These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1646 fasta sequence [CCGCACCACCATCACCACCGCCAGCGTGCGTTATCCATCGAATACTCACGAATTATACGTATTACACCATTCAATCTCAACATAAGATGGAAAAATATAACTTACACAGCAAACCCAAAAAATGAGTATTACATTCACACTCTATAATTGTTCCTTTACTGATGTCTAGATGTGAACCGACTTTCTTTAAGCTAATTGTAGCTTAACAACTTGAAGCTACTCTCCTGCGGATACGCGTGGGGGATGTCATCATGAATGTGGCCGATATTGTTAGATCCATTTCGGGCAAGGCAAGACCATTACAAGTTCCCCCTCGACACTTTGTTGTATTATCGTAAGGTGAGAGAAACAGCAAACAACAACACCTTTGTTAATTTTGACTGAAGAAGAATACAAGCACACTGGATTAACGCCAAGTATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGACAGAGGCTGTGGTTTAAAAAAATGACAAAAGGAAAAGGATAACAACTGTAGCGTATGGAAGGGTGATCGTAAAACCTCCTTCCCCTCCCCCCACCCCGTCGCATTAACAATCATCATATATCAATGTTTGCAAGAGCACTAGAGTAAATTTTCAGTTCGATGCGTACGCGCTTTACCTTTTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTTTTTACGTTCGACATGGCAAAGCCGCTTCCACTTTCCATTGTCATTAAATTCTCTTGC--GTGTGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAATGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGAGGGGGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCTATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATAT--TAAAAAGAAGAAGAAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTCATGTTAGCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGAGCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTGGAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACACACACACATAATACAAGCAATGCAAAGAAGAAAGAAATCAGGACAAATCACCTTACCCAAGCGCGCGCTTTATGGCAAACAATTCCAGTTGAGAGACGATTCCACCAAACGTAGAACAATGCTACAGCGCTACAGCCAGTCAGTCAGTATTCATTACATATATGTACACACACAAACACACACAATGCTAGTATTTGAAGCGATCACAAATCAGAGGTTTCTCGATGTTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGGCGATGCGAAGGGGAAGAAAATAA] [+] EMBL BM647588 [CCGCACCACCATCACCACCGCCAGCGTGCGTTATCCATCGAATACTCACGAATTATACGTATTACACCATTCAATCTCAACATAAGATGGAAAAATATAACTTACACAGCAAACCCAAAAAATGAGTATTACATTCACACTCTATAATTGTTCCTTTACTGATGTCTAGATGTGAACCGACTTTCTTTAAGCTAATTGTAGCTTAACAACTTGAAGCTACTCTCCTGCGGATACGCGTGGGGGATGTCATCATGAATGTGGCCGATATTGTTAGATCCATTTCGGGCAAGGCAAGACCATTACAAGTTCCCCCTCGACACTTTGTTGTATTATCGTAAGGTGAGAGAAACAGCAAACAACAACACCTTTGTTAATTTTGACTGAAGAAGAATACAAGCACACTGGATTAACGCCAAGTATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGACAGAGGCTGTGGTTTAAAAAAATGACAAAAGGAAAAGGATAACAAC ] [+] EMBL BM593041 [ ccgGAAGAATACAAGCACACTGGATTAACGCCAAGTATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGACAGAGGCTGTGGTTTAAAAAAAGGATAACAACAAAAACAAAACACGTGTAGCGTATGGAAGGGTGATCGTAAAACCTCCTTCCCCTCCCCCCACCCCGTCGCATTAACAATCATCATATATCAATGTTTGCAAGAGCACTAGAGTAAATTTTCAGTTCGATGCGTACGCGCTTTACCTTTTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTTTTTACGTTCGACATGGCAAAGCCGCTTCCACTTTCCATTGTCATTAAATTCTCTTGC GTGTGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAATGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGAGGGGGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCTATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATAT TAAAAAGAAGAAGAAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTA ] [+] EMBL BM647367 [ ccgGAGCACTAGAGTAAATTTTCCGTTCGATGCGTACGCGCTTTACCTTTTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTTTTTACGTTCGACATGGCAAAGCCACTTCCACTTTCCATTGTCATTAAATTCTCTTGCGTGTGTGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAATGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGA GGGGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCTATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATATAAAAAAAAGAAGAA AAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTCATGTTAGCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGAGCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTGGAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACA ] [+] EMBL BM653782 [ ccgAAAATCATATACGTTTCCATGCTTCAAATGGCATGCTACATA TAAAAAAAAGAAGAAAAAAAAACACACACACACATTCACACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTC AGCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGAGCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTGGAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACACACACACATAATACAAGCAATGCAAAGAAGAAAGAAATCAGGACAAATCACCTTACCCAAGCGCGCGCTTTATGGCAAACAATTCCAGTTGAGAGACGATTCCACCAAACGTAGAACAATGCTACAGCGCTACAGCCAGTCAGTCAGTATTCATTACATATATGTACACACACAAACACACACAATGCTAGTATTTGAAGCGATCACAAATCAGAGGTTTCTCGATGTTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGGCGATGCGAAGGGGAAGAAAATAA] consensusID : consensus_6542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [GATCGCCGAGGAGCGACACAATCAGAGTTCTCGATGTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGCGATGCGAAGGGGAAGAAAATAAGAAGAAAACGCAAACGATCGTTCGAGCCAGGATGAAGTCCTAGCATCTGGTTCGGTTTTCACTCAAATAAAGGCATTTCCCGTCCTTTCGAAGGTTGACGAAAGCGCGGAACATGGGAGAAAACCGGGGCATGATATAGCAGCCGCCATCCCACCATCAACGGGGAATGTCAACGCGATGCCAACCGAAAAGAGGGAATGAAAAGTATAGAAACACAAACACACACAAAGGCAGAACAAGAATACGTTTGCGGCGTGCGTGTTAGGGAAGTGCTTCGTAGATATGGTATGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAATATGAAAGATATGTAAAAAAGA] [+] EMBL AL931162 [GATCGCCGAGGAGCGACACAATCAGAGTTCTCGATGTATACATATTTGCGTTGATTCTATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATCAAATGCGATGCGAAGGGGAAGAAAATAAGAAGAAAACGCAAACGATCGTTCGAGCCAGGATGAAGTCCTAGCATCTGGTTCGGTTTTCACTCAAATAAAGGCATTTCCCGTCCTTTCGAAGGTTGACGAAAGCGCGGAACATGGGAGAAAACCGGGGCATGATATAGCAGCCGCCATCCCACCATCAACGGGGAATGTCAACGCGATGCCAACCGAAAAGAGGGAATGAAAAGTATAGAAACACAAACACACACAAAGGCAGAACAAGAATACGTTTGCGGCGTGCGTGTTAGGGAAGTGCTTCGTAGATATGGTATGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAATATGAAAGATATGTAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6542#0 CCGCACCACCATCACCACCGCCAGCGTGCGTTATCCATCGAATACTCACGAATTATACGT 60 consensus_6542#1 ---------------GATCGCCGAGGAGCGACA-CAATCAGA-GTTCTCGATGTATACAT 43 * **** * *** * * *** * ** *** ***** * consensus_6542#0 ATT-ACACC-ATTCAATCTCAACATAAGATGGAAAAATATAACTTACACAGCAAACCCAA 118 consensus_6542#1 ATTTGCGTTGATTCTATTTTAG-ATCAGATATATTGGC-CACTCTTTACGAATGCGCGCT 101 *** * **** ** * * ** **** * * * ** * consensus_6542#0 AAAATGAGTATTACATTCACACTCTATAATTGTTCCTTTACTGATGTCTAGATGTGAACC 178 consensus_6542#1 AGAATTATCAGAAATCAAATGCGATGCGAAGGGGAAGAAAATAAGAAGAAAACGCAAACG 161 * *** * * * * * * * * * * * * * * *** consensus_6542#0 GACTTTCTTTAAGCTAATTGTAGCTTAACAACTTGAAGCTACTCTCCTGCGGATACGCGT 238 consensus_6542#1 ATCGTTCG--AGCCAGGATGAAGTCCTAGCATCTGGTTCGGTTTTCACTCAAATAAAGGC 219 * *** * * ** ** * * ** * * ** * *** * consensus_6542#0 GGGGGATGTCATCATGAATGTGGCCGATATTGTTAGATCCATTTCGGGCAAGGCAAGACC 298 consensus_6542#1 ATTTCCCGTCCTTTCGAAGGTTGACGAAAGCGCGGAACA----TGGGAGAAAACCGGGGC 275 *** * *** ** * *** * * * * ** ** * * * consensus_6542#0 