cluster # 6553

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Anopheles gambiae
cluster # 6553 cluster # 6553 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6553#0 length = 983 sequences # 3

consensus_6553#1 length = 445 sequences # 2

consensusID : consensus_6553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 983
fasta sequence

                              [AGATCCCCCGAGGTTNTTAAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCCGCGAACGGCGAGAGTGCCGCCGTTCCCGTGCACCATCAGGCGACGGCACAAGCGCGCACGCTGCTACTTGCCGCACCGATCACCAACGGACATACCCTATTCGGAACCATTCCAGTTTCGTTCGGCAGCGGTGCGAGCTTGCACCCGCGTACGAGCGCTTCCGTTGTCCAGTCGATTACGACGACGTCCTGCGTGAACCAAACGGTGCACGGGCACGCGTCGCTCAATCACAGCAATGGGCCGACCTCGGCGACTGTCACCGGCACAGCCGCAGCCAATCTCCAGTAGGAAAATAAATTTACAGTAACTTGTATACATGTTAGGAGCTCTTTAGACCTATTTATGAGACGCAAGCGGACAGAGAGAATCTGAGTGGCAATTATACTTTTGTTTCCTCTTCATAGCTTTCATTTNCGCAATCCGCTTTTCCACAACGGCTTTTATTCATGTTACATTTTGTCTTACGTCTGAACTGATACACATTCGACGAGAAATGTAAATAATTATGCAGACTACGTTGATTTTGCTGTTTTGTTTTGCTGGTTTCGCTCGTTCCTTACTGTGGCAAGACAAATTCCTGTCCGTCTTGATTGACCTGGATAAAACTCACCTACAGTTTCAGATTATGTACTCTTT-TGCTCTGCTTGATCGAGCTTACAAGGTAACACTGTGATGTGTGAGTCGAGATGAGCTTGAATGTGTT-AA-TTTATTCCTCTGTTCCATACGTAACATGCTTTACAGTTCTCGTTCCATACGACTGTGGGTCGTTATGCGAAACTAAACCTTGGTGGCTTAGAAATTATTATTTTTAATACAACAACAACAACAAAAACATCGCATCATGTCTCTCTTAAGTACATAGATTGGCGTTGTACATATCTTTACGAATAAAAAAAATATGACTCAACGAAATGGAGAAAAAA]

[+] EMBL AL933044             [AGATCCCCCGAGGTTNTTAAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCCGCGAACGGCGAGAGTGCCGCCGTTCCCGTGCACCATCAGGCGACGGCACAAGCGCGCACGCTGCTACTTGCCGCACCGATCACCAACGGACATACCCTATTCGGAACCATTCCAGTTTCGTTCGGCAGCGGTGCGAGCTTGCACCCGCGTACGAGCGCTTCCGTTGTCCAGTCGATTACGACGACGTCCTGCGTGAACCAAACGGTGCACGGGCACGCGTCGCTCAATCACAGCAATGGGCCGACCTCGGCGACTGTCACCGGCACAGCCGCAGCCAATCTCCAGTAGGAAAATAAATTTACAGTAACTTGTATACATGTTAGGAGCTCTTTAGACCTATTTATGAGACGCAAGCGGACAGAGAGAATCTGAGTGGCAATTATACTTTTGTTTCCTCTTCATAGCTTTCATTTNCGCAATCCGCTTTTCCACAACGGCTTTTATTCATGTTACATTTTGTCTTACGTCTGAACTGATACACATTCGACGAGAAATGTAAATAATTATGCAGACTACGTTGATTTTGCTGTCTTGTCTTGCTGGTTTCGCTCGTTCCTTACTGTGGCAAGACAAATTCCTGTCCGTCTTGATTGACCTGGATAAAACTCACCTACAGTTTCAGATTATGTACTCTTTATGCTCTGCTTGATCGAGCTTACAAGGTAACACTGTGATGTGTGAGTCGAGATGAGCTTGAATGTGTTCAACTTTATTCCTCTGTTC                                                                                                                                                                                                           ]
[+] EMBL AGA282473            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGG TTTTATT ATGTTACATTTTGTCTTACGTCTGAACTGATACACATTCGACGAGAAATGTAAATAATTATGCAGACTACGTTGATTTTGCTGTTTTGTTTTGCTGGTTTCGCTCGTTCCTTACTGTGGCAAGACAAATTCCTGTCCGTCTTGATTGACCTGGATAAAACTCACCTACAGTTTCAGATTATGTACTCTTT TGCTCTGCTTGATCGAGCTTACAAGGTAACACTGTGATGTGTGAGTCGAGATGAGCTTGAATGTGTT AA TTTATTCCTCTGTTCCATACGTAACATGCTTTACAGTTCTCGTTCCATACGACTGTGGGTCGTTATGCGAAACTAAACCTTGGTGGCTTAGAAATTATTATTTTTAATACAACAACAACAACAAAAACATCGCATCATGTCTCTCTTAAG                                                                    ]
[-] EMBL AGA280845            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTAACATTTTGTCTTACGTCTGAACTGATACACATTCGACGAGAAATGTAAATAATTATGCAGACTACGTTGATTTTGCTGTTTTGTTTTGCTGGTTTCGCTCGTTCCTTACTGTGGCAAGACAAATTCCTGTCCGTCTTGATTGACCTGGATAAAACTCACCTACAGTTTCAGATTATGTACTCTTT TGCTCTGCTTGATCGAGCTTACAAGGTAACACTGTGATGTGTGAGTCGAGATGAGCTTGAATGTGTT AA TTTATTCCTCTGTTCCATACGTAACATGCTTTACAGTTCTCGTTCCATACGACTGTGGGTCGTTATGCGAAACTAAACCTTGGTGGCTTAGAAATTATTATTTTTAATACAACAACAACAACAAAAACATCGCATCATGTCTCTCTTAAGTACATAGATTGGCGTTGTACATATCTTTACGAATAAAAAAAATATGACTCAACGAAATGGAGAAAAAA]




