cluster # 6596

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Anopheles gambiae
cluster # 6596 cluster # 6596 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6596#0 length = 934 sequences # 4

consensus_6596#1 length = 796 sequences # 1

consensusID : consensus_6596#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 934
fasta sequence

                              [TTTAAGCGCGGTGCGGACCATCTGGAGGAGATAGTGGAAATTTTGAACGCAACCTACTACCAAACCATTTGCAGAGAGGCTTGGTACGAGCTGGGACTGACCTACTCCAACATGCTGAACGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTTAAAAAGTTCATCGAATCGTACAAAATCGAGCTGGACACGCTGGAGCTGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGCCGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAGGCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTAATCCTAGTCGCTAGTGCTTCAGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTCGTTCGAAAAGAAGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAGTAAAGAGGTGGTGCACGATGCGTGATATACGCTTAAATTGTAGACTTGTTTAGGAACAAGGGATAGAACGAGAACCATGCCCATATAGAAACCAGCTCGCAATCCAAATTGCTTTGACACTGGGAACCATTTAAGCTGCAATCACATTCAAAAAAAGCTGTACCAATCCGCTCCGTTCTGTTCGCGTAAATATACACATTGACGCAATGCAAACATTCGC]

[+] EMBL BX614146             [TTTAAGCGCGGTGCGGACCATCTGGAGGAGATAGTGