cluster # 6542

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Anopheles gambiae
cluster # 6542 cluster # 6542 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6542#0 length = 1646 sequences # 4

consensus_6542#1 length = 496 sequences # 1

consensusID : consensus_6542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1646
fasta sequence

                              [CCGCACCACCATCACCACCGCCAGCGTGCGTTATCCATCGAATACTCACGAATTATACGTATTACACCATTCAATCTCAACATAAGATGGAAAAATATAACTTACACAGCAAACCCAAAAAATGAGTATTACATTCACACTCTATAATTGTTCCTTTACTGATGTCTAGATGTGAACCGACTTTCTTTAAGCTAATTGTAGCTTAACAACTTGAAGCTACTCTCCTGCGGATACGCGTGGGGGATGTCATCATGAATGTGGCCGATATTGTTAGATCCATTTCGGGCAAGGCAAGACCATTACAAGTTCCCCCTCGACACTTTGTTGTATTATCGTAAGGTGAGAGAAACAGCAAACAACAACACCTTTGTTAATTTTGACTGAAGAAGAATACAAGCACACTGGATTAACGCCAAGTATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGACAGAGGCTGTGGTTTAAAAAAATGACAAAAGGAAAAGGATAACAACTGTAGCGTATGGAAGGGTGATCGTAAAACCTCCTTCCCCTCCCCCCACCCCGTCGCATTAACAATCATCATATATCAATGTTTGCAAGAGCACTAGAGTAAATTTTCAGTTCGATGCGTACGCGCTTTACCTTTTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTTTTTACGTTCGACATGGCAAAGCCGCTTCCACTTTCCATTGTCATTAAATTCTCTTGC--GTGTGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAATGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGAGGGGGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCTATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATAT--TAAAAAGAAGAAGAAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTCATGTTAGCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGAGCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTGGAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACACACACACATAATACAAGCAATGCAAAGAAGAAAGAAATCAGGACAAATCACCTTACCCAAGCGCGCGCTTTATGGCAAACAATTCCAGTTGAGAGACGATTCCACCAAACGTAGAACAATGCTACAGCGCTACAGCCAGTCAGTCAGTATTCATTACATATATGTACACACACAAACACACACAATGCTAGTATTTGAAGCGATCACAAATCAGAGGTTTCTCGATGTTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGGCGATGCGAAGGGGAAGAAAATAA]

[+] EMBL BM647588             [CCGCACCACCATCACCACCGCCAGCGTGCGTTATCCATCGAATACTCACGAATTATACGTATTACACCATTCAATCTCAACATAAGATGGAAAAATATAACTTACACAGCAAACCCAAAAAATGAGTATTACATTCACACTCTATAATTGTTCCTTTACTGATGTCTAGATGTGAACCGACTTTCTTTAAGCTAATTGTAGCTTAACAACTTGAAGCTACTCTCCTGCGGATACGCGTGGGGGATGTCATCATGAATGTGGCCGATATTGTTAGATCCATTTCGGGCAAGGCAAGACCATTACAAGTTCCCCCTCGACACTTTGTTGTATTATCGTAAGGTGAGAGAAACAGCAAACAACAACACCTTTGTTAATTTTGACTGAAGAAGAATACAAGCACACTGGATTAACGCCAAGTATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGACAGAGGCTGTGGTTTAAAAAAATGACAAAAGGAAAAGGATAACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM593041             [                                                                                                                                                                                                                                                                                                                                                                                              ccgGAAGAATACAAGCACACTGGATTAACGCCAAGTATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGACAGAGGCTGTGGTTTAAAAAAAGGATAACAACAAAAACAAAACACGTGTAGCGTATGGAAGGGTGATCGTAAAACCTCCTTCCCCTCCCCCCACCCCGTCGCATTAACAATCATCATATATCAATGTTTGCAAGAGCACTAGAGTAAATTTTCAGTTCGATGCGTACGCGCTTTACCTTTTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTTTTTACGTTCGACATGGCAAAGCCGCTTCCACTTTCCATTGTCATTAAATTCTCTTGC  GTGTGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAATGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGAGGGGGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCTATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATAT  TAAAAAGAAGAAGAAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM647367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgGAGCACTAGAGTAAATTTTCCGTTCGATGCGTACGCGCTTTACCTTTTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTTTTTACGTTCGACATGGCAAAGCCACTTCCACTTTCCATTGTCATTAAATTCTCTTGCGTGTGTGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAATGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGA GGGGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCTATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATATAAAAAAAAGAAGAA AAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTCATGTTAGCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGAGCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTGGAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACA                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM653782             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccgAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATA   TAAAAAAAAGAAGAAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTC     AGCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGAGCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTGGAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACACACACACATAATACAAGCAATGCAAAGAAGAAAGAAATCAGGACAAATCACCTTACCCAAGCGCGCGCTTTATGGCAAACAATTCCAGTTGAGAGACGATTCCACCAAACGTAGAACAATGCTACAGCGCTACAGCCAGTCAGTCAGTATTCATTACATATATGTACACACACAAACACACACAATGCTAGTATTTGAAGCGATCACAAATCAGAGGTTTCTCGATGTTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGGCGATGCGAAGGGGAAGAAAATAA]