>consensus_6553#0
AGATCCCCCGAGGTTNTTAAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCC
GCGAACGGCGAGAGTGCCGCCGTTCCCGTGCACCATCAGGCGACGGCACAAGCGCGCACG
CTGCTACTTGCCGCACCGATCACCAACGGACATACCCTATTCGGAACCATTCCAGTTTCG
TTCGGCAGCGGTGCGAGCTTGCACCCGCGTACGAGCGCTTCCGTTGTCCAGTCGATTACG
ACGACGTCCTGCGTGAACCAAACGGTGCACGGGCACGCGTCGCTCAATCACAGCAATGGG
CCGACCTCGGCGACTGTCACCGGCACAGCCGCAGCCAATCTCCAGTAGGAAAATAAATTT
ACAGTAACTTGTATACATGTTAGGAGCTCTTTAGACCTATTTATGAGACGCAAGCGGACA
GAGAGAATCTGAGTGGCAATTATACTTTTGTTTCCTCTTCATAGCTTTCATTTNCGCAAT
CCGCTTTTCCACAACGGCTTTTATTCATGTTACATTTTGTCTTACGTCTGAACTGATACA
CATTCGACGAGAAATGTAAATAATTATGCAGACTACGTTGATTTTGCTGTTTTGTTTTGC
TGGTTTCGCTCGTTCCTTACTGTGGCAAGACAAATTCCTGTCCGTCTTGATTGACCTGGA
TAAAACTCACCTACAGTTTCAGATTATGTACTCTTTTGCTCTGCTTGATCGAGCTTACAA
GGTAACACTGTGATGTGTGAGTCGAGATGAGCTTGAATGTGTTAATTTATTCCTCTGTTC
CATACGTAACATGCTTTACAGTTCTCGTTCCATACGACTGTGGGTCGTTATGCGAAACTA
AACCTTGGTGGCTTAGAAATTATTATTTTTAATACAACAACAACAACAAAAACATCGCAT
CATGTCTCTCTTAAGTACATAGATTGGCGTTGTACATATCTTTACGAATAAAAAAAATAT
GACTCAACGAAATGGAGAAAAAA

consensusID : consensus_6553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 445
fasta sequence

