cluster # 658

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Anopheles gambiae
cluster # 658 cluster # 658 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_658#0 length = 657 sequences # 1

consensus_658#1 length = 158 sequences # 1

consensusID : consensus_658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGTGCCAACGGCGTTTCACCGATACTCTCAAAACAGAAGTCCTTCAGCTGTGGCAAGCACCGCTTGGTCGTTGTGTTCCCTCATACGAAGCGATCGAAAATTATCCTTCCGTGATTTTGGGTGGTGCAGGAAAAGTGAAAGTTTCGCCGTTTAATTTTCATTACGTTTTGTGCTGCTTCTCTTCCAATTCCACCATCACGTCTAACCTGACGTTTTTTGTGTGGATTGGACACGACTTTGCTAGATTTAATGTGAATTTTACATTACCTACCCGATGCCTGTCGTGTGATGTGTGAGTTTGTGTGTGTGATCCGCATTAAAGCTGAATGAATCTTTCGTGCCTTACTGTTGGTTGATAATGTCACCAAGGAGCAATTTGTAGCAGAACCCACAAATTGCAAACATATGTCCGGTTTTCTGAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGTGTGTGAATGTGCGAAGCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAATAAAGTGTCTTAAATAACACTAGGGAAAACTCATCACCGTTGCGATAGTACGATAACAAATTGCAACCATTGATAATCGCGTGCAGCGGTGTAAGGCTGGTGCGAAGAAGAAAAGAATCAACTTCTTCAAGT]

[+] EMBL BM628995             [CCGTGCCAACGGCGTTTCACCGATACTCTCAAAACAGAAGTCCTTCAGCTGTGGCAAGCACCGCTTGGTCGTTGTGTTCCCTCATACGAAGCGATCGAAAATTATCCTTCCGTGATTTTGGGTGGTGCAGGAAAAGTGAAAGTTTCGCCGTTTAATTTTCATTACGTTTTGTGCTGCTTCTCTTCCAATTCCACCATCACGTCTAACCTGACGTTTTTTGTGTGGATTGGACACGACTTTGCTAGATTTAATGTGAATTTTACATTACCTACCCGATGCCTGTCGTGTGATGTGTGAGTTTGTGTGTGTGATCCGCATTAAAGCTGAATGAATCTTTCGTGCCTTACTGTTGGTTGATAATGTCACCAAGGAGCAATTTGTAGCAGAACCCACAAATTGCAAACATATGTCCGGTTTTCTGAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGTGTGTGAATGTGCGAAGCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAATAAAGTGTCTTAAATAACACTAGGGAAAACTCATCACCGTTGCGATAGTACGATAACAAATTGCAACCATTGATAATCGCGTGCAGCGGTGTAAGGCTGGTGCGAAGAAGAAAAGAATCAACTTCTTCAAGT]




>consensus_658#0
CCGTGCCAACGGCGTTTCACCGATACTCTCAAAACAGAAGTCCTTCAGCTGTGGCAAGCA
CCGCTTGGTCGTTGTGTTCCCTCATACGAAGCGATCGAAAATTATCCTTCCGTGATTTTG
GGTGGTGCAGGAAAAGTGAAAGTTTCGCCGTTTAATTTTCATTACGTTTTGTGCTGCTTC
TCTTCCAATTCCACCATCACGTCTAACCTGACGTTTTTTGTGTGGATTGGACACGACTTT
GCTAGATTTAATGTGAATTTTACATTACCTACCCGATGCCTGTCGTGTGATGTGTGAGTT
TGTGTGTGTGATCCGCATTAAAGCTGAATGAATCTTTCGTGCCTTACTGTTGGTTGATAA
TGTCACCAAGGAGCAATTTGTAGCAGAACCCACAAATTGCAAACATATGTCCGGTTTTCT
GAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGTGTGTGAATGTGCGAA
GCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAATAAAGTGTCTTAAAT
AACACTAGGGAAAACTCATCACCGTTGCGATAGTACGATAACAAATTGCAACCATTGATA
ATCGCGTGCAGCGGTGTAAGGCTGGTGCGAAGAAGAAAAGAATCAACTTCTTCAAGT

consensusID : consensus_658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [CCGCCCACGCGTCCGGAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGTGTGTGAATGTGCGAAGCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAATAAAGTGTCTTAAATAACACTAGGGAAAACTCATCACC]

[+] EMBL BM620259             [CCGCCCACGCGTCCGGAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGTGTGTGAATGTGCGAAGCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAATAAAGTGTCTTAAATAACACTAGGGAAAACTCATCACC]




>consensus_658#1
CCGCCCACGCGTCCGGAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGT
GTGTGAATGTGCGAAGCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAA
TAAAGTGTCTTAAATAACACTAGGGAAAACTCATCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_658#0      CCGTGCCAACGGCGTTTCACCGATACTCTCAAAACAGAAGTCCTTCAGCTGTGGCAAGCA 60
consensus_658#1      ------------------------------------------------------------
                                                                                 

consensus_658#0      CCGCTTGGTCGTTGTGTTCCCTCATACGAAGCGATCGAAAATTATCCTTCCGTGATTTTG 120
consensus_658#1      ------------------------------------------------------------
                                                                                 

consensus_658#0      GGTGGTGCAGGAAAAGTGAAAGTTTCGCCGTTTAATTTTCATTACGTTTTGTGCTGCTTC 180
consensus_658#1      ------------------------------------------------------------
                                                                                 

consensus_658#0      TCTTCCAATTCCACCATCACGTCTAACCTGACGTTTTTTGTGTGGATTGGACACGACTTT 240
consensus_658#1      ------------------------------------------------------------
                                                                                 

consensus_658#0      GCTAGATTTAATGTGAATTTTACATTACCTACCCGATGCCTGTCGTGTGATGTGTGAGTT 300
consensus_658#1      ------------------------------------------------------------
                                                                                 

consensus_658#0      TGTGTGTGTGATCCGCATTAAAGCTGAATGAATCTTTCGTGCCTTACTGTTGGTTGATAA 360
consensus_658#1      ------------------------------------------------------------
                                                                                 

consensus_658#0      TGTCACCAAGGAGCAATTTGTAGCAGAACCCACAAATTGCAAACATATGTCCG-GTTTTC 419
consensus_658#1      ----------------------------------------------CCGCCCACGCGTCC 14
                                                                     * **  *  * *

consensus_658#0      TGAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGTGTGTGAATGTGCGA 479
consensus_658#1      GGAGTTGTGCAACGATTAATTATTGCTGGAGCCTAGAATTGCTTGTGTGTGAATGTGCGA 74
                      ***********************************************************

consensus_658#0      AGCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAATAAAGTGTCTTAAA 539
consensus_658#1      AGCGCTTCTGGTGCTAGTAAAAACGCAAAGTTTGTCCGCTTCGCAATAAAGTGTCTTAAA 134
                     ************************************************************

consensus_658#0      TAACACTAGGGAAAACTCATCACCGTTGCGATAGTACGATAACAAATTGCAACCATTGAT 599
consensus_658#1      TAACACTAGGGAAAACTCATCACC------------------------------------ 158
                     ************************                                    

consensus_658#0      AATCGCGTGCAGCGGTGTAAGGCTGGTGCGAAGAAGAAAAGAATCAACTTCTTCAAGT 657
consensus_658#1      ----------------------------------------------------------