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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence
[CCGGTTCGGCAGTGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGTGTGTTTTTAGCTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCC]
[+] EMBL BM584235 [CCGGTTCGGCAGTGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGTGTGTTTTTAGCTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCC]
[+] EMBL BM581932 [ ccgGTGGTTTTACTACGGAGT ATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGTGTGTTTTTAGCTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGC ]
consensusID : consensus_6547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence
[CCGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCCCTCCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGTGTAGTGGTTATTTAAAAATTGCGTTCCTTTAGGCACTCGGTATCAACGATCCCGCCCGTGTGTGTGTGTGTGTGCTATTTTTTACTTCAAACCCGGAGGGTTAGAAAATGATAAATTAAGCAGTGCGTTTCGATAGAACACTCAGCGACCCGCCCCCAGCATCATGAAGCGCAGAACCATTCTCTCGCTGCTGATCGCAGCGATCATACTCACAATCCTGATCGTCGTGTTTGTGCTAGCCACCCAGGGCAACATAACACTCCCCCCTCCACCGGGTGAACCTATCGCCCATCATCACCGTACCGGTGCGGTCGTCGCAAACGGTGCCGAGTGTGCCGCGATCGGGGCCCAAATCCTGCGCCAGAATGGTACCGCCGCCGACGCTGCCATCGCAACGCTGTTCTGCGAAGGCGTGACCTGCCCGCAAAGTATGGGCCTGGGCGGTGGCTTTCTGCTGACCATCTA]
[+] EMBL BM640660 [CCGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCCCTCCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGTGTAGTGGTTATTTAAAAATTGCGTTCCTTTAGGCACTCGGTATCAACGATCCCGCCCGTGTGTGTGTGTGTGTGCTATTTTTTACTTCAAACCCGGAGGGTTAGAAAATGATAAATTAAGCAGTGCGTTTCGATAGAACACTCAGCGACCCGCCCCCAGCATCATGAAGCGCAGAACCATTCTCTCGCTGCTGATCGCAGCGATCATACTCACAATCCTGATCGTCGTGTTTGTGCTAGCCACCCAGGGCAACATAACACTCCCCCCTCCACCGGGTGAACCTATCGCCCATCATCACCGTACCGGTGCGGTCGTCGCAAACGGTGCCGAGTGTGCCGCGATCGGGGCCCAAATCCTGCGCCAGAATGGTACCGCCGCCGACGCTGCCATCGCAACGCTGTTCTGCGAAGGCGTGACCTGCCCGCAAAGTATGGGCCTGGGCGGTGGCTTTCTGCTGACCATCTA]
consensusID : consensus_6547#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CCGCCCACGCGTCCGCGGTTGCGACGGAAAGGTAAACAAGGCAAAGGTGAAAAGCCGACGCCTATAAAAACAGAGAGTTTTGTGAGTTCTTTTGTGATCTAGCGCAAAAACAAGCTTTTGCAAGTTATAAGTAAATTAAAGATTTTCATAGTAAATGTGAGTATGGTAGTTTGGTGAATACCGGTCGTGCAACGTGGAAACATTTTACCTGATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCCGCCACCAAGGACATGTACG]
[+] EMBL BM607883 [CCGCCCACGCGTCCGCGGTTGCGACGGAAAGGTAAACAAGGCAAAGGTGAAAAGCCGACGCCTATAAAAACAGAGAGTTTTGTGAGTTCTTTTGTGATCTAGCGCAAAAACAAGCTTTTGCAAGTTATAAGTAAATTAAAGATTTTCATAGTAAATGTGAGTATGGTAGTTTGGTGAATACCGGTCGTGCAACGTGGAAACATTTTACCTGATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCCGCCACCAAGGACATGTACG]
consensusID : consensus_6547#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[CGACCCACGCGTCCGGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGAGTGCTTTTTTTAACTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGTTCAGACAATCAGCATGCCCGTCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGC]
[+] EMBL BM581202 [CGACCCACGCGTCCGGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGAGTGCTTTTTTTAACTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGTTCAGACAATCAGCATGCCCGTCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6547#1 -----------CCGGTGC-CCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTA 48
consensus_6547#3 --------CGACCCACGCGTCCGGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTA 52
consensus_6547#0 CCGGTTCGGCAGTGGTGC-CCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTA 59
consensus_6547#2 ------------------------------------------------------------
consensus_6547#1 CGTGTTGCTGCGCGTAAACCTCCCCACCCCTCCAGCGAGATCTCTGCTAAAGAACCGACT 108
consensus_6547#3 CGTGTTGCTGCGCGTAAACCTCCCCACCAA-CCAGCGAGATCTCTGCTAAAGAACCGACT 111
consensus_6547#0 CGTGTTGCTGCGCGTAAACCTCCCCACCAA-CCAGCGAGATCTCTGCTAAAGAACCGACT 118
consensus_6547#2 ------------------------------------------------------------
consensus_6547#1 GTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAA 168
consensus_6547#3 GTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAA 171
consensus_6547#0 GTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAA 178
consensus_6547#2 ----------------------------------CCGCCCACGCGTCCGCGGTTGCGACG 26
* ** ** * **
consensus_6547#1 ACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGG 228
consensus_6547#3 ACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGG 231
consensus_6547#0 ACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGG 238
consensus_6547#2 GAAAGGTAAACAAGGCAA-AGGTGAAAAGCCGACGCCTATAA---AAACAGAGAGTTTTG 82
** * **** ** * * * * ***** ** ** * * *
consensus_6547#1 AAAGTGGTGTAGTGGT-TATTTAAAAATTGCGTTCCTTTAGGCACTCGGTA--TCAACGA 285
consensus_6547#3 AAAGTGGAGTAGTGGT-TATTTAAAAATTGCGTTACTTTAGGCATTCGGTA--TCAACGA 288
consensus_6547#0 AAAGTGGAGTAGTGGT-TATTTAAAAATTGCGTTACTTTAGGCATTCGGTA--TCAACGA 295
consensus_6547#2 TGAGTTCTTTTGTGATCTAGCGCAAAAACAAGCTTTTGCAAGTTATAAGTAAATTAAAGA 142
*** * *** * ** **** * * * * * * *** * ** **
consensus_6547#1 TCCCGCCCGTGTGTGTGTGTGTGTGCTATTTTTTACTTCAAACC-CGGAGGGTTAGAAAA 344
consensus_6547#3 TCCCGCCCGCGTGTGTGTGAGTG--CTTTTTTTAACTTCAAACC-CGGAGGGTTAGAAAA 345
consensus_6547#0 TCCCGCCCGCGTGTGTGTGTGTG-----TTTTTAGCTTCAAACC-CGGAGGGTTAGAAAA 349
consensus_6547#2 TTTTCATAGTAAATGTGAGTATGGTAGTTTGGTGAATACCGGTCGTGCAACGTGGAAACA 202
* * **** * ** ** * * * * * * ** ** *
consensus_6547#1 TGATAA---ATTAAGCAGTGCGTTTCGATAGAACACTCAGCGACCCGCCCCCAGCATCAT 401
consensus_6547#3 TGATA-----TTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGAT 400
consensus_6547#0 TGATA-----TTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGAT 404
consensus_6547#2 TTTTACCTGATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGAT 262
* ** ** * * ** * ** * *** ** **
consensus_6547#1 GAAGCGCAGAACCATTCTCTCGCTGCTGATCG-CAGCGATCATACTC---ACAATCCTGA 457
consensus_6547#3 AGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGTTCAGA 460
consensus_6547#0 AGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGA 464
consensus_6547#2 AGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGA 322
* * ** ** * ** * ** * * ** * * *** * **
consensus_6547#1 TCGTCGTGTTTGTGCTAGCCACCCAGGGCAACATAACACTCCCCCCTCCACCGGGTGAAC 517
consensus_6547#3 CAATCA-GCATGCCCGTCTTACCGGAGCCGCCGT--CACCTCCAACGGCATCGAGTGTGC 517
consensus_6547#0 CAATCA-GCATGCCCGGCTTACCGGAGCCGCCGT--CACCTCCAACGGCATCGAGTGTGC 521
consensus_6547#2 CAATCA-GCATGCCCGGCTTACCGGAGCCGCCGT--CACCTCCAACGGCATCGAGTGTGC 379
** * ** * *** * * * * *** ** * ** ** *** *
consensus_6547#1 C--------TATCGCCCATCATCACCGTACCGGTGCGGTCGTCGCAAACGGTGCCGAGTG 569
consensus_6547#3 ------------------------------------------------------------
consensus_6547#0 CGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAAC 581
consensus_6547#2 CGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAAC 439
consensus_6547#1 TGCCGCGATCGGGGCCCAAATCCTGCGCCAGAATG-GTACCGCCGCCGACGCTGCCATCG 628
consensus_6547#3 ------------------------------------------------------------
consensus_6547#0 ACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCA-TGGGTCTCGGCGGTGGCTTCCTGG 640
consensus_6547#2 ACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCCTCGGCGGTGGCTTCCTGG 499
consensus_6547#1 CAACGCTGTTCTGCGAAGGCGT-GACCTGCCCGCAAAGTATGGGCCTGGGCGGTGGCTTT 687
consensus_6547#3 ------------------------------------------------------------
consensus_6547#0 CCACGATCTACATCCGCGACACCAACACGGCCGTGGCGT-TGGACGCACGCGAAGTGGCA 699
consensus_6547#2 CCACGATCTACATCCGCGACACCAACACGGCCGTGGCGT-TGGACGCACGCGAAGTGGCA 558
consensus_6547#1 CTGCTGACCATCTA-------------- 701
consensus_6547#3 ----------------------------
consensus_6547#0 CCGGCCGCC------------------- 708
consensus_6547#2 CCGGCCGCCGCCACCAAGGACATGTACG 586
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||