cluster # 6557

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Anopheles gambiae
cluster # 6557 cluster # 6557 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6557#0 length = 1063 sequences # 4

consensus_6557#1 length = 448 sequences # 1

consensusID : consensus_6557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1063
fasta sequence

                              [TCTATGTTTTACGATTGAAATCTATCTATTTGCCGAACAGTTTGCCCGTTTGCCGATCCTTAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCCGTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCCGCGCAGTGTACACGGTTTTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTTTAGAGGTGAAATCTTTAACCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAG-AAAAAAAAACGTTCACATTTGTCATAGAAAACATTTCTATAACTTTTTTTTCTCTCCCAATCTTATTGGTTGACACACTTGCTGTCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTC--TTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTTTATGGCGATTTGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCA-GGGTGTCCGAACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGTATGAACGATT---AAAAAAACAATACAGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAAATTCAACAATTGTACATTACAACAGGCTCTAGTAGTAGTAGTAGCAATAGTGGGAGCAAATGGGGCATGGGGATTCGTTGCACAAGTTATTGCACTCTTAGAAGATAAAAAATGGTTTAAAGAGTTGCCCCGGCATTCTCCAACAGTCGCTTCGACCTATTGCAAACCTGCACTTGGCTGTCCCCTGTATTGCTACTATTTCCCTATAAAAGAAAAACGTTCAGTAAAAAAACGAAATGAATAAAATCTAACAACTACGTACCCTAACCTTGAAAACGTGTCATTCTTTTACTTGCGTAATGT]

[+] EMBL CNS08IH0             [TCTATGTTTTACGATTGAAATCTATCTATTTGCCGAACAGTTTGCCCGTTTGCCGATCCTTAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCCGTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCCGCGCAGTGTACACGGTTTTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTTTAGAGGTGAAATCTTTAACCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAGAAAAAAAAAACGTTCACTTTTGTCATAGAAAACATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX615063             [                    TCTATCTATTTGCCGAACAGTTTGCCTTTTTGCCGATCCTTAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCCGTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCTGCGCAGTGTACACGGTGTTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTGTAGAGGTGAAATCTTTAACCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAACAG   AAAAAAACGTTCACATTTGTCACATAAACCATTTCTATAACTTTTTTTTCTCTCCCAATCTTATTGGTTGACACACTTGCTGTCCTTTTACTCGTTTTGAAGGATAGAAAGTATTTTACGTTC  TTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACGT GTTTTCTGTTTATGTTTATGGCGATTTGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCA GGGTGTCCGAACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGT                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BX628833             [                                                                                                                                                                                                                                                                     AGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAACGGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAG AAAAAAAAACGTTCACATTTGTCATAGAAAACATTTCTATAACTATTTTTCCTCTCCCAATCTTATTGGTTGACACACTTGCTGTCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTCTTTTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTTTATGGCGATTTGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCA GGGTGTCCGAACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGTATGAACGATT   AAAAAAACAATACAGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAAATTCAACAATTGTACATTACAACAGGCTCTAGTAGTAGTAGTAGCAATAGTGGGAGCAAATGGGGCATGGGGATTCGTTGCACAAGTTATTGCACTCTTAGAAGATAA                                                                                                                                                                                                   ]
[-] EMBL BX626722             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTC  TTTTTTTTAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTTTATGGCGATTTTTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCCTCAGGGGTGTCCGAACTGGTCATTTTCATCAATTTTCCCTCAGTATTTTATCTATGACACGAAATACCCTAGAAAACCTTATTGGCCAATAGTATGAACGATTAAAAAAAAAACAATACAGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAAATTCAACAATTGTACATTACAACAGACTCTAGTAGTAGTAGTAGCAATAGTGGGAGCAAATGGGGCATGGGGATTCGTTGCACAAGTTATTGCACTCTTAGAAGATAAAAAATGGTTTAAAGAGTTGCCCCGGCATTCTCCAACAGTCGCTTCGACCTATTGCAAACCTGCACTTGGCTGTCCCCTGTATTGCTACTATTTCCCTATAAAAGAAAAACGTTCAGTAAAAAAACGAAATGAATAAAATCTAACAACTACGTACCCTAACCTTGAAAACGTGTCATTCTTTTACTTGCGTAATGT]




