|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1001 fasta sequence
[GCAGATTCCCGCNGGTTATATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAACATATCCGCAACACTTCACATCATCCGTGCCATCAGGAGTAGTAGTAACAAGGGTGACACACAGTGCACAACAGCACACAAGGCCAAAACAGAACGCAACACCGAANACCGGCACATGCAANACCAACACAAAAACCACACATTGCAGCACATGGCACTCAAATNGGAGCANAACATTAAGGTCAAAATAGCCATCTGGAGGCATTNGCATTGCATCCGGTNTCTATCCCTNATATNTAGTAACGTCAATCNGCATTGCACACAGGCATGAAAAGGAAATTGGAATTGGAATTCCATATCCAGGCTAGTCAAGCCCCCACCAACCAAACNAACAAACAAANGGACGCACAAAGCGGGAAACCCANAGCGGCCAAAAACCAACACAAGTGGCCCTAGGTCACACAACAATAACTTTACCCCATTTCCCTATTACACCAACAAANTAACTTAATTTCAAACAACCAACCAAGGCCTGGCTCAGTNNTCTAAACCATNGACCCCACGTNTAACCACTTTGCCAACACAGCAAAGCTCGGCACNACCAAGATTAGGGTAGGTAAACGAGGNGTTANGACACGTGGACCAACCCTGAGGNGAGGACCCGACCATCTNGTTAGCAAANNANCCTTACGAATTCAACCTTTGGCANCANTTGGACTTAATACCAGGGGGACGGACCCGAAAAATTCCTCAACNGGNTTACTGTGCCNAACTATCAAATGCACTTTATGCACATNNGGGTCTNAGAAAGNNGCGACACAACATGGAGGAGAANACCGTGGGGACACATTAACCCCCCCTTATATGGCGTGACGCCCACACACANCNGCAGAGACCCCCGGGTATAGACAGCAGGNGCTN]
[+] EMBL AL695197 [GCAGATTCCCGCNGGTTATATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAACATATCCGCAACACTTCACATCATCCGTGCCATCAGGAGTAGTAGTAACAAGGGTGACACACAGTGCACAACAGCACACAAGGCCAAAACAGAACGCAACACCGAANACCGGCACATGCAANACCAACACAAAAACCACACATTGCAGCACATGGCACTCAAATNGGAGCANAACATTAAGGTCAAAATAGCCATCTGGAGGCATTNGCATTGCATCCGGTNTCTATCCCTNATATNTAGTAACGTCAATCNGCATTGCACACAGGCATGAAAAGGAAATTGGAATTGGAATTCCATATCCAGGCTAGTCAAGCCCCCACCAACCAAACNAACAAACAAANGGACGCACAAAGCGGGAAACCCANAGCGGCCAAAAACCAACACAAGTGGCCCTAGGTCACACAACAATAACTTTACCCCATTTCCCTATTACACCAACAAANTAACTTAATTTCAAACAACCAACCAAGGCCTGGCTCAGTNNTCTAAACCATNGACCCCACGTNTAACCACTTTGCCAACACAGCAAAGCTCGGCACNACCAAGATTAGGGTAGGTAAACGAGGNGTTANGACACGTGGACCAACCCTGAGGNGAGGACCCGACCATCTNGTTAGCAAANNANCCTTACGAATTCAACCTTTGGCANCANTTGGACTTAATACCAGGGGGACGGACCCGAAAAATTCCTCAACNGGNTTACTGTGCCNAACTATCAAATGCACTTTATGCACATNNGGGTCTNAGAAAGNNGCGACACAACATGGAGGAGAANACCGTGGGGACACATTAACCCCCCCTTATATGGCGTGACGCCCACACACANCNGCAGAGACCCCCGGGTATAGACAGCAGGNGCTN]
consensusID : consensus_6513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 838 fasta sequence
[CCGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATTTAAACTACAGCTGTGTTTTATATATTTGTAAAGAATGTATATTTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTGTGTTGGTGAGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTGCGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGGCAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTTATTGCAGCAACCGTGTGGTTAGCACATGCTGTAAGCAGCAAGTAAAGCACAAGCAATGTAAAAATGAATTTGCATGGAAAACGAAGGAAAATCACGAATCAAAAAGCTGTGCCCAGAATCAATACGAATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTAGACAGGTTTAAACGAAAGCATAATTAACAGAGGATGTATTTTTGTTGAAATAAAAGTCAAAAG]
[+] EMBL BM609403 [CCGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATTTAAACTACAGCTGTGTTTTATATATTTGTAAAGAATGTATATTTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTGTGTTGGTGAGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTACGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGGCAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTT ]
