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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 922 fasta sequence
[CCGCCCACGCGTCCG-GCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCAGGGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGCCAAAAGTCGCACGTGGAATGTGCACTGTTTTCACCCGACGGACAGTATCTGGTCACCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACCACCCGGCAAGATACGTAAGGATTTGAAGTACCAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT]
[+] EMBL BM578972 [CCGCCCACGCGTCCG GCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCAGGGGACCAGG ]
[+] EMBL BM582308 [ CCGCGCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCG ]
[+] EMBL BX621325 [ ACTGCCGCTAG TTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCA GGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGCCAAAAGTCGCACGTGGAATGTGCACTGTTTTCACCCGACGGACAGTATCTGGTCACCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACCACCCGGCAAGATACGTAAGGATTTGAAGTACCAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT]
consensusID : consensus_6527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 899 fasta sequence
[GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCGCGCGACTCGGAAATGCTGGCGACCGGCTCGCAGGACGGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATCACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCGAATGCATCTCGACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCGTGCTGATACTGCCAAAGAACCCGGAACACTTTGTGGTGTGCAATCGATCGAACACGGTCGTCATCATGAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAAGCGCGAGGGCGGTGCCTTCATCTGCGCCACGATATCGCCCCGGGGCGAGTTCATTTACTGCTGCGGTGAGGATTTGGTGCTGTACTGCTTCTCCGTGACGTCGGGCAAGCTGGAGCGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCATCAGAATCTGCTCGCATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAAAGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCCGCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC]
[+] EMBL BX468428 [GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCGCGCGACTCGGAAATGCTGGCGACCGGCTCGCAGGACGGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATCACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCGAATGCATCTCGACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCGTGCTGA ]
[+] EMBL BX608670 [ GGAAATGCTTGCGACCGGCTCGCAGGACGGACAGG TGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCT GTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGC CTCCTTCGA CCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGCCCGACGGTCATCACGTGCTGAGCGCC TC ATCGGACGGCACGGTAAAGGTGTGGTCGC TCAAGACGACCGAATGCATCTCGAC GTTCAAAGCGCTC GGTACGCACCTGGCGGTCAAC TCCGTGCTGATACTGCCAAAGAACCCGGAACACTTTGTGGTGTGCAATCGATCGAACACGGTCGTCATCATGAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAAGCGCGAGGGCGGTGCCTTCATCTGCGCCACGATATCGCCCCGGGGCGAGTTCATTTACTGCTGCGGTGAGGATTTGGTGCTGTACTGCTTCTCCGTGACGTCGGGCAAGCTGGAGCGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCATCAGAATCTGCTCGCATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAAAGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCCGCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6527#0 CCGCCCACGCGTC-CGGCGACGAAAGCAA-ACGATTTCGAACTGCCGCTAGCTTTTTTCC 58
consensus_6527#1 --GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCC 58
** * ** * ** *** ** ** * *** ** * ***
consensus_6527#0 TGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCG-TCTCATTCA 117
consensus_6527#1 TG-----TCGATGGCGTTCTCGCGCGACTCGGAAATGCTG--GCGACCGGCTCGCAGGAC 111
** ** * * * * * ** * * ** * * ** **
consensus_6527#0 GCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGG 177
consensus_6527#1 GGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGC 171
* * ******* ** ** ** * * * * * * * **** *
consensus_6527#0 TGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTC-CGACATTCACAATGGCC 236
consensus_6527#1 TCACTCG---AAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCA-AATTCTC 227
* *** ** *** * * * * * **** * * *** ** *** *
consensus_6527#0 ACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTG---CCCGACAAAAAGCTGA 293
consensus_6527#1 ACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGA 287
** * * * * * ***** * * **** * * ***** *****
consensus_6527#0 TCGATCTGTACGAGCAGATAGTGCTGG-AGCTGATTGAGCTGCGCGAGCTGGGTGCCGCC 352
consensus_6527#1 AAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATC 347
** * ** ** * * * * * *** ** ** * * * *
consensus_6527#0 CGGTCGTTGCTGC-GCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACG 411
consensus_6527#1 ACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCG 407
** * ** * * **** * * *** * ** * *** *** ** **
consensus_6527#0 GTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCC 471
consensus_6527#1 A---ATGCATCTCG---ACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCG 461
** ******* ** * **** ** * * * * ** *
consensus_6527#0 GGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGT 531
consensus_6527#1 TGCTGATACTGCCAAAGA---ACCCGGAACACTTTGTGGTGTGCAATCGATCGA--ACAC 516
* * * * ****** ** * ** * ** * * * ** *
consensus_6527#0 GTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCA 591
consensus_6527#1 GGTCGT-----CATCAT-GAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAA 570
* *** * ** * ** ** ** ** * * * * **** * *
consensus_6527#0 GCACCAAGG-ATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCA 650
consensus_6527#1 GCGCGAGGGCGGTGCCTTCATCTG-CGCCACGAT--ATC-GCCCCGGGGCGAGTTCATTT 626
** * * ** *** * * * * ***** *** * *** ** **
consensus_6527#0 TCAGGGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGC 710
consensus_6527#1 ACTG----CTGCGGTGAGGATTTG-GTGCTGTACTGCTTCTCCGTGACGTCGGGCA-AGC 680
* * * * ** ** * * * * *** *** * ** **
consensus_6527#0 CAAAAGTCGCACGTGGAATGTGCACT-----GTTTTCACCCGACGGACAGTATCTGGTCA 765
consensus_6527#1 TGGAG--CGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCA 738
* ** *** *** ****** * **** * * * *** * **
consensus_6527#0 CCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACC----ACCCGGCAAGATACG 821
consensus_6527#1 TCAG-AATCTGCTCG-CATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAA 796
* * * * ** ** * ** * **** * ** * * ** **
consensus_6527#0 TAAGGATTTGAAGTACCAGGCCCAGGACAACT--TCATGATGATGGAGCAAGCCATC-CT 878
consensus_6527#1 AGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCC 856
* * * * * ** * *** * * * *** * * ** ** *
consensus_6527#0 GTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT 922
consensus_6527#1 GCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC- 899
* * * * ** * * * ** * * * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||