>consensus_6557#0
TCTATGTTTTACGATTGAAATCTATCTATTTGCCGAACAGTTTGCCCGTTTGCCGATCCT
TAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCC
GTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCCGCGCAGTGTACACGGTT
TTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTTTAGAGGTGAAATCTTTAA
CCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAAC
GGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAGAAAAAAAAACGT
TCACATTTGTCATAGAAAACATTTCTATAACTTTTTTTTCTCTCCCAATCTTATTGGTTG
ACACACTTGCTGTCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTCTTTTTTT
TAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTT
TATGGCGATTTGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTCCC
TCAGGGTGTCCGAACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATGACACG
AAATACCCTAGAGAACCTTGTTTGCCAATAGTATGAACGATTAAAAAAACAATACAGTTC
TCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAAATTCAACAATTGTACATTAC
AACAGGCTCTAGTAGTAGTAGTAGCAATAGTGGGAGCAAATGGGGCATGGGGATTCGTTG
CACAAGTTATTGCACTCTTAGAAGATAAAAAATGGTTTAAAGAGTTGCCCCGGCATTCTC
CAACAGTCGCTTCGACCTATTGCAAACCTGCACTTGGCTGTCCCCTGTATTGCTACTATT
TCCCTATAAAAGAAAAACGTTCAGTAAAAAAACGAAATGAATAAAATCTAACAACTACGT
ACCCTAACCTTGAAAACGTGTCATTCTTTTACTTGCGTAATGT

consensusID : consensus_6557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [CTACGTTTGCTTCAGCTCCTATGGACCCACCCTGTATTANATTANGCCCCTGTTAGGACGGAATATCNCTTGGTTTNGCCCCATAACCCNNCGTGACNGTCACCGGATCTTTTCGNCATTCGCTNANATCCATCACTGATCAGGTTGCTTCGTTAGTTGCGCTCCGGGTCATGCATGGNACGTACGCTGCTACAGAAACTCGCTACNAGNANTAGAAATTTCANATCACTANTNTGCTACCATTACCAACCAGGGCTNCTACGTANGTAAGTAGTAGCAAATAGTGGGACGCAATACTGGGGCATGGGGATTCGTTGCACCCNGTTATTGCACTCTTAGAAGATAAAAAAATGGTTTAAAGAGTTGCCCCGGCTTTCTGCGACAGTCGCTTCGACCTATTGTAAACCTGCACTTGGCTGTACCNACCCTCGTGCCGATTCTGCTGAAA]

[-] EMBL BX469367             [CTACGTTTGCTTCAGCTCCTATGGACCCACCCTGTATTANATTANGCCCCTGTTAGGACGGAATATCNCTTGGTTTNGCCCCATAACCCNNCGTGACNGTCACCGGATCTTTTCGNCATTCGCTNANATCCATCACTGATCAGGTTGCTTCGTTAGTTGCGCTCCGGGTCATGCATGGNACGTACGCTGCTACAGAAACTCGCTACNAGNANTAGAAATTTCANATCACTANTNTGCTACCATTACCAACCAGGGCTNCTACGTANGTAAGTAGTAGCAAATAGTGGGACGCAATACTGGGGCATGGGGATTCGTTGCACCCNGTTATTGCACTCTTAGAAGATAAAAAAATGGTTTAAAGAGTTGCCCCGGCTTTCTGCGACAGTCGCTTCGACCTATTGTAAACCTGCACTTGGCTGTACCNACCCTCGTGCCGATTCTGCTGAAA]




>consensus_6557#1
CTACGTTTGCTTCAGCTCCTATGGACCCACCCTGTATTANATTANGCCCCTGTTAGGACG
GAATATCNCTTGGTTTNGCCCCATAACCCNNCGTGACNGTCACCGGATCTTTTCGNCATT
CGCTNANATCCATCACTGATCAGGTTGCTTCGTTAGTTGCGCTCCGGGTCATGCATGGNA
CGTACGCTGCTACAGAAACTCGCTACNAGNANTAGAAATTTCANATCACTANTNTGCTAC
CATTACCAACCAGGGCTNCTACGTANGTAAGTAGTAGCAAATAGTGGGACGCAATACTGG
GGCATGGGGATTCGTTGCACCCNGTTATTGCACTCTTAGAAGATAAAAAAATGGTTTAAA
GAGTTGCCCCGGCTTTCTGCGACAGTCGCTTCGACCTATTGTAAACCTGCACTTGGCTGT
ACCNACCCTCGTGCCGATTCTGCTGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6557#0      TCTATGTTTTACGATTGAAATCTATCTATTTGCCGAACAGTTTGCCCGTTTGCCGATCCT 60
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      TAGGATGACAGTTGCTGGGCTGTGTGTAGTATCTCTCGTCGCGGTTTGCACTTGGTTTCC 120
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      GTTGCGTTTTCATATTACATACATCCTATTATAAGCCTACGCCGCGCAGTGTACACGGTT 180
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      TTTCCAGCTTGCCGCTGTCTCTGCATATTGCGCATGTGTGTTTAGAGGTGAAATCTTTAA 240
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      CCGTGCATTAACATTTACAACAGCAAATATATAGAGAAACGGAGCGAAAACGGAAACAAC 300
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      GGCAACATGCATCCTGTCTTATCAATACACAACACGACAAAGAAAAAGAAAAAAAAACGT 360
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      TCACATTTGTCATAGAAAACATTTCTATAACTTTTTTTTCTCTCCCAATCTTATTGGTTG 420
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      ACACACTTGCTGTCCTTTTACTTGTTTTGAAGGATAGAAAGTATTTTACGTTCTTTTTTT 480
consensus_6557#1      ------------------------------------------------------------
                                                                                  

