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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence
[TAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTCCAGGCATACTTAATAAAACCATCATCGTGCCAAACATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGCGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGAC]
[+] EMBL BX605965 [TAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTCCAGGCATACTTAATAAAACCATCATCGTGCCAAACATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGCGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGAC ]
[+] EMBL BX625990 [ GTACCGTGAAATACTGGNACNCGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTCCAGGCATACTTAATAAAACCATCATCGTGCCAAACATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAAGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGAC]
consensusID : consensus_6563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CGACCCACGCGTCCGCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCGATAATTCGTACGATCGTCTGCCAGACAGTGACGCTGACTGCTACAAAGGCCAGTTCGGATTACTTGAGGATGGAATGACGGACACCTCCAATGTTCCCCATGATGTTCCAATCGTAGCTACAAGTCCACACTTTTATGCACGCAACTTCTCCAACGCCCATAAGATT]
[+] EMBL BM648020 [CGACCCACGCGTCCGCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCGATAATTCGTACGATCGTCTGCCAGACAGTGACGCTGACTGCTACAAAGGCCAGTTCGGATTACTTGAGGATGGAATGACGGACACCTCCAATGTTCCCCATGATGTTCCAATCGTAGCTACAAGTCCACACTTTTATGCACGCAACTTCTCCAACGCCCATAAGATT]
consensusID : consensus_6563#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGCGTTCCTGCAGCAAACATCTTATCGCGGCCCGGGTTATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCCGATAATTCGTACGATCGTCTGCCCGACAGTGACGCTGA]
[+] EMBL BM601682 [CCGCGGACGCGTGGGCGGACGCGTGGGGCGTTCCTGCAGCAAACATCTTATCGCGGCCCGGGTTATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCCGATAATTCGTACGATCGTCTGCCCGACAGTGACGCTGA]
consensusID : consensus_6563#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[GCAGAATCCGCACGAGTGCGAATATTCATCTTCAATGTAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTTCCCAGGCATACTTAATAAAGACCATCATCGTGCCCAAGACCAATTTCATTGCGTTGGTGTAAGCCGGCGGAGGATGGAAAAACGACCAAACTTCTTTCATGAAGCGAAGGATTCAAGTTGTCATTTACTCCATGTCTGGGGATACTGTATTCNAGCCGCATGACAATCTATGACTAGCTTATGGAACACGAGGACCAGCCGAGTNTGCTTGGGACCCAGGGCTAGGCAACGAGGTTCGACGGTCAC]
[+] EMBL BX468797 [GCAGAATCCGCACGAGTGCGAATATTCATCTTCAATGTAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTTCCCAGGCATACTTAATAAAGACCATCATCGTGCCCAAGACCAATTTCATTGCGTTGGTGTAAGCCGGCGGAGGATGGAAAAACGACCAAACTTCTTTCATGAAGCGAAGGATTCAAGTTGTCATTTACTCCATGTCTGGGGATACTGTATTCNAGCCGCATGACAATCTATGACTAGCTTATGGAACACGAGGACCAGCCGAGTNTGCTTGGGACCCAGGGCTAGGCAACGAGGTTCGACGGTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6563#0 ------------------------------------------------------------
consensus_6563#3 ------------------------------------------------------------
consensus_6563#1 ------------------------------------------------------------
consensus_6563#2 CCGCGGACGCGTGGGCGGACGCGTGGGGCGTTCCTGCAGCAAACATCTTATCGCGGCCCG 60
consensus_6563#0 ------------------------------------------------------------
consensus_6563#3 -----------------------------------------GCAGAATCCGCACGAGTGC 19
consensus_6563#1 -----------------------------------CGACCCACG-CGTCCGCATGAA-GC 23
consensus_6563#2 GGTTATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAA-GC 119
consensus_6563#0 ------------------TAACCAACTCCGA--ACGTTGGTTGGGTGGGCTAGACGATC- 39
consensus_6563#3 GAATATTCATCTTCAATGTAACCAACTCCGA--ACGTTGGTTGGGTGGGCTAGACGATC- 76
consensus_6563#1 GAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCT 83
consensus_6563#2 GAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCT 179
*** ** * * ** * ** *** ***
consensus_6563#0 --AGCTTAAAATGCAAGAAGTGGTT-CCAATCGTGTACCGTG--AAATACTGGAACACGA 94
consensus_6563#3 --AGCTTAAAATGCAAGAAGTGGTT-CCAATCGTGTACCGTG--AAATACTGGAACACGA 131
consensus_6563#1 ATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGG 143
consensus_6563#2 ATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGG 239
** *** ** * * * *** ** ** *** * * * * * * **
consensus_6563#0 CAACGTTACCTTCC----ACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTC 150
consensus_6563#3 CAACGTTACCTTCC----ACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTC 187
consensus_6563#1 GAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATC 203
consensus_6563#2 GAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATC 299
** * * ** ** * * * * * * * * ***** * **
consensus_6563#0 TAGTGTTTTTACCCGATCGTAATGTT--CCAGGCATACTTAATAAA--ACCATCATCGTG 206
consensus_6563#3 TAGTGTTTTTACCCGATCGTAATGTTTCCCAGGCATACTTAATAAAG-ACCATCATCGTG 246
consensus_6563#1 ACGTAAATGTACGGCATGG-AAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACT 262
consensus_6563#2 ACGTAAATGTACGGCATGG-AAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACT 358
** * *** ** * ** * * * ** * *** * ** * *
consensus_6563#0 CCAAACA----TTTCATTGC-TTGG--TGTA-GCCGC--GAGGATGGAAAA-CGAC--AA 253
consensus_6563#3 CCCAAGACCAATTTCATTGCGTTGG--TGTAAGCCGGCGGAGGATGGAAAAACGACCAAA 304
consensus_6563#1 TACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCC 322
consensus_6563#2 TACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCC 418
* ** * ** * * * *** * *
consensus_6563#0 CTTCTT-CATGAAGCGA-GGATTCAATTT--CATTTACTCCATGT---CTGGGGATACTG 306
consensus_6563#3 CTTCTTTCATGAAGCGAAGGATTCAAGTTGTCATTTACTCCATGT---CTGGGGATACTG 361
consensus_6563#1 ATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTG 382
consensus_6563#2 ATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTG 478
**** * *** *** * * ** * * * * ***
consensus_6563#0 TATTCA-GCCGCATGACAATCTAT--GACTA-CTTATGGAACACGAGACCACCATTCTTG 362
consensus_6563#3 TATTCNAGCCGCATGACAATCTAT--GACTAGCTTATGGAACACGAGG--ACCAGCC--- 414
consensus_6563#1 ATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAG 442
consensus_6563#2 ATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAG 538
* * **** **** *** * * * * ** ** *
consensus_6563#0 GA--CCAGGCTAG-AAAGTTTGTCCCGGGAATGGTGCCATCAGATAAT-GTGGGCGTTTT 418
consensus_6563#3 GA--GTNTGCTTG-GGA------CCCAGGGCTAG-GCAACGAGGTTCG-ACGGTCAC--- 460
consensus_6563#1 AAAGGTCCACTAACGGGGTATAAGTACGTGCTACCC-GATAA--TTCGTACGATCGTCTG 499
consensus_6563#2 AAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCCGATAA--TTCGTACGATCGTCTG 596
* ** * * * * * * *
consensus_6563#0 GAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGG 478
consensus_6563#3 ------------------------------------------------------------
consensus_6563#1 CCAGACAGTGACGCTGACTGCTACAAAGGCCAGTTCGGATTACTTGAGGATGGAATGACG 559
consensus_6563#2 CCCGACAGTGACGCTGA------------------------------------------- 613
consensus_6563#0 CGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAG 538
consensus_6563#3 ------------------------------------------------------------
consensus_6563#1 GACACCTCCAATGTTCCCCATGATGTTCCAATCGTAGCTACAAGTCCACACTTTTATGCA 619
consensus_6563#2 ------------------------------------------------------------
consensus_6563#0 TCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCC 598
consensus_6563#3 ------------------------------------------------------------
consensus_6563#1 CGCAACTTCTCCAACGCCCATAAGATT--------------------------------- 646
consensus_6563#2 ------------------------------------------------------------
consensus_6563#0 ACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGT 658
consensus_6563#3 ------------------------------------------------------------
consensus_6563#1 ------------------------------------------------------------
consensus_6563#2 ------------------------------------------------------------
consensus_6563#0 GCCACTGTACTTTGAGCGAC 678
consensus_6563#3 --------------------
consensus_6563#1 --------------------
consensus_6563#2 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||