>consensus_6542#0
CCGCACCACCATCACCACCGCCAGCGTGCGTTATCCATCGAATACTCACGAATTATACGT
ATTACACCATTCAATCTCAACATAAGATGGAAAAATATAACTTACACAGCAAACCCAAAA
AATGAGTATTACATTCACACTCTATAATTGTTCCTTTACTGATGTCTAGATGTGAACCGA
CTTTCTTTAAGCTAATTGTAGCTTAACAACTTGAAGCTACTCTCCTGCGGATACGCGTGG
GGGATGTCATCATGAATGTGGCCGATATTGTTAGATCCATTTCGGGCAAGGCAAGACCAT
TACAAGTTCCCCCTCGACACTTTGTTGTATTATCGTAAGGTGAGAGAAACAGCAAACAAC
AACACCTTTGTTAATTTTGACTGAAGAAGAATACAAGCACACTGGATTAACGCCAAGTAT
AAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGACA
GAGGCTGTGGTTTAAAAAAATGACAAAAGGAAAAGGATAACAACTGTAGCGTATGGAAGG
GTGATCGTAAAACCTCCTTCCCCTCCCCCCACCCCGTCGCATTAACAATCATCATATATC
AATGTTTGCAAGAGCACTAGAGTAAATTTTCAGTTCGATGCGTACGCGCTTTACCTTTTT
TCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTTTTT
ACGTTCGACATGGCAAAGCCGCTTCCACTTTCCATTGTCATTAAATTCTCTTGCGTGTGT
GTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAATGC
AACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGAGGGGGG
AGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCTATA
TTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATGCTT
CAAATGGCATGCTACATATTAAAAAGAAGAAGAAAAAAAAACACACACACACATTCACAC
ATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTCATGTTAGCA
CCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGAGCG
GATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTGGAG
GAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACACACACACATAAT
ACAAGCAATGCAAAGAAGAAAGAAATCAGGACAAATCACCTTACCCAAGCGCGCGCTTTA
TGGCAAACAATTCCAGTTGAGAGACGATTCCACCAAACGTAGAACAATGCTACAGCGCTA
CAGCCAGTCAGTCAGTATTCATTACATATATGTACACACACAAACACACACAATGCTAGT
ATTTGAAGCGATCACAAATCAGAGGTTTCTCGATGTTATACATATTTGCGTTGATTCTAT
TTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAA
TGGCGATGCGAAGGGGAAGAAAATAA

