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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1206 fasta sequence
[TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCTGTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAAAACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCAACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAGTTTCGGACGTCGCTCGCGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGCTACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC-CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA-CCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGGTAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGCCGTACTGGCTGCTACTACTAG-CAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATACCTTACTTG]
[+] EMBL CNS08GVR [TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCTGTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAAAACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCAACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAGTTTCGGACGTCGCTCGCGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGCTACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTTC CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTTCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA CCGTTCCGTTCGTGTAGCT ]
[-] EMBL CNS08GVQ [ TTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGTTGTGGCGAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTACTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACATTTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCCGGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTACCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGGACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCCGAATACGGCCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATCAGCAGCACGA CCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGGTAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGCCGTACTGGCTGCTACTACTAG CAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATACCTTACTTG]
[-] EMBL CNS08QWN [ GATCGAGGCGTGATCGCGCGAGTACGCGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCCAGTGCATTGCCGGGGCCAATCATCAGCCAGTCGGCCGAG TGCACAGCAGACCGTGCATCAGCAGCACGACCCGTTCCGTTCGTGTAG TTGCCGCTTGC ]
[-] EMBL CNS08GRI [ ggctctACGGTTATTCTTCAGCTTGTAGCTATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGCTCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGAGCGTGGGTCGTACTGGCTGCTACTACTAGACAGCACCAGCAACGACAGCAGGCAAATGCCCACGTTGGAAAAGGTTTGCTGCTGCTTCATTCTGGCGATGATCCACGGTTGTATGCGATACCTTACTTG]
consensusID : consensus_6537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[GGCAAGAATCGGCACGANGNATTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTCGATCACGACGGCCTGGGACGAAACGCAGGAGACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAGCGACTGGCGGGGCGACATCCCGCAGGTCCTGCTGCCAGGCGGGAACGGCCTTCCGGAATGGGGGCTTACCGAAAGGGCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGAAGGCCCCCGGGAGGAAAACCAATTCCTTAACACAGTTCCGAAAGCCGGGGGGTTGGTCCTTGG]
[+] EMBL BX468902 [GGCAAGAATCGGCACGANGNATTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTCGATCACGACGGCCTGGGACGAAACGCAGGAGACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAGCGACTGGCGGGGCGACATCCCGCAGGTCCTGCTGCCAGGCGGGAACGGCCTTCCGGAATGGGGGCTTACCGAAAGGGCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGAAGGCCCCCGGGAGGAAAACCAATTCCTTAACACAGTTCCGAAAGCCGGGGGGTTGGTCCTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6537#0 TTTTATTTATCTTTATTAGACGCTTTGGCTTAACTATTCGATGCTTCAACTTAATGCGCT 60