[+] EMBL BM609117 [ ccgCACAGCTGTAGTTTAAATGCCAGTACATGAAGTGTGAAAGTGTGTTGGCGAGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTGCGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGACAAGTCGCGCGTGCCAGCGTGGAAAGACTCTAATTACTTTACTTATTGCAGCAACCGTGTGGTTAGCACATGCTGTAAGCAGCAAGTAAAGCACAAGCAATGTAAAAATGAATTTGCATGGAAAACGAAGGAAAATCACGAATCAAAAAGCTGTGCCCAGAATCAATACGAATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTAGACAGGTTTAAACGAAAGCATAATTAACAGAGGATGTATTTTT ]
[+] EMBL BX616930 [ AGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTGCGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGGCAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTTATTGCAGCAACCGTGTGGTTAGCACATGCTGTAAGCAGCAAGTAAAGCATAAGCAATGTAAAAATGAATTTGCATGGAAAATGAAGGAAAATCACGAATCAAAAAGCTGTGCCCAGAATCAATACGAATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTAGACAGGTTTAAACGAAAGCATAATTAACAGAGGATGTATTTTTGTTGAAATAAAAGTCAAAAG]
consensusID : consensus_6513#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[CCGAAAACAAATCATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAAATATCGAAACTTACATATCGTGCATAGGAGTAGTAGTAAAAGGGTGAAAAGTGAAAAGAAAAGGCCAAACAGAACGAAACGAAACGGAATGAAACAAAAAAAACAAATGCAGAATGGACTAATGAGAAAATAAGTAAATGCATCGAGGATGATGATCGTTTTCTATTTGTACGTATCGATGAAAGATGAAAGAATGAATGAATCATTTGGTGTAGCCCACAACAACACACAAGCGAAGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTTGTGTTGGTGAGGCACCGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGGTACTACTTCAGTGCTATACAAGGCGTCGAAATTG]
[+] EMBL BM598093 [CCGAAAACAAATCATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAAATATCGAAACTTACATATCGTGCATAGGAGTAGTAGTAAAAGGGTGAAAAGTGAAAAGAAAAGGCCAAACAGAACGAAACGAAACGGAATGAAACAAAAAAAACAAATGCAGAATGGACTAATGAGAAAATAAGTAAATGCATCGAGGATGATGATCGTTTTCTATTTGTACGTATCGATGAAAGATGAAAGAATGAATGAATCATTTGGTGTAGCCCACAACAACACACAAGCGAAGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTTGTGTTGGTGAGGCACCGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGGTACTACTTCAGTGCTATACAAGGCGTCGAAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6513#1 --------CCGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATAT 52
consensus_6513#2 --------CCGAAAACAAATCATGCAAAACAATGCAAAACAAGA--------ACGAAAAT 44
consensus_6513#0 GCAGATTCCCGCNGGTTA--TATGCAAAACAATGCAAAACAAGA--------ACGAAAAT 50
*** * * ***** ** **** * * ** ** **
consensus_6513#1 TTAAACTACAGCTGTGTTTTATATATTTGTAAAGAATGTATATTTTTACAAATATAT-AA 111
consensus_6513#2 GTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAA--ACGAGTTTGTTGA 102
consensus_6513#0 GTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAA--ACGAGTTTGTTGA 108
**** ***** * * *** ** * * * * ** * * * * *
consensus_6513#1 AACACAGCTGTAGTTTAAATGCCAGTACATGA-AGAGTG--AAAGTGTGTTGGTGAGGCA 168
consensus_6513#2 CAAACCGAAACTGATTGCAAACTGATTTTTAA-ATATCG--AAACTTACATATCGTGCAT 159
consensus_6513#0 CAAACCGAAACTGATTGCAAACTGATTTTTAACATATCCGCAACACTTCACATCATCCGT 168
* ** * * ** * * * * * * * **
consensus_6513#1 ------CGGGGCGCTGTCAG-CCTCATACTG---AATG------ATATTGGGCCAATCTA 212
consensus_6513#2 ------AGGAGTAGTAGTAA-AAGGGTGAAA---AGTG------AAAAGAAAAGGCCAAA 203
consensus_6513#0 GCCATCAGGAGTAGTAGTAACAAGGGTGACACACAGTGCACAACAGCACACAAGGCCAAA 228
** * * * * * ** * *
consensus_6513#1 -CGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCC 271
consensus_6513#2 -CAGAACGAAACGAAACGGAATGAAACAAAAAAAACAAATGCAGAATGGACTAATGAGAA 262
consensus_6513#0 ACAGAACGCAACACCGAANACCGGCACATGCAANACCAACACAAAAACCACACATTGCAG 288
