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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 891 fasta sequence
[CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATG----CTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTT-G-AGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA-AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGG-TATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAACCT]
[+] EMBL BM647245 [CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATG CTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTT G AGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTAC AACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGG ]
[+] EMBL BX621053 [ GCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTAATACAATCAGACTAGCGGAGC TAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTCGCAGCATACAGCATTCATGACAGTATTTCGAACGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGG TATGCA ]
[+] EMBL BM594121 [ ccgGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAACCT]
consensusID : consensus_6506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGT]
[+] EMBL BM622883 [CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGT]
consensusID : consensus_6506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[ACCGACGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATTTCGCTGCCGGTGTGGCCCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGTTGATCAGTACCTGCCGATGACGATCATGGGTGTGTTCAGCATTGTCGGTGCCCTGTCGCTGGCCATCCTAAAGGACAAGCTCAGCCCAAAGTATCGTCAGCGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCGCACAGCACGGACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG]
[+] EMBL BX623649 [ACCGACGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATTTCGCTGCCGGTGTGGCCCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGTTGATCAGTACCTGCCGATGACGATCATGGGTGTGTTCAGCATTGTCGGTGCCCTGTCGCTGGCCATCCTAAAGGACAAGCTCAGCCCAAAGTATCGTCAGCGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCGCACAGCACGGACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6506#0 CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTA 60
consensus_6506#1 ------------------------------------------------------------
consensus_6506#2 ------------------------------------------------------------
consensus_6506#0 TCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTT 120
consensus_6506#1 ------------------------------------------------------------
consensus_6506#2 ------------------------------------------------------------
consensus_6506#0 GCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATGCTCTCTCTCCCTCG 180
consensus_6506#1 ------------------------------------------------------------
consensus_6506#2 ------------------------------------------------------------
consensus_6506#0 TTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTG 240
consensus_6506#1 -----------------------CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAG 37
consensus_6506#2 ------------------------------------------------------------
consensus_6506#0 TAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAG 300
consensus_6506#1 CGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAG 97
consensus_6506#2 -------------------------------------------------------ACCGA 5
*
consensus_6506#0 TAGAATCAAACCATTGGGAACAGATTTCAGCACACAAT-TTAAAGCTAGTATTT-AAATT 358
consensus_6506#1 TAGAATCAAACCATTGGGAACAGATTTCAGCACACAAT-TTAAAGCTAGTATTT-AAATT 155
consensus_6506#2 CGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATT 65
* * * * * * ** * * *** ** * * * * *****
consensus_6506#0 TAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAG 418
consensus_6506#1 TAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAG 215
consensus_6506#2 TCGCTGC----CGGTGTGGC-CCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGT 120
* * *** * ***** * * ** * * * * **
consensus_6506#0 CGATTAGTAA--GGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTC 476
consensus_6506#1 CGATTAGTAA--GGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTC 273
consensus_6506#2 TGATCAGTACCTGCCGATGACGATCATGGGT---GTGTTCAGCATTGTCGGTGCCCTGTC 177
*** **** * ** ** ** *** * ** *** *** * * **
consensus_6506#0 GATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAAC 536
consensus_6506#1 GATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAAC 333
consensus_6506#2 GCTGGCCATCCTAAAGGACAAGCTCA-GCCCAAAGTATCGTCAGCGCAGGCA-GGCGAAG 235
* * * * * ** * ****** * ** * * ** ******
consensus_6506#0 CATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACG 596
consensus_6506#1 CATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACG 393
consensus_6506#2 CAGGCGTC----GATCTA--TCAAAATGCTGCCACCATCAACG-GTACGAA-GCACCACG 287
** ** ** * * * * ** ** *** **** *** ****
consensus_6506#0 AACAA-AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACG 655
consensus_6506#1 AACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAA-CCTTCCGGATGAGGCACG 452
consensus_6506#2 CGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCG-CACAGCACG 346
****** * * * * ** * ***** * *****
consensus_6506#0 ATTTCATCGACCTACTTTATTGATAGTT-ATTTGTAAGATATTTAAGTA-----CTAAGG 709
consensus_6506#1 ATTTCATCGACCTACTTTATTGATAGTT-ATTTGTAAGATATTTAAGTA-----CTAAGG 506
consensus_6506#2 GACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAA 406
* ** * * * * * ***** * *** * **
consensus_6506#0 ACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGC 769
consensus_6506#1 ACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGC 566
consensus_6506#2 AGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCT--C 464
* * * *** * * * * * * ** * ** * * *
consensus_6506#0 AAGTATTAGGCAACTCCGGGCTCTGCATAAGGGT-ATGCAAGATAGCTAAAGTAAGTGCA 828
consensus_6506#1 AAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCA 626
consensus_6506#2 TATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG------ 518
* ** ** ** ***** * *** * * * ** ** * * *
consensus_6506#0 ATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAA 888
consensus_6506#1 ATATAACGGTGTTGTTGAACACGT------------------------------------ 650
consensus_6506#2 ------------------------------------------------------------
consensus_6506#0 CCT 891
consensus_6506#1 ---
consensus_6506#2 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||