These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [CGGCTACCCGGTGGTCGTTTCGAAGGAGAATCAATACTTGGTTGGCTTCGTGCTGCGAAGGGATCTAAATCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGTCGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGCTGAAGAAAATCCTTGACATGGCCCCGATCACCGTAACGGACCAGACGCCGATGGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAATGGGCGATTGCTCGGTGTAATAACCAAAAAGGACGTCCTGAGGCACGTGAAACAGATGGACAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATAATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCATCTCCTCCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGATTGCCATCCAGGTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGAGAAGCTCCCTCTTCCTCCCTATCCCCAAAACGTGCTAGAATTCCGTGGCTATCGTTATCTGTTGGCACTAGAAAGATATGATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAG] [+] EMBL BX625175 [CGGCTACCCGGTGGTCGTTTCGAAGGAGAATCAATACTTGGTTGGCTTCGTGCTGCGAAGGGATCTAAATCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGTCGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGCTGAAGAAAATCCTTGACATGGCCCCGATCACCGTAACGGACCAGACGCCGATGGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAATGGGCGATTGCTCGGTGTAATAACCAAAAAGGACGTCCTGAGGCACGTGAAACAGATGGACAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATAATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCATCTCCTCCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGATTGCCATCCAGGTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGAGAAGCTCCCTCTTCCTCCCTATCCCCAAAACGTGCTAGAATTCCGTGGCTATCGTTATCTGTTGGCACTAGAAAGATATGATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAG] [+] EMBL BM582944 [ ccgTAAACCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGTCGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGCTGAAGAAAATCCTCGACATGGCCCCGATCACCGTAACGGACCAGACGCCGATGGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAATGGGCGATTGCTCGGTGTAATAACCAAAAAGGACGTCCTGAGGCACGTGAAACAGATGGACAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATAATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCATCTCCCTCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGAATGCCATCCAGGTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGACAAGCTCCCTCTCCCTCTCTATCCCCAAAACGTGCTAGAATTCCGTGGCTACCGTTATCTATTGGCACTAGAAAGATATGATAGC ] consensusID : consensus_6564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence [ATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAGCAGATGGAGAAAAACATACACACACTAAAAACAGTGCAATAATATACAAGCCGGTCTTTTTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTATGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTT-GTATTATTCAGGCAAAATGATTCA-TTCTGTTCCG-TTGTGATCAAAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATAGATAAATATCATGTTAGTAAAAAAAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCTCCTACATTCTCTCGTCCAGGACTTATGACAAAACAGTTATCATATATTTTTTACACAACCACACACACACCCAAACAAACACTCAAAACTGTGCAATCTAATCGAACCGATTGTGTAGCGTTGCTGGTAACCGTTCGTATGTATGTATGAAAGGAAGCAAAAACACGAGTAGACAAATTACATTTTGGCAAAGCAAGCATGAA] [+] EMBL BX618886 [ATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAGCAGATGGAGAAAAACATACACACACTAAAAACAGTGCAATAATATACAAGCCGGTCTTTTTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTATGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTT GTATTATTCAGGCAAAATGATTCA TTCTGTTCCG TTGTGATCAAAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATAGATAAATATCATGTTAGTAAAAAAAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCTCCTACATTCTCTCGTCCAGGACTTATGACAAAACAGTTATCATATATTTTTTACACAACCACACACACACCCAAACAAACACTCAAAACTGTGCAATCTAATCGAACCGATTGTGTAGCGTTGCTGGTAACCGTTCGTATGTATGTATGAAAGGAAGCAAAAACACGAGTAGACAAATTACATTTTGGCAAAGCAAGCATGAA] [+] EMBL BX615534 [ aaGGTATTAGAAGAACCCTGTGTTACGTTGTGCTAGCATTTTTGGAAGTAAC AAAAAAAGTATCAATAATTTGGAATTATTCAGGGAAAATGATTCATTTTTGTTCTGTTTGTGATCAAAAAAAGCAAGAGAAGCAGGAGTTGATAGACA ] consensusID : consensus_6564#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [CGAGGCAAGAACTNCCGGCACTGATGGAATATACAAGCCGGTCTTTCTCTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTGTGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAATGATTCATTCTGTTCCGTTGTGATCAAGAGAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATACGATAAGACTATCATGTTGAGTAAAGANAANAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGCGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCGTCCTACATTCTCGTCGTCCAGGACTTATGACAAAAC] [+] EMBL