                              [GCCCGAGGTTAGCATAGCGAAGAAATCGGTCCTAGGCACGATGCTTATCGAGAGCACGTATCGGTTAAACCAGTCACTTCCGGCGGCCCTTACGAACGGGCGTCATCTGGAAGAGCTTGCCGCACCGCTGTACCTGTACGGGAACTGCAGCCAAACGGCAGCAGTGAATATTGTCGACGAGACGCCACCGCTCGCCAACGGCAATCGATTCGGCACCGCCCGAAAGGGCAGCAGTTTGCCGTCGAAGGAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCCGCGAACGGCGAGAGTGCCGCCGTTCCCCTGCACCATCAGGCGACGGCACAGGCGCGCACGCTGCTCCTTGCCGCACCGATCACCAACGGTCATACCCTATTCGGAACCATTCCAGTTTCGTTCGGCAGCGGTGCGAGCTTGCACCCGCGTACGAGC]

[+] EMBL AL930859             [GCCCGAGGTTAGCATAGCGAAGAAATCGGTCCTAGGCACGATGCTTATCGAGAGCACGTATCGGTTAAACCAGTCACTTCCGGCGGCCCTTACGAACGGGCGTCATCTGGAAGAGCTTGCCGCACCGCTGTACCTGTACGGGAACTGCAGCCAAACGGCAGCAGTGAATATTGTCGACGAGACGCCACCGCTCGCCAACGGCAATCGATTCGGCACCGCCCGAAAGGGCAGCAGTTTGCCGTCGAAGGAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCCGCGAACGGCGAGAGTGCCGCCGTTCCCCTGCACCATCAGGCGACGGCACAGGCGCGCACGCTGCTCCTTGCCGCACCGATCACCAACGGTCATACCCTATTCGGAACCATTCCAGTTTC                                     ]
[+] EMBL BX618702             [                                                                      CAGTCACTTCCGGCGGCCCTTACGAACGGGCGTCATCTGGAAGAGCTTGCCGCACCGCTGTACCTGTACGGGAACTGCAGCCAAACGGCAGCAGTGAATATTGTCGACGAGACGCCACCGCTCGCCAACGGCAATCGATTCGGCACCGCCCGAAAGGGCAGCAGTTTGCCGTCGAAGGAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCCGCGAACGGCGAGAGTGCCGCCGTTCCCGTGCACCATCAGGCGACGGCACAAGCGCGCACGCTGCTACTTGCCGCACCGATCACCAACGGACATACCCTATTCGGAATCATTCCAGTTTCGTTCGGCAGCGGTGCGAGCTTGCACCCGCGTACGAGC]




>consensus_6553#1
GCCCGAGGTTAGCATAGCGAAGAAATCGGTCCTAGGCACGATGCTTATCGAGAGCACGTA
TCGGTTAAACCAGTCACTTCCGGCGGCCCTTACGAACGGGCGTCATCTGGAAGAGCTTGC
CGCACCGCTGTACCTGTACGGGAACTGCAGCCAAACGGCAGCAGTGAATATTGTCGACGA
GACGCCACCGCTCGCCAACGGCAATCGATTCGGCACCGCCCGAAAGGGCAGCAGTTTGCC
GTCGAAGGAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCCGCGAACGGCGA
GAGTGCCGCCGTTCCCCTGCACCATCAGGCGACGGCACAGGCGCGCACGCTGCTCCTTGC
CGCACCGATCACCAACGGTCATACCCTATTCGGAACCATTCCAGTTTCGTTCGGCAGCGG
TGCGAGCTTGCACCCGCGTACGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6553#0      AGATCCCCCGAGGTTNTTAAGAACGTGATGAACGGGTTTGGGGGCACTGGCGGCAGCCCC 60
consensus_6553#1      ------------------------------------------------------------
                                                                                  

consensus_6553#0      GCGAACGGCGAGAGTGCCGCCGTTCCCGTGCACCATCAGGCGACGGCACAAGCGCGCACG 120
consensus_6553#1      ----------------------------------GCCCGAGGTTAGCATA-GCGAAGAAA 25
                                                          * *  *   *** * ***   *  

consensus_6553#0      CTGCTACTTGCCGCACCGATCACCAACGGACATACCCTATTCGGAACCATTCCAGTTTCG 180
consensus_6553#1      TCGGTCCTAGGCACGATGCTTATCGA-GAGCACGTATCGGTTAAA------CCAGTCACT 78
                        * * ** * * *   * * * * * *  **        *   *      *****  * 

consensus_6553#0      TTCGGCAGCGGT-GCGAGCTTGCACCCGCGTACGAGCGCTTCCGTTGTCCAGTCGATTAC 239
consensus_6553#1      TCCGGCGGCCCTTACGAACGGGCGTC-ATCTGGAAGAGCTT--GCCGCACCGCTGTACCT 135
                      * **** **  *  *** *  **  *    *   ** ****  *  *  * *  *     

consensus_6553#0      GACGACGTCCTGCGTGAACCAAACGGTGCACGGGCACGCGTCGCTCAATCACAGCAATGG 299
consensus_6553#1      GTACGGGAACTGC---AGCCAAACGGCA---------GCAGTGAATATTGTCGACGAGAC 183
                      *     *  ****   * ********           **   *   * *  *  * *   

consensus_6553#0      GCCGAC-CTCGGCGACTGTCACCGGCACAGCCGCAGCCAATCTCCAGTAGGAAAATAAAT 358
consensus_6553#1      GCCACCGCTCGCCAACGGCAATCGATTCGGC--------ACCGCCCGAAAGGGCAGCAGT 235
                      ***  * **** * ** *  * **   * **        * * ** * * *   *  * *

consensus_6553#0      TTACAGTAACTTGTATACATGTTAGGAGCTCTTTAGACCTATTTATGAGACGCAAGCGGA 418
consensus_6553#1      TTGCCGTCGAAGGAGAACGTGAT-GAACGGGTTTGGGGGCACTGGCGGCAGCCCCGCGAA 294
                      ** * **     *   ** ** * * *    *** *    * *   *  *  *  *** *

consensus_6553#0      CAGAGAGAATCTGAGTGGCAATTATACTTTTGTTTCCTCTTCATAGCTTTCATTTNCGCA 478
consensus_6553#1      CGGCGAGAGT-------GCCGCCGTTCCCCTGCACCATCAGGCGACGGCACAGGCGCGCA 347
                      * * **** *       **     * *   **   * **     *     **    ****

consensus_6553#0      ATCCGCTTTTCCACAACGGCTTTTATTCATGTTACATTTTGTCTTACGTCTGAACTGATA 538
consensus_6553#1      CGCTGCTCCTT-GCCGCACCGATCACCAACG----GTCATACCCTAT-TCGGAACCATTC 401
                        * ***  *   *  *  *  * *   * *     *  *  * **  ** ****   * 

consensus_6553#0      CACATTCGACGAGAAATGTAAATAATTATGCAGACTACGT-TGATTTTGCTGTTTTGTTT 597
consensus_6553#1      CAGTTTCGTTCGGCAGCG-GTGCGAGCTTGCAC-CCGCGTACGAGC-------------- 445
                      **  ****    * *  *      *   ****  *  ***  **                

consensus_6553#0      TGCTGGTTTCGCTCGTTCCTTACTGTGGCAAGACAAATTCCTGTCCGTCTTGATTGACCT 657
consensus_6553#1      ------------------------------------------------------------
                                                                                  

consensus_6553#0      GGATAAAACTCACCTACAGTTTCAGATTATGTACTCTTTTGCTCTGCTTGATCGAGCTTA 717
consensus_6553#1      ------------------------------------------------------------
                                                                                  

consensus_6553#0      CAAGGTAACACTGTGATGTGTGAGTCGAGATGAGCTTGAATGTGTTAATTTATTCCTCTG 777
consensus_6553#1      ------------------------------------------------------------
                                                                                  

consensus_6553#0      TTCCATACGTAACATGCTTTACAGTTCTCGTTCCATACGACTGTGGGTCGTTATGCGAAA 837
consensus_6553#1      ------------------------------------------------------------
                                                                                  

consensus_6553#0      CTAAACCTTGGTGGCTTAGAAATTATTATTTTTAATACAACAACAACAACAAAAACATCG 897
consensus_6553#1      ------------------------------------------------------------
                                                                                  

consensus_6553#0      CATCATGTCTCTCTTAAGTACATAGATTGGCGTTGTACATATCTTTACGAATAAAAAAAA 957
consensus_6553#1      ------------------------------------------------------------
                                                                                  

consensus_6553#0      TATGACTCAACGAAATGGAGAAAAAA 983
consensus_6553#1      --------------------------