consensusID : consensus_6542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [GATCGCCGAGGAGCGACACAATCAGAGTTCTCGATGTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGCGATGCGAAGGGGAAGAAAATAAGAAGAAAACGCAAACGATCGTTCGAGCCAGGATGAAGTCCTAGCATCTGGTTCGGTTTTCACTCAAATAAAGGCATTTCCCGTCCTTTCGAAGGTTGACGAAAGCGCGGAACATGGGAGAAAACCGGGGCATGATATAGCAGCCGCCATCCCACCATCAACGGGGAATGTCAACGCGATGCCAACCGAAAAGAGGGAATGAAAAGTATAGAAACACAAACACACACAAAGGCAGAACAAGAATACGTTTGCGGCGTGCGTGTTAGGGAAGTGCTTCGTAGATATGGTATGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAATATGAAAGATATGTAAAAAAGA]

[+] EMBL AL931162             [GATCGCCGAGGAGCGACACAATCAGAGTTCTCGATGTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGCGATGCGAAGGGGAAGAAAATAAGAAGAAAACGCAAACGATCGTTCGAGCCAGGATGAAGTCCTAGCATCTGGTTCGGTTTTCACTCAAATAAAGGCATTTCCCGTCCTTTCGAAGGTTGACGAAAGCGCGGAACATGGGAGAAAACCGGGGCATGATATAGCAGCCGCCATCCCACCATCAACGGGGAATGTCAACGCGATGCCAACCGAAAAGAGGGAATGAAAAGTATAGAAACACAAACACACACAAAGGCAGAACAAGAATACGTTTGCGGCGTGCGTGTTAGGGAAGTGCTTCGTAGATATGGTATGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAATATGAAAGATATGTAAAAAAGA]




>consensus_6542#1
GATCGCCGAGGAGCGACACAATCAGAGTTCTCGATGTATACATATTTGCGTTGATTCTAT
TTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAA
TGCGATGCGAAGGGGAAGAAAATAAGAAGAAAACGCAAACGATCGTTCGAGCCAGGATGA
AGTCCTAGCATCTGGTTCGGTTTTCACTCAAATAAAGGCATTTCCCGTCCTTTCGAAGGT
TGACGAAAGCGCGGAACATGGGAGAAAACCGGGGCATGATATAGCAGCCGCCATCCCACC
ATCAACGGGGAATGTCAACGCGATGCCAACCGAAAAGAGGGAATGAAAAGTATAGAAACA
CAAACACACACAAAGGCAGAACAAGAATACGTTTGCGGCGTGCGTGTTAGGGAAGTGCTT
CGTAGATATGGTATGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAATATGAA
AGATATGTAAAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6542#0      CCGCACCACCATCACCACCGCCAGCGTGCGTTATCCATCGAATACTCACGAATTATACGT 60
consensus_6542#1      ---------------GATCGCCGAGGAGCGACA-CAATCAGA-GTTCTCGATGTATACAT 43
                                      * ****   * ***  * * ***  *   ** ***  ***** *

consensus_6542#0      ATT-ACACC-ATTCAATCTCAACATAAGATGGAAAAATATAACTTACACAGCAAACCCAA 118
consensus_6542#1      ATTTGCGTTGATTCTATTTTAG-ATCAGATATATTGGC-CACTCTTTACGAATGCGCGCT 101
                      ***  *    **** ** * *  ** ****  *       *   *  **       *   

consensus_6542#0      AAAATGAGTATTACATTCACACTCTATAATTGTTCCTTTACTGATGTCTAGATGTGAACC 178
consensus_6542#1      AGAATTATCAGAAATCAAATGCGATGCGAAGGGGAAGAAAATAAGAAGAAAACGCAAACG 161
                      * *** *  *  *     *  *  *   *  *       * * *     * * *  *** 