ATTACAAGTTCCCCCTCGACACTTTGTTGTATTATCGTAAGGTGAGAGAAACAGCAAACA 358 consensus_6542#1 ATGATA---TAGCAGCCGCCATCCCACCATCAACGGGGAATGTCAACGCGATGCCAACCG 332 ** * * * * ** ** * * ** ** * * * *** * consensus_6542#0 ACAACACCTTTGTTAATTTTGACTGAAGAAGAATACAAGCACACTGGATTAACGCCAAGT 418 consensus_6542#1 AAAAGA-----GGGAATGAAAAGTATAGAAACACAAACACACACAAAGGCAG-AACAAGA 386 * ** * * *** * * **** * * * ***** * **** consensus_6542#0 ATAAGTTTTTAACATACATGCCTTTGTTCACTCGATAACTGTTACTTTATTTGCGTGAGA 478 consensus_6542#1 ATACGTTTGCGGCGTGCGTGT----------TAGGGAAGTG---CTTCGTAGATATGGTA 433 *** **** * * * ** * * ** ** *** * ** * consensus_6542#0 CAGAGGCTGTGGTTTAAAAAAATGACAAAAGGAAAAGGATAACAAC-TGTAGCGTATGGA 537 consensus_6542#1 TGGATTTTAAGG----ATATAATAGCAAACGTATAAACAAAAAAATATGAAAGATATGTA 489 ** * ** * * *** **** * * ** * ** ** ** * **** * consensus_6542#0 AGGGTGATCGTAAAACCTCCTTCCCCTCCCCCCACCCCGTCGCATTAACAATCATCATAT 597 consensus_6542#1 AAAAAGA----------------------------------------------------- 496 * ** consensus_6542#0 ATCAATGTTTGCAAGAGCACTAGAGTAAATTTTCAGTTCGATGCGTACGCGCTTTACCTT 657 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 TTTTCTCAATCAGTTTGCTATGTATGATTCGTTTTGTCATAAACCCACCGAAACACGTTT 717 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 TTTACGTTCGACATGGCAAAGCCGCTTCCACTTTCCATTGTCATTAAATTCTCTTGCGTG 777 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 TGTGTGTGTTAGTGGTGTTTTAATGCTTGTTATTGATTGGGGCGGCACCGTCACCGTCAA 837 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 TGCAACTAAGCGCTTATTATGTGTTTTACGATCGATGTGTGTCTCTCGAAGCGGGGAGGG 897 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 GGGAGGTGGCGGTGTAAAAGTTGTTGTTTCGTAGTGTGGGTGGGATAAGAGATATATTCT 957 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 ATATTATGGATGTTAAAGTTGATCTTCCATTTTCCATGTAAAATCATATACGTTTCCATG 1017 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 CTTCAAATGGCATGCTACATATTAAAAAGAAGAAGAAAAAAAAACACACACACACATTCA 1077 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 CACATCACCTAACTTAACTAACTTGCTGGTGTGTCCCTTGTTGTCGTCGGTCTCATGTTA 1137 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 GCACCCTTACCCTAATAAACCTGCCTATCAAATGATATGATAAAACAGCAGCGCGTACGA 1197 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 GCGGATCAGTCGCGTTCGTTAATTTGTCTTTAACTTGATTGCGTTATTATGCTAATGCTG 1257 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 GAGGAACAATGCGCCGTGAAATTCTAAGTAAATTCTATTCACTCACTCACACACACACAT 1317 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 AATACAAGCAATGCAAAGAAGAAAGAAATCAGGACAAATCACCTTACCCAAGCGCGCGCT 1377 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 TTATGGCAAACAATTCCAGTTGAGAGACGATTCCACCAAACGTAGAACAATGCTACAGCG 1437 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 CTACAGCCAGTCAGTCAGTATTCATTACATATATGTACACACACAAACACACACAATGCT 1497 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 AGTATTTGAAGCGATCACAAATCAGAGGTTTCTCGATGTTATACATATTTGCGTTGATTC 1557 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 TATTTTAGATCAGATATATTGGCCACTCTTTACGAATGCGCGCTAGAATTATCAGAAATC 1617 consensus_6542#1 ------------------------------------------------------------ consensus_6542#0 AAATGGCGATGCGAAGGGGAAGAAAATAA 1646 consensus_6542#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||