* * ** * * ** * * *
consensus_6513#1 GGTGC--CGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCT-GT------TC 322
consensus_6513#2 AATAAG-TAAATGCATCGAGGATGATGATCGTTTTCTATTTGTACGTATCGA------TG 315
consensus_6513#0 CACATGGCACTCAAATNGGAGCANAACATTAAGGTCAAAATAGCCATCTGGAGGCATTNG 348
* * * * * * * *
consensus_6513#1 AAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTT--CAGTGCTATACAAGGCGT 380
consensus_6513#2 AAAGATGA-AAGAATGAATGAATCATTTGGTGTAGC-CCA--CAACAACACACAAG---- 367
consensus_6513#0 CATTGCATCCGGTNTCTATCCCTNATATNTAGTAACGTCAATCNGCATTGCACACAGGCA 408
* * * * * *** * ***
consensus_6513#1 CGAAATTGCAACGGCATACTACACTTGCGTCATTAGT------ACCACCTCTTATTAAAC 434
consensus_6513#2 CGAAGGGAAAAAGGCAAACAAAA--TGCTGTAAAAAT------ATACATTCTT------- 412
consensus_6513#0 TGAAAAGGAAATTGGAATTGGAATTCCATATCCAGGCTAGTCAAGCCCCCACCAACCAAA 468
*** ** * * * *
consensus_6513#1 CTTACAAGTAGGGCGCCATCCACCACCCA----CTCTGGT--TTCGATCCTGCTCCGCGT 488
consensus_6513#2 --TACAAATA------TATAAAACACA-G----CTGTAGT--TTAAATGCCAGTACATGA 457
consensus_6513#0 CNAACAAACAAANGGACGCACAAAGCGGGAAACCCANAGCGGCCAAAAACCAACACAAGT 528
**** * * * * * * * * *
consensus_6513#1 GA----TGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGG 544
consensus_6513#2 AG----AGTGAAAGTTGTGTTGGTGAGGCACCGGGGCGCTGTCAGCCTCATACTGAATGA 513
consensus_6513#0 GGCCCTAGGTCACACAACAATAACTTTACCCCATTTCCCTATTACACCAACAAANTAACT 588
* * * * * *
consensus_6513#1 CAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTTATTGCAGCAACCGTGT 604
consensus_6513#2 TA--TTGGGCCAATCTACGTTGCAATA--CTATTAATGTTA--------GGGAACGGGAC 561
consensus_6513#0 TAATTTCAAACAACCAACCAAGGCCTGGCTCAGTNNTCTAAAC-----CATNGACCCCAC 643
* * * * * * * * **
consensus_6513#1 GGTTAGCACATGCTGTAAGC-AGCAA-GTAAAGCACAAGCAATGTAAAAATGAATTTGC- 661
consensus_6513#2 GGGAATCCCCT--TGCGGCA-AACGA-GCCGGGTGCCGGTGGTTTCCA--CGAATTTGT- 614
consensus_6513#0 GTNTAACCACTTTGCCAACACAGCAAAGCTCGGCACNACCAAGATTAGGGTAGGTAAACG 703
* * * * * * * * * * * *
consensus_6513#1 -----ATGGAAAACGAAGGAAAATCACGAATCAAAAAGCTGTGCCCA-GAATCAATACGA 715
consensus_6513#2 -----TTTTTTTTCCTCAGTCCATCTGGTTCAAAGTTGTTGATTGTA-GTTGAATTTAGT 668
consensus_6513#0 AGGNGTTANGACACGTGGACCAACCCTGAGGNGAGGACCCGACCATCTNGTTAGCAAANN 763
* * * * * * *
consensus_6513#1 ATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTA 775
consensus_6513#2 AGTGGTACTACTTCAGTGCTATACAAGGCGTCGAAATTG--------------------- 707
consensus_6513#0 ANCCTTACGAATTCAACCTTTGGCANCANTTGGACTTAATACCAGGGGGACGGACCCGAA 823
* *** * *
consensus_6513#1 GACAGGTTTAAACGAA--AGCATAATTAACAGAGGATGTATTTTTGTTGAAATAAAAGTC 833
consensus_6513#2 ------------------------------------------------------------
consensus_6513#0 AAATTCCTCAACNGGNTTACTGTGCCNAACTATCAAATGCACTTTATGCACATNNGGGTC 883
consensus_6513#1 AAAAG------------------------------------------------------- 838
consensus_6513#2 ------------------------------------------------------------
consensus_6513#0 TNAGAAAGNNGCGACACAACATGGAGGAGAANACCGTGGGGACACATTAACCCCCCCTTA 943
consensus_6513#1 ----------------------------------------------------------
consensus_6513#2 ----------------------------------------------------------
consensus_6513#0 TATGGCGTGACGCCCACACACANCNGCAGAGACCCCCGGGTATAGACAGCAGGNGCTN 1001
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||