGCAAGTGGAACTGGTTGTTAACGAACCTTGTAAAAATGCGTTTCTGAGGGAAGCTGTACTTGAGTACTTTGGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGCTTGAACGGATAATGATGTCGTCTTACTCTCACTGGANATATGGACCAATCAGAACGAAA-TTTGTTATCACCAGACTTTCAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAAGGAAAGAATTTAAATGTAGGTGGTGCAGGATTAGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTAGATGCTTCAAAGGTTCTTGTAGAAGACGGGGATCCTTCAGGACCATCGCCGGGGTCATCGAAGGGTCCTGCTACTGATCGTTTATCGGCAATGCGAGAAACTTTTCGCGCTCATTATAATGCACA]
[+] EMBL AL929679 [CCCCGAGGTTTNTTTTGGACGAAGCGGACAAAATGTCAACATGGGATTTGAGCCTCAAGTTCGTTCGATCTGCAACCATATTCGACCTGATCGGCAGACACTTTTATTCAGTGCTACTTTCAAAAAACGTGTGGAACTTGCACGCGATGTGTTAACCGATCCCGTTCGCATAATTCACGGTGACTTGGGGGAAGCAAATTCTGATGTAACGCAACGTATTATTCTTTTACCAACAGTACAAAGCAAGTGGAACTGGTTGTTAACGAACCTTGTAAAAATGCGTTTCTGAGGGAAGCTGTACTTGAGTACTTTGGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGCTTGAACGGATAATGATGTCGTCTTACTCTCACTGGANATATGGACCAATCAGAACGAAA TTTGTTATCACCAGACTTTCAAACGGAAAGATGTCGATATCATGGTAGCCACGGA ]
[+] EMBL BM648190 [ ccGAAACCGCAAATAATCTGCGG TTGAA GGATAATGATGTCGTCTTACT TCA TGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGA TTT AAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAAGGAAAGAATTTAAATGTAGGTGGTGCAGGATTAGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTAGATGCTTCAAAGGTTCTTGTAGAAGACGGGGATCCTTCAGGACCATCGCCGGGGTCATCGAAGGGTCCTGCTACTGATCGTTTATCGGCAATGCGAGAAACTTTTCGCGCTCATTATAATGCACA]
consensusID : consensus_6502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 858 fasta sequence
[TCCCCCGAGTTAACGCAAATATCTGCGGTTGCAAGGATAATGATGTCGTCTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCTGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAANGACACAAGAATTTTCTTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCCGGAAGATTTGATGAAACTTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTAAACACGCGAACAAAGGAAAGAATTTGAAACTGTAGTGGTGCAGGATTAGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTACATGCTTCCAACGGTTCTTGTAAAAGACGGGGGAATCCTTTCAGGGAAACCATCGCCGGGGGNTCCATCCGACAGGGGTCCCTGGCTAACTTGAGTCTCGATACAAATTCGGACAGAGTGCGACGAAAACCTTATCACGCGCCTCCACATTTATACTTGCNNCCAGTTGAAAGGCCATTAAAGCGGAATCATAAAACCGTGTGGAAAATACACCGTNTTCCGGAAGGGTGGGTGTATGATAATTAAAGCCAGGGACACACCAGGGNNGAAAACCGCCGCCCAACANTCGCTTCAATCCCNTACTATCACACAGTTGATCACAGCCGTGAANAATAAAAGGTGGCACTCANNTAATCA]
[+] EMBL AL932230 [TCCCCCGAGTTAACGCAAATATCTGCGGTTGCAAGGATAATGATGTCGTCTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCTGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAANGACACAAGAATTTTCTTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCCGGAAGATTTGATGAAACTTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTAAACACGCGAACAAAGGAAAGAATTTGAAACTGTAGTGGTGCAGGATTAGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTACATGCTTCCAACGGTTCTTGTAAAAGACGGGGGAATCCTTTCAGGGAAACCATCGCCGGGGGNTCCATCCGACAGGGGTCCCTGGCTAACTTGAGTCTCGATACAAATTCGGACAGAGTGCGACGAAAACCTTATCACGCGCCTCCACATTTATACTTGCNNCCAGTTGAAAGGCCATTAAAGCGGAATCATAAAACCGTGTGGAAAATACACCGTNTTCCGGAAGGGTGGGTGTATGATAATTAAAGCCAGGGACACACCAGGGNNGAAAACCGCCGCCCAACANTCGCTTCAATCCCNTACTATCACACAGTTGATCACAGCCGTGAANAATAAAAGGTGGCACTCANNTAATCA]