consensus_6557#0      TAATGCTACATTTGCGCGTCTAGAGGTAGCGCTGCTTGCACATGGTTTTTTGTTTATGTT 540
consensus_6557#1      -----------------------------------------------------CTACGTT 7
                                                                            ** ***

consensus_6557#0      TATGGCGATT--TGTTCTCTTACTATATAATCTCTCCCGCAAGTGTTTGGGGTTCGTCTC 598
consensus_6557#1      TGCTTCAGCTCCTATGGACCCACCCTGTATTANATTANGCCCCTGTTAGGACGGAATATC 67
                      *    *   *  * *   *  **  * ** *   *   **   **** **      * **

consensus_6557#0      CCTCAGGGTGTCCG---AACTGGTCATTTTTATCAATTTTCCCTCAGTATTTTATCTATG 655
consensus_6557#1      NCTTGGTTTNGCCCCATAACCCNNCGTGACNGTCACCGGATCTTTTCGNCATTCGCTNAN 127
                       **  *  *  **    ***    * *     ***      * *       **  **   

consensus_6557#0      ACACGAAATACCCTAGAGAACCTTGTTTGCCAATAGTATGAACGATTAAAAAAACAATAC 715
consensus_6557#1      ATCCATCACTGATCAGGTTGCTTCGTTAGTTG-CGCTCCGGGTCATGCATGGNACG-TAC 185
                      *  *   *      **    * * *** *       *  *    **  *    **  ***

consensus_6557#0      AGTTCTCGTAGTCGTCGGCACAGGAGAGTGTAAAATGTAAAATAA-ATTCAACAATTGTA 774
consensus_6557#1      GCTGCTACAGAAACTCGCTACNAGN-ANTAGAAATTTCANATCACTANTNTGCTACCATT 244
                        * **        ***  **  *  * *  *** *  * *  *  * *   * *   * 

consensus_6557#0      CATTACAACAGGCTCTA-GTAGT--AGTAGTAGCAA-TAGTGGGA-GCAAA--TGGGGCA 827
consensus_6557#1      ACCAACCAGGGCTNCTACGTANGTAAGTAGTAGCAAATAGTGGGACGCAATACTGGGGCA 304
                          ** *  *   *** ***    *********** ******** ****   *******

consensus_6557#0      TGGGGATTCGTTGCACA-AGTTATTGCACTCTTAGAAGATAAAAAA-TGGTTTAAAGAGT 885
consensus_6557#1      TGGGGATTCGTTGCACCCNGTTATTGCACTCTTAGAAGATAAAAAAATGGTTTAAAGAGT 364
                      ****************   *************************** *************

consensus_6557#0      TGCCCCGGCATTCTCCAACAGTCGCTTCGACCTATTGCAAACCTGCACTTGGCTGTCCCC 945
consensus_6557#1      TGCCCCGGCTTTCTGCGACAGTCGCTTCGACCTATTGTAAACCTGCACTTGGCTGTACCN 424
                      ********* **** * ******************** ****************** ** 

consensus_6557#0      TGTATTGCTACTATTTCCCTATAAAAGAAAAACGTTCAGTAAAAAAACGAAATGAATAAA 1005
consensus_6557#1      ACCCTCGTGCCGATTCTGCTGAAA------------------------------------ 448
                          * *   * ***   **  **                                    

consensus_6557#0      ATCTAACAACTACGTACCCTAACCTTGAAAACGTGTCATTCTTTTACTTGCGTAATGT 1063
consensus_6557#1      ----------------------------------------------------------