consensus_6542#0      GACTTTCTTTAAGCTAATTGTAGCTTAACAACTTGAAGCTACTCTCCTGCGGATACGCGT 238
consensus_6542#1      ATCGTTCG--AGCCAGGATGAAGTCCTAGCATCTGGTTCGGTTTTCACTCAAATAAAGGC 219
                        * ***   *  *    ** **    *  *  **   *   * **   *  ***   * 

consensus_6542#0      GGGGGATGTCATCATGAATGTGGCCGATATTGTTAGATCCATTTCGGGCAAGGCAAGACC 298
consensus_6542#1      ATTTCCCGTCCTTTCGAAGGTTGACGAAAGCGCGGAACA----TGGGAGAAAACCGGGGC 275
                             *** *   *** ** * *** *  *    *      * **  **  *  *  *

consensus_6542#0      ATTACAAGTTCCCCCTCGACACTTTGTTGTATTATCGTAAGGTGAGAGAAACAGCAAACA 358
consensus_6542#1      ATGATA---TAGCAGCCGCCATCCCACCATCAACGGGGAATGTCAACGCGATGCCAACCG 332
                      ** * *   *  *   ** **        *      * ** ** *  *  *   *** * 

consensus_6542#0      ACAACACCTTTGTTAATTTTGACTGAAGAAGAATACAAGCACACTGGATTAACGCCAAGT 418
consensus_6542#1      AAAAGA-----GGGAATGAAAAGTATAGAAACACAAACACACACAAAGGCAG-AACAAGA 386
                      * ** *     *  ***    * *  ****  * * *  *****      *    **** 

consensus_6542#0      ATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGA 478
consensus_6542#1      ATACGTTTGCGGCGTGCGTGT----------TAGGGAAGTG---CTTCGTAGATATGGTA 433
                      *** ****    * * * **           * *  ** **   ***  *     **  *

consensus_6542#0      CAGAGGCTGTGGTTTAAAAAAATGACAAAAGGAAAAGGATAACAAC-TGTAGCGTATGGA 537
consensus_6542#1      TGGATTTTAAGG----ATATAATAGCAAACGTATAAACAAAAAAATATGAAAGATATGTA 489
                        **   *  **    * * ***  **** * * **  * ** **  ** *   **** *

consensus_6542#0      AGGGTGATCGTAAAACCTCCTTCCCCTCCCCCCACCCCGTCGCATTAACAATCATCATAT 597
consensus_6542#1      AAAAAGA----------------------------------------------------- 496
                      *    **                                                     

consensus_6542#0      ATCAATGTTTGCAAGAGCACTAGAGTAAATTTTCAGTTCGATGCGTACGCGCTTTACCTT 657
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      TTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTT 717
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      TTTACGTTCGACATGGCAAAGCCGCTTCCACTTTCCATTGTCATTAAATTCTCTTGCGTG 777
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      TGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAA 837
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      TGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGAGGG 897
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      GGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCT 957
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      ATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATG 1017
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      CTTCAAATGGCATGCTACATATTAAAAAGAAGAAGAAAAAAAAACACACACACACATTCA 1077
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      CACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTCATGTTA 1137
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      GCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGA 1197
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      GCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTG 1257
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      GAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACACACACACAT 1317
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      AATACAAGCAATGCAAAGAAGAAAGAAATCAGGACAAATCACCTTACCCAAGCGCGCGCT 1377
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      TTATGGCAAACAATTCCAGTTGAGAGACGATTCCACCAAACGTAGAACAATGCTACAGCG 1437
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      CTACAGCCAGTCAGTCAGTATTCATTACATATATGTACACACACAAACACACACAATGCT 1497
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      AGTATTTGAAGCGATCACAAATCAGAGGTTTCTCGATGTTATACATATTTGCGTTGATTC 1557
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      TATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATC 1617
consensus_6542#1      ------------------------------------------------------------
                                                                                  

consensus_6542#0      AAATGGCGATGCGAAGGGGAAGAAAATAA 1646
consensus_6542#1      -----------------------------