consensusID : consensus_6502#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[AATCGNCACGAGGTGTNAAACTGGTTGTTACGAACCTTGCTAAAAATGCTTTCTGAGGGAAGTGTATTGATATTTGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGTTGAAGGATAATGATGTCGTTTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTGCCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAACGGAAAGANTTTAAATGTAGGTANGTGCAGGATTACGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGGGTCGGTTCACTAGAT]
[+] EMBL BX469654 [AATCGNCACGAGGTGTNAAACTGGTTGTTACGAACCTTGCTAAAAATGCTTTCTGAGGGAAGTGTATTGATATTTGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGTTGAAGGATAATGATGTCGTTTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTGCCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAACGGAAAGANTTTAAATGTAGGTANGTGCAGGATTACGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGGGTCGGTTCACTAGAT]
[+] EMBL BX610630 [ GAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACGAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTGCCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAA GGAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6502#0 CCCCGAGGTTTNTTTTGGACGAAGCGGACAAAATGTCAACATGGGATTTGAGCCTCAAGT 60
consensus_6502#2 ------------------------------------------------------------
consensus_6502#1 ------------------------------------------------------------
consensus_6502#0 TCGTTCGATCTGCAACCATATTCGACCTGATCGGCAGACACTTTTATTCAGTGCTACTTT 120
consensus_6502#2 ------------------------------------------------------------
consensus_6502#1 ------------------------------------------------------------
consensus_6502#0 CAAAAAACGTGTGGAACTTGCACGCGATGTGTTAACCGATCCCGTTCGCATAATTCACGG 180
consensus_6502#2 ------------------------------------------------------------
consensus_6502#1 ------------------------------------------------------------
consensus_6502#0 TGACTTGGGGGAAGCAAATTCTGATGTAACGCAACGTATTATTCTTTTACCAACAGTACA 240
consensus_6502#2 --------------------------------------------------AATCGNCACG 10
consensus_6502#1 ------------------------------------------------------------
consensus_6502#0 AAGCAAGTGGAACTGGTTGTTAACGAACCTTG-TAAAAATGCGTTTCTGAGGGAAGCTGT 299
consensus_6502#2 AGGT--GTNAAACTGGTTGTTA-CGAACCTTGCTAAAAATGC-TTTCTGAGGGAAG-TGT 65
consensus_6502#1 ------------------------------------------------------------
consensus_6502#0 ACTTGAGTACTTTGGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGC 359
consensus_6502#2 ATT--GATATTT--GTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGG- 120
consensus_6502#1 ------------------------------TCCCCCGAGTTAACGCAAATA-TCTGCGG- 28
* ** * ******** *******
consensus_6502#0 TTGAACGGATAATGATGTCGTCTTACTCTCACTGGANATATGGACCAATCAGAACGAAAT 419
consensus_6502#2 TTGAA-GGATAATGATGTCGTTTTACT-TCA-TGGAGATATGGACCAATCAGAACGAAAT 177
consensus_6502#1 TTGCAAGGATAATGATGTCGTCTTACT-TCA-TGGAGATATGGACCAATCAGAACGAAAT 86
*** * *************** ***** *** **** ***********************
consensus_6502#0 TT-GTTATCACCAGACTTTCAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGG 478
consensus_6502#2 TTTGTTATCACCAGATTT--AAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGG 235
consensus_6502#1 TTTGTTATCACCAGATTT--AAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGG 144
** ************ ** ****************************************
consensus_6502#0 CAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTG 538
consensus_6502#2 CAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTG 295
