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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1185 fasta sequence
[CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTG-TGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAA-TTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGAGAAACGAGGCTGGCACTCAACCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCG-G-GGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAATCTGCCG-ATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCG-AGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGG-CCACAATAGCAACATGATCGCGCTGAAGGTAC-AGATGGAGAAACGGAAAC-AACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG-TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA]
[+] EMBL CNS08I0K [CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTG TGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAA TTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGAGAAACGAGGCTGGCACTCAACCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCG G GGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAATCTGCCG ATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCG AGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGG CCACAATAGCAACATGATCGCGCTGAAGGTACAAGATGGAGAAACGGAAAC AACCGCTACGGCTGCAGATTGAAAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGC ]
[+] EMBL CNS08NGO [ GCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATTGGCTGCTGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAATTTTTCCAATCACAATACCGTCGTGTGACTAGAAGAAGCGGACAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACGGAAAACTACGAAATGCGCATCAAAATCAAGTGGGGCCGCGCGGCATCGAAACGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGGCCAAAGAGTCTGCCGCATCGGGCGTGCATTTTTCTCAACCTGGACGATCGCATAGTCTATGCGCAGCGATACGCCCGATTCCATCGACTACAAACCGCACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACCGCTCACGGGCCGTCGGCGGCCCACAATAGCAACATGATCGCGCTGAAGGTAC AGATGGAGAAACGGAAAC AACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGATTATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTGTTTTTTTTTATATTATGATTTTGCATTACTAGTTT ]
[-] EMBL CNS08NGP [ TCGCGCTGAAGGTAC AGATGGAGAAACGGAAACAAACCGCTACGGCTGCAAATTGACAAAAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAGCTCAAGTGTGAACCGAAGGATATTCGGCTGTACTTTGACGGCGAGCTGGTTGGCAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTTTGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTG TTTTTTTTATATTATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACAC ]
[-] EMBL CNS08I0L [ GGATGAAATGCGCAGAGAGCTTTTTTGTTGCCCTG TTTTTTTTATATTATGTTTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTTTGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACGGATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACCTGGTTGCCCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTATTCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATTATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA]
consensusID : consensus_6536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[NGCCGAGGTTGAGTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAGTGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGTGCCAAAGAGTCTGCGATCGGGCGTGCATTNTTTCTCAACCTGGACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGTCGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACAACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAG]
[+] EMBL AL931199 [NGCCGAGGTTGAGTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATACGATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATTTAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAGTGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACATTTTTAACCAGCTGGCGTGCCAAAGAGTCTGCGATCGGGCGTGCATTNTTTCTCAACCTGGACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCAGTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGTCGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACAACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGCCGAAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6536#0 CCGCACCCGCTCCCGCCGGTCAAGAGGACCTACTGCACAGGGAAATCGAGCGCCAGTATT 60
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 GGCTGTGATATCATTGGACTGTGATGATGACCCGACGCCATCGCAGCCAATTTTCCAATC 120
consensus_6536#1 ----------------------------------------------------------NG 2
consensus_6536#0 ACAATACCGTCGTGTGACTAGAAGAAGCGGAG-AAACGAGGCTGGCACTCAACCTAATAC 179
consensus_6536#1 CCGAGGTTGA-GTGTGACTAGAAGAAGCGGAGCAAACGAGGCTGGCACTCAATCTAATAC 61
* * * ********************* ******************* *******
consensus_6536#0 GATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATT 239
consensus_6536#1 GATAAGCTTAGACTCCGATGACGAGAGTGGTGATGGAGCAGTAGAGCTGGAACCTTCATT 121
************************************************************
consensus_6536#0 TAGCGCCGCCAACAGTTCGTTCGAAAC-GGAAAACTACGAAATGC-GCATCAAAATCAAG 297
consensus_6536#1 TAGCGCCGCCAACAGTTCGTTCGAAACTGGAAAACTACGAAATGCTGCATCAAAATCAAG 181
*************************** ***************** **************
consensus_6536#0 TGGGG--CCGGGGCATC-GAAAC-GTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACAT 353
consensus_6536#1 TGGGTGCCTGGGGCATCTGAAACTGTTCGTCCATCGGCGGTATCAAAAGTTTGAGGACAT 241
**** * ******** ***** ************************************
consensus_6536#0 TTTTAACCAGCTGGCG-GCCAAAGAATCTGCCGATCGGGCGTGCATTTTT-CTCAACCTG 411
consensus_6536#1 TTTTAACCAGCTGGCGTGCCAAAGAGTCTGC-GATCGGGCGTGCATTNTTTCTCAACCTG 300
**************** ******** ***** *************** ** *********
consensus_6536#0 GACGATC-GCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCGCACCA 470
consensus_6536#1 GACGATCTGCATAGTCTATGCGAGCGATACGCCCGATTCCATCGACTACAAACCTGACCA 360
******* ********************************************** ****
consensus_6536#0 GTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGACC-GCTCACGGGC 529
consensus_6536#1 GTTCATTGCTGGGCGCATTCTAAAAACCAAAGCGCCAATCCTTCCGANCTGCTCACGGGT 420
*********************************************** * *********
consensus_6536#0 CGTCGGCGGCCACAATAGCAACATGATCGCGCTGAAGGTACAGATGGAGAAACGGAAACA 589
consensus_6536#1 CGTCGACCGGCACAATAGCAACATGATCACGCTGAAGGTACAGATGGAGAAACGGAAACA 480
***** * * ****************** *******************************
consensus_6536#0 ACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGC 649
consensus_6536#1 ACCGCTACGGCTGCAGATTGACAAGAATCAAACCATGTCCGTGCTGGTGATTAAATGCGC 540
************************************************************
consensus_6536#0 CGAAGAGCTCAAGTGTGAACCGAAGAATATTCGGCTGTACTTTGACGGCGAGCTGGTTGG 709
consensus_6536#1 CGAAGAG----------------------------------------------------- 547
*******
consensus_6536#0 CAATAATGATAAGCCAGAGGATCTCGACCTAGAAGGGGACGAGATACTGGACATTCGTTT 769
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 TGTGAAGTAATTGGATGAAATGCGCAGAGAGCTTTATTGTTGCCCTGTTTTTTTTATATT 829
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 ATGATTTTGCATTACTAGTTTCAAATATATAAAGTCGTTCGACATAAATAAAATCATCTT 889
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 TGATGGCAACATTTTTCAAAGCAAGTGGGAGAGAACCAGCTATCTGTAAATTTTGATACG 949
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 GATATAGACGTCCCGAGTACAGTTATGTTAGAAACAGCTTTACTGTTCACACTTGGTTGC 1009
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 CCACGAAGCAGGCTCCAAAGGTGCGCAACTTTTCGAGACAACGCGATGAAAAATCGTTAT 1069
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 TCGTAGAATGGCATTCAATGTGGAAGCGATTCCATTGATGTATGTCTATTTATTTCAATT 1129
consensus_6536#1 ------------------------------------------------------------
consensus_6536#0 ATTTAATTAAAGTGCGTAAAACATACTTTTCTGTTAAAAAATACACAGCATTTAAA 1185
consensus_6536#1 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||