cluster # 6567

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Anopheles gambiae
cluster # 6567 cluster # 6567 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6567#0 length = 650 sequences # 3

consensus_6567#1 length = 611 sequences # 1
consensus_6567#2 length = 580 sequences # 1

consensusID : consensus_6567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 650
fasta sequence

                              [CCGATAAGAAGTGAAAGTAACTTCCACGATCGAACTATACGCACCGTTCAAACCGGTTTTATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGCCTGTACGTGACGTACTTCGGGGGCCATCCCGAGTCGGGCCTGGAGCCGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTCGGCGTGAAGGAGGAA]

[+] EMBL BM606434             [CCGATAAGAAGTGAAAGTAACTTCCACGATCGAACTATACGCACCGTTCAAACCGGTTTTATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGCCTGTACGTGACGTACTTCGGGGGCCATCCCGAGTCGGGCCTGGAGCCGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTCGGCGTGAAGGAGGAA]
[+] EMBL BM611102             [          GTGAAAGTAACTTCCACGATCGAACTACACGCACCGTTCAAACCGGTTTTATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCA                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM599234             [                                                           TATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCC                                                                                                          ]




>consensus_6567#0
CCGATAAGAAGTGAAAGTAACTTCCACGATCGAACTATACGCACCGTTCAAACCGGTTTT
ATAGGTTAAAAAGGCACCGCTGTTGATCGATTTTCTTTTCTCCCCATTACTCTTGCAGCA
TTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCT
CCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACT
CGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACC
AGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGC
GCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACG
TCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCG
ACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGC
TGCCGAAGGAGCGCCTGTACGTGACGTACTTCGGGGGCCATCCCGAGTCGGGCCTGGAGC
CGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTCGGCGTGAAGGAGGAA

consensusID : consensus_6567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAATTTAAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCTCTTTGCGGCACCGCATTTTGCATACACACACACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGTCTGTACGTGACGTACTTCGGGGGCCATCCTGAGTCGGGACTGGAGCCGGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTGGG]

[+] EMBL BM594736             [CCGCCCACGCGTCCGCCCACGCGTCCGGTAAATTTAAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCTCTTTGCGGCACCGCATTTTGCATACACACACACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGTCTGTACGTGACGTACTTCGGGGGCCATCCTGAGTCGGGACTGGAGCCGGGATCTGGAGTGTCGCGAGATTTGGCTGAAGCTGGG]




>consensus_6567#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTAAATTTAAAGGTGCCCGAAAGTACTGCATTG
GTAGTTTTGCTTCCTCGTCTCTTTGCGGCACCGCATTTTGCATACACACACACCCTCTGT
GCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACT
TCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATC
CGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGG
TCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCC
GTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGT
TCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGT
GGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGTCTGTACGTGACGT
ACTTCGGGGGCCATCCTGAGTCGGGACTGGAGCCGGGATCTGGAGTGTCGCGAGATTTGG
CTGAAGCTGGG

consensusID : consensus_6567#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [CCGCGGAAAATAAAACGTGGATAAAGAGGCCGATCTTACGGCAAGGAAAGGCTTATCTCTCAGTTCGCATTGCGTAGGGTGCAGATTTTAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCCCTTTGCGGCACCGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGC]

[+] EMBL BM648838             [CCGCGGAAAATAAAACGTGGATAAAGAGGCCGATCTTACGGCAAGGAAAGGCTTATCTCTCAGTTCGCATTGCGTAGGGTGCAGATTTTAAGGTGCCCGAAAGTACTGCATTGGTAGTTTTGCTTCCTCGTCCCTTTGCGGCACCGCATTTTGCATATACACACAAACCCTCTGTGCCTATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGC]




>consensus_6567#2
CCGCGGAAAATAAAACGTGGATAAAGAGGCCGATCTTACGGCAAGGAAAGGCTTATCTCT
CAGTTCGCATTGCGTAGGGTGCAGATTTTAAGGTGCCCGAAAGTACTGCATTGGTAGTTT
TGCTTCCTCGTCCCTTTGCGGCACCGCATTTTGCATATACACACAAACCCTCTGTGCCTA
TCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCTTC
AAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGACG
CTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCGAC
CCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTGCC
GGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCTTC
GAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGGCG
TGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6567#1      ------------------------------------------------CCGCCCACGCGT 12
consensus_6567#2      CCGCGGAAAATAAAACGTGGATAAAGAGGCCGATCTTACGGCAAGGAAAGGCTTATCTCT 60
consensus_6567#0      -----------------------------CCGATAAGAAGTGAAAGTAACTTCCACGATC 31
                                                                            *     

consensus_6567#1      CCGCC-CAC---GCGTCCGGT--AAATTTAAAGGTGCCCGAAAGTACTGC-ATTGGTAGT 65
consensus_6567#2      CAGTT-CGCATTGCGTAGGGTGCAGATTTTAAGGTGCCCGAAAGTACTGC-ATTGGTAGT 118
consensus_6567#0      GAACTATACGCACCGTTCAAACCGGTTTTATAGGT-TAAAAAGGCACCGCTGTTGATCGA 90
                              *    ***          ***  ****     ** * ** **  *** * * 

consensus_6567#1      TTTGCTTCCTCGTCTCTTTGCGGCACCGCATTTTGCATACACACACA--CCCTCTGTGCC 123
consensus_6567#2      TTTGCTTCCTCGTCCCTTTGCGGCACCGCATTTTGCATATACACACAAACCCTCTGTGCC 178
consensus_6567#0      TTTTCTTTTCTCCCCATTACTCTTGCAGCATTTTGCATATACACACAAACCCTCTGTGCC 150
                      *** ***      *  **       * ************ *******  ***********

consensus_6567#1      TATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCT 183
consensus_6567#2      TATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCT 238
consensus_6567#0      TATCAACCATGGACACCTCGCTGACCGCCTCCCAGATCCGGAGCATCTTTCTCGACTTCT 210
                      ************************************************************

consensus_6567#1      TCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGA 243
consensus_6567#2      TCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGA 298
consensus_6567#0      TCAAGGAGAAGGAGCATCTGTACGTGCACTCGTCGTCGGTGATCCCGCTGGACGATCCGA 270
                      ************************************************************

consensus_6567#1      CGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCG 303
consensus_6567#2      CGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCG 358
consensus_6567#0      CGCTGCTGTTCGCCAATGCGGGCATGAACCAGTTCAAGCCGATCTTTCTCGGCACGGTCG 330
                      ************************************************************

consensus_6567#1      ACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTG 363
consensus_6567#2      ACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTG 418
consensus_6567#0      ACCCGAACAGCGACATGGCGAAGTGGGTGCGCACGGCCAACACGCAGAAGTGCATCCGTG 390
                      ************************************************************

consensus_6567#1      CCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCT 423
consensus_6567#2      CCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCT 478
consensus_6567#0      CCGGCGGCAAGCACAACGATCTGGACGACGTCGGCAAGGATGTGTACCATCACACGTTCT 450
                      ************************************************************

consensus_6567#1      TCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGG 483
consensus_6567#2      TCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGG 538
consensus_6567#0      TCGAGATGCTGGGCAACTGGTCGTTTGGCGACTACTTCAAGAAGGAGATCTGTACGTGGG 510
                      ************************************************************

consensus_6567#1      CGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGTCTGTACGTGACGTACT 543
consensus_6567#2      CGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGC------------------ 580
consensus_6567#0      CGTGGGAGCTGCTGACCGAGCGGCTGAAGCTGCCGAAGGAGCGCCTGTACGTGACGTACT 570
                      ******************************************                  

consensus_6567#1      TCGGGGGCCATCCTGAGTCGGGACTGGAGCCGGGATCTGGAGTGTCGCGAGATTTGGCTG 603
consensus_6567#2      ------------------------------------------------------------
consensus_6567#0      TCGGGGGCCATCCCGAGTCGGGCCTGGAGCCGG-ATCTGGAGTGTCGCGAGATTTGGCTG 629
                                                                                  

consensus_6567#1      AAGCTGGG------------- 611
consensus_6567#2      ---------------------
consensus_6567#0      AAGCTCGGCGTGAAGGAGGAA 650