cluster # 6570

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6570 cluster # 6570 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6570#0 length = 1246 sequences # 4

consensus_6570#1 length = 341 sequences # 1

consensusID : consensus_6570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1246
fasta sequence

                              [ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGAGGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATTGTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACACACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACGTGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAGGCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAAAAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACT-------GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAA-CAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAGGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA]

[+] EMBL BX608733             [ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGAGGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATTGTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACACACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACGTGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAGGCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAAAAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACT       GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM594742             [                                                                                                                                                                                                                                                                                                                                                                                                                            ccGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGAATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGGGGGTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGTTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAA                                                                                                                                                                                                                                        ]
[+] EMBL BM651219             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgAAGAAACGGAGCGCACATGACGACT       GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX610108             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGACT       GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAA TAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAGGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA]




>consensus_6570#0
ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGA
GGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATT
GTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACAC
ACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACG
TGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAG
GCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAA
AAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGA
GATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGT
ATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAAT
AGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGT
GCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAG
CGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGA
AAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATAC
AAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA
ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACAAGAAATATGC
GAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATAT
ACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTC
CTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAAC
ATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAG
GATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAA
CACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA

consensusID : consensus_6570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA]

[+] EMBL BM637862             [CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA]




>consensus_6570#1
CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAA
AACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATAT
GCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACAT
ATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACAT
TCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACA
ACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6570#0      ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGA 60
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATT 120
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACAC 180
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      ACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACG 240
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      TGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAG 300
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAA 360
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      AAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGA 420
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGT 480
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      ATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAAT 540
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      AGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGT 600
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAG 660
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      CGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGA 720
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      AAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATAC 780
consensus_6570#1      ----------------------------------------------------------CC 2
                                                                                 *

consensus_6570#0      AAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA 840
consensus_6570#1      GCCCACGCGTCCG-ACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA 61
                         *** * * *  **********************************************

consensus_6570#0      ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAAC-AAGAAATATG 899
consensus_6570#1      ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATG 121
                      ************************************************* **********

consensus_6570#0      CGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATA 959
consensus_6570#1      CGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATA 181
                      ************************************************************

consensus_6570#0      TACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATT 1019
consensus_6570#1      TACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATT 241
                      ************************************************************

consensus_6570#0      CCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAA 1079
consensus_6570#1      CCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAA 301
                      ************************************************************

consensus_6570#0      CATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGA 1139
consensus_6570#1      CATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA-------------------- 341
                      ****************************************                    

consensus_6570#0      GGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGA 1199
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      ACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA 1246
consensus_6570#1      -----------------------------------------------