BX468299 [CGAGGCAAGAACTNCCGGCACTGATGGAATATACAAGCCGGTCTTTCTCTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTGTGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAATGATTCATTCTGTTCCGTTGTGATCAAGAGAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATACGATAAGACTATCATGTTGAGTAAAGANAANAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGCGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCGTCCTACATTCTCGTCGTCCAGGACTTATGACAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6564#1 ---ATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAGCAGATGGAGAAAAACATACACAC 57 consensus_6564#2 --------------------------------------------------CGAGGCAAGA 10 consensus_6564#0 CGGCTACCCGGTGGTCGTTTCGAAGGAGAATCAATACTTGGTTGGCTTCGTGCTGCGAAG 60 * consensus_6564#1 A---CTAAAAACAGTGCAATAATATACAAGCCG-GTCTTTTT--TGATTATTTTTTTGTA 111 consensus_6564#2 A---CTNCCGGCACTGATGGAATATACAAGCCG-GTCTTTCTCTTGATTATTTTTTTGTA 66 consensus_6564#0 GGATCTAAATCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGT- 119 ** * ** * * ** ** ** ** * * ** consensus_6564#1 TGGTGGGAGTTTAAATCCTG--CCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAA 169 consensus_6564#2 TGGTGGGAGTTTAAATCCTG--CCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAA 124 consensus_6564#0 CGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGC 179 * *** * * * * * * **** ** * *** ** * * ** consensus_6564#1 TAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTAT 229 consensus_6564#2 TAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTGT 184 consensus_6564#0 TGAAGAAAATCCTTGACATGGCCCCGATCACCGTA----ACGGACCAGACGCCG----AT 231 * * * ** ** ** * *** * * *** * * consensus_6564#1 GCTAGCATTTTTGGAAGTAA-CAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAA 288 consensus_6564#2 GCTAGCATTTTTGGAAGTAA-CAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAA 243 consensus_6564#0 GGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAA 291 * * * * * ** * * ** * * * * *** ** ** consensus_6564#1 TGATTCATTCTGTTCCGTTGTGATCAA---AAAAAGCAAGAGAAGCAGCAGTTGATAGAC 345 consensus_6564#2 TGATTCATTCTGTTCCGTTGTGATCAAGAGAAAAAGCAAGAGAAGCAGCAGTTGATAGAC 303 consensus_6564#0 TGGGCGATTGCTCGGTGTAATAACCAA-----AAAGGACGTCCTGAGGCACGTGAAACAG 346 ** *** ** * * *** **** * * * *** *** * * consensus_6564#1 ACGCTTCAGCGTATA-GATAAA--TATCATGTT-AGTAAA-----AAAAAACAATTAGGA 396 consensus_6564#2 ACGCTTCAGCGTATACGATAAGACTATCATGTTGAGTAAAGAN--AANAAACAATTAGGA 361 consensus_6564#0 ATGGA-CAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATA 405 * * ** * * * ** * * **** * ** ** * * *** * consensus_6564#1 GAGAAATATCA-AGAGGCGTACCCGGGG-GGGCGCCTTG-----TGTACGTAAACGGGGG 449 consensus_6564#2 GAGAAATATCA-AGAGGCGTACCCGGGGCGGGCGCCTTG-----TGTACGTAAACGGGGG 415 consensus_6564#0 ATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCA 465 ** *** *** * * * ** ** ** * * * * * consensus_6564#1 TAAACAGTTTTACTC-TCCT---ACATTCTC-TCGTCCAGGACTTATGA---CAAAACAG 501 consensus_6564#2 TAAACAGTTTTACTCGTCCT---ACATTCTCGTCGTCCAGGACTTATGA---CAAAAC-- 467 consensus_6564#0 TCTCCTCCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGATTGCCATCCAG 525 * * ** * * ** ** *** ***** * ** * * * consensus_6564#1 TTA-TCATATATTTTTTACACAACCACACACACACCCAAACAAACACTCAAAACTGTGCA 560 consensus_6564#2 ------------------------------------------------------------ consensus_6564#0 GTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGAGAAGCTCCC 585 consensus_6564#1 ATCTAATCGAACCGATTGTGTAGCGTTGCTGGTAACCGTTCGTATGTATGTATGAAAGGA 620 consensus_6564#2 ------------------------------------------------------------ consensus_6564#0 TCTTCCTCCCTATCCCCAAAACGTGCTAGAATTCCGTGGCTATCGTTATCTGTTGGCACT 645 consensus_6564#1 AGCAAAAACACGAGTAGACAAATTACATTTTGGCAAAGCAAGCATGAA 668 consensus_6564#2 ------------------------------------------------ consensus_6564#0 AGAAAGATATGATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAG--- 690 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||