consensus_6502#1 CAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTG 204
************************************************************
consensus_6502#0 ATATCGATACTCACACACACCGTATTGGCC-GCACTGGACGCGCCGGTGAGAAAGGTACG 597
consensus_6502#2 ATATCGATACTCACACACACCGTATTGGCC-GCACTGGACGCGCCGGTGAGAAAGGTACG 354
consensus_6502#1 ATATCGATACTCACACACACCGTATTGGCCTGCACTGGACGCGCCGGTGAGAAAGGTACG 264
****************************** *****************************
consensus_6502#0 GCGTATACTCTAATTACCGACAAGGACA-AAGAATTTTCT-GGGCATCTGGTACGCAATC 655
consensus_6502#2 GCGTATACTCTAATTACCGACAAGGACA-AAGAATTTTCT-GGGCATCTGGTACGCAATC 412
consensus_6502#1 GCGTATACTCTAATTACCGACAANGACACAAGAATTTTCTTGGGCATCTGGTACGCAATC 324
*********************** **** *********** *******************
consensus_6502#0 TTGAAGGAGCAAATCAAGATGTACC-GGAAGATTTGATGAAACT-GGCAATGCAAAGTTC 713
consensus_6502#2 TTGAAGGAGCAAATCAAGATGTGCC-GGAAGATTTGATGAAACT-GGCAATGCAAAGTTC 470
consensus_6502#1 TTGAAGGAGCAAATCAAGATGTACCCGGAAGATTTGATGAAACTTGGCAATGCAAAGTTC 384
********************** ** ****************** ***************
consensus_6502#0 ATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAA-GGAAAGAATTTAAATGTAGGT- 771
consensus_6502#2 ATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAACGGAAAGANTTTAAATGTAGGTA 530
consensus_6502#1 ATGGTTTCGGAACAGCCGTTT-AAACACGCGAACAAA-GGAAAGAATTTGAAACTGTAGT 442
********************* *************** ******* *** ** *
consensus_6502#0 GGTGCAGGATTA-GGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCG-TTCAC 829
consensus_6502#2 NGTGCAGGATTACGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGGGTCGGTTCAC 590
consensus_6502#1 GGTGCAGGATTA--GGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCG-TTCAC 499
*********** *********************************** *** *****
consensus_6502#0 TAGATGCTTCAAA-GGTTCTTGTAGAAGACGGGGA---TCCTTCAGG---ACCATCGCCG 882
consensus_6502#2 TAGAT------------------------------------------------------- 595
consensus_6502#1 TACATGCTTCCAACGGTTCTTGTAAAAGACGGGGGAATCCTTTCAGGGAAACCATCGCCG 559
** **
consensus_6502#0 GGGTCATCG------AAGGGTCCT--GCTA--CTGATCGTTTATCGGCAATGCGAGAAAC 932
consensus_6502#2 ------------------------------------------------------------
consensus_6502#1 GGGGNTCCATCCGACAGGGGTCCCTGGCTAACTTGAGTCTCGATACAAATTCGGACAGAG 619
consensus_6502#0 TTTT-CGCGCTCATTATAATGCACA----------------------------------- 956
consensus_6502#2 ------------------------------------------------------------
consensus_6502#1 TGCGACGAAAACCTTATCACGCGCCTCCACATTTATACTTGCNNCCAGTTGAAAGGCCAT 679
consensus_6502#0 ------------------------------------------------------------
consensus_6502#2 ------------------------------------------------------------
consensus_6502#1 TAAAGCGGAATCATAAAACCGTGTGGAAAATACACCGTNTTCCGGAAGGGTGGGTGTATG 739
consensus_6502#0 ------------------------------------------------------------
consensus_6502#2 ------------------------------------------------------------
consensus_6502#1 ATAATTAAAGCCAGGGACACACCAGGGNNGAAAACCGCCGCCCAACANTCGCTTCAATCC 799
consensus_6502#0 -----------------------------------------------------------
consensus_6502#2 -----------------------------------------------------------
consensus_6502#1 CNTACTATCACACAGTTGATCACAGCCGTGAANAATAAAAGGTGGCACTCANNTAATCA 858
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||