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 GTTTTTTTCCGTTCGGGTTTATACATAAATACCACAGCAAACTTCCCTAGATCACAATAA 120
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 AACCTACTATCACATACTTGAACGTATGTGGGGAAGCTCAGTCAAGTTGACTGCACTTCA 180
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 ACCCCCTAATCCGCCACTTCAGCGGATGCCATTCCTTCCATCACCGGTTCGTAGAGCAAG 240
consensus_6537#1 ---------------------------------------GGCAAGAATCGGCACGANGNA 21
** * * *
consensus_6537#0 TTTCGGACGTCGCTCG-CGATCAAGAAGTCCAGATGGTTAAACAGCACATCGTTCACCGC 299
consensus_6537#1 TTTGTCATCTTCCTTGGCGGTNCGATCGTGTTCA-GTTTGGGCATCTGGACGCTGGTGGA 80
*** * * ** * ** * ** * * ** ** * ** * *
consensus_6537#0 TACGCTTCGCTTCAGGTTGGGCAGCTTCCTGGCCAGCCGGTTCACGTCCTCCGGTGTGGC 359
consensus_6537#1 CAAACACTTCATCAA--CGAGCTGCT-CGGCACGAACCTGTTCTC-CGGTGCGGTGTA-C 135
* * * *** * ** *** * * * ** **** * * ****** *
consensus_6537#0 GAGAAAATCGTTCAACCCATAGTACATCACTACCGGTGCCGTTACGCGCGAAAGATCGTA 419
consensus_6537#1 GTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCG 195
* * **** ** * * * ** * ** * * * **
consensus_6537#0 CTCGGGCGGTGTAGCCGAACCGTAGATCAGTACATTTTTCAGCTTTCCATAGTCATACAT 479
consensus_6537#1 GCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATC-TTCGT 254
* * ** * * * * **** * * * * * * ** * * *
consensus_6537#0 TTCGAACCGATTCGACAGCACCTCCTGGGCGTAGTGCACCAACTGCCGCGTGGCCGAGCC 539
consensus_6537#1 GACGATGCTGATCGGCGGCA--TCCTGGGGTACGTGTTCCGCGAGAAG-GTATCGCAAAC 311
*** * *** * *** ******* *** ** * * ** * * *
consensus_6537#0 GGCTGGCGTATGTCCGAACAGGATCGGCAGCATCACCGGATCCAGCTGCGAAGGGTTGTA 599
consensus_6537#1 GATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGCCGCTC--GATCACG 369
* **** * * * * *** * *** ** ** ** * *
consensus_6537#0 CCCGGCCAGCAGGAAGAGCAGATGCGCACACATGTTAATGTGCACCGTCGAGTTCGGCGG 659
consensus_6537#1 ACGGCCTGGGACGAAACGCAGGAG---ACGGCTGAAGTGTTGCGGCGTCCGGAGCTACAG 426
* * * * * *** **** * ** ** *** **** * * * *
consensus_6537#0 ACAGATGAGCTGGGCGATTTCGTGCAGTATCGGTTTGTTGGGCATGAACTCTCCGACGCC 719
consensus_6537#1 --CGACTGGCGGGGCGACATCCCGCAG-GTCCTGCTGCCAGGCGGGAACGGCCTTCCG-- 481
** ** ****** ** **** ** ** *** **** * **
consensus_6537#0 GAATACGG-CCAGCAGAATGTCGAGCGTCCGGGTTGATCGAGGCGTGATCGCGCGAGTAC 778
consensus_6537#1 GAATGGGGGCTTACCGAAAGG-GCCCGGTTGGCCATTCCGGAACAGANNAGTCCGCGGGA 540
**** ** * * *** * * ** ** ** * * ** *
consensus_6537#0 CGATTGCCGCGCGCATTTCCCAACCACACATCGTAGCCCTCGTTCGCGAGCAGGTAGGCC 838
consensus_6537#1 AGGCCCCCGGGAGGAA-----AACCA-ATTCCTTAACACAGTTCCGAAAGCCGGGGGGTT 594
* *** * * * ***** * * ** * * * ** *** ** **
consensus_6537#0 AGTGCATTGCCTGGGCCAATCATCAGCCAGTCGGCCGAGCTGCACAGCAGACCGTGCATC 898
consensus_6537#1 GGTCCTTGG--------------------------------------------------- 603
** * * *
consensus_6537#0 AGCAGCACGACCGTTCCGTTCGTGTAGCTTGCCGCTTGCACACGGTGAATCGTCAGCCGG 958
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 TAGCCATCGTCCGTCGATAGCGAGTGTTCCTCCACGTGGTAGCCGTACTTGGACACCAGC 1018
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 TCCGGCACAGACAGTCGGCCGTCTTCACTGTCTACTTGAAATCCTGATTTGGTCGAGCGA 1078
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 GCGTGGGCCGTACTGGCTGCTACTACTAGCAGCACCAGCAACGACAGCAGGCAAATGCCC 1138
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 ACGTTGGAAAAGGTTTGCTGCTGCTTCATCCTGGCGATGATCCGCGGTTGTATGCGATAC 1198
consensus_6537#1 ------------------------------------------------------------
consensus_6537#0 CTTACTTG 1206
consensus_6537#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||