|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1298 fasta sequence
[CCGCTCATAACGGCTCGACCGTTTCATAACTAACCGACAAACCTTCCGGGGGTTTCCCACATTGTATCTGGCTTATTCTTTGTTTGATACCATATCAGATTTAAACTAGAGGGATGGAAGTCGTTTTTGATGACTGAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACTCCTTGAGAGGGAGTACAATTGACATGGTTAAAAGTTGGCGTTATCATTCCCGGAGTATGACACGCAACATCCTCATGTTTGCCATTTTTTGCGGTCCATGTTTTGCTTCCCGTTGTTATTGTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAG--AAAAAAAAAGCCGTGCTATACATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAACATGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCGATAGATGGCGAATGGAAATT----AAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGCATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCTTTTTCACACTAGAATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGATTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACACGCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGGAATTCG-AAAAAAAAACGGAAAAGCAATTCTACACACAACCTTTATCACTTGGTGATGA]
[+] EMBL BM618406 [CCGCTCATAACGGCTCGACCGTTTCATAACTAACCGACAAACCTTCCGGGGGTTTCCCACATTGTATCTGGCTTATTCTTTGTTTGATACCATATCAGATTTAAACTAGAGGGATGGAAGTCGTTTTTGATGACTGAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACTCCTTGAGAGGGAGTACAATTGACATGGTTAAAAGTTGGCGTTATCATTCCCGGAGTATGACACGCAACATCCTCATGTTTGCCATTTTTTGCGGTCCATGTTTTGCTTCCCGTTGTTATTGTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAG AAAAAAAAAGCCGTGCTATACATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAACATGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCGATAGATGGCGAATGGAAATT AAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGA ]
[+] EMBL BX621461 [ TGTTATTGTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAGAAAAAAAAAAAGCCGTGCTATACATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAACAAGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCGATAGATGGCGAATGGAAATTAAAAAAAAAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAGGTGCATTCACTATC GTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCTTTTTCACACTAGAATGTATGGACTGCTTAGTGGAAGGAG TTTTTTTACTAGACCGTATTTGATATCGGTGAAAATTAACCGAATTAGACAAAGTGCTTGCANGAAAANGCATGTTTTAATACGAACCGCCCT ]
[+] EMBL BX617491 [ TGCTAAGTGCATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCTTTTTCACACTAGAATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGATTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACACGCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGGAATTCG AAAAAAAAACGGAAAAGCAATTCTACACACAACCTTTATCACTTG ]
[+] EMBL BX611473 [ ATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGATTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACACGCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGG ATTCGAAAAAAAAAACGGAAAAGCAATTCTACACAC ACCTTTATCACTTGGTGATGA]
consensusID : consensus_6591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCCTTTTTTCACACTAGAATGTATCGACTGTTTAGTGGAAGCAGTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGCTTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGGAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGT]
[+] EMBL BM644043 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCCTTTTTTCACACTAGAATGTATCGACTGTTTAGTGGAAGCAGTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGCTTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGGAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6591#0 CCGCTCATAACGGCTCGACCGTTTCATAACTAACCGACAAACCTTCCGGGGGTTTCCCAC 60
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 ATTGTATCTGGCTTATTCTTTGTTTGATACCATATCAGATTTAAACTAGAGGGATGGAAG 120
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 TCGTTTTTGATGACTGAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACT 180
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 CCTTGAGAGGGAGTACAATTGACATGGTTAAAAGTTGGCGTTATCATTCCCGGAGTATGA 240
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 CACGCAACATCCTCATGTTTGCCATTTTTTGCGGTCCATGTTTTGCTTCCCGTTGTTATT 300
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 GTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAGAAAAAAAAAGCCGTGCTATAC 360
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 ATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAA 420
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 CATGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCG 480
consensus_6591#1 -----------------------------------------CCGCCCACGCGTCCGCCCA 19
** **** ** ***
consensus_6591#0 ATAGAT--GGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCT 538
consensus_6591#1 CGCGTCCGGGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCT 79
* ****************************************************
consensus_6591#0 AAGTGCATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGG 598
consensus_6591#1 AAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGG 139
***** ******************************************************
consensus_6591#0 GTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGA 658
consensus_6591#1 GTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGA 199
************************************************************
consensus_6591#0 CTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAA 718
consensus_6591#1 CTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAA 259
************************************************************
consensus_6591#0 ACCC--TTTTTCACACTAGAATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAG 776
consensus_6591#1 ACCCCTTTTTTCACACTAGAATGTATCGACTGTTTAGTGGAAGCAGTTTTTT--TACTAG 317
**** ************************** ********** ******** ******
consensus_6591#0 ACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCA 836
consensus_6591#1 ACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGCTTGCAGGAAAAGGCA 377
******************************************** ***************
consensus_6591#0 TGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGT 896
consensus_6591#1 TGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGT 437
************************************************************
consensus_6591#0 AACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTT 956
consensus_6591#1 AACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTT 497
************************************************************
consensus_6591#0 ATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACT 1016
consensus_6591#1 ATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGGAATTTCCATGATCGCCACT 557
**************************************** *******************
consensus_6591#0 AAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGC 1076
consensus_6591#1 AAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGC 617
************************************************************
consensus_6591#0 CGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGA 1136
consensus_6591#1 CGGT-------------------------------------------------------- 621
****
consensus_6591#0 TTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACAC 1196
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 GCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGGAATTCGAAAAAAAAAC 1256
consensus_6591#1 ------------------------------------------------------------
consensus_6591#0 GGAAAAGCAATTCTACACACAACCTTTATCACTTGGTGATGA 1298
consensus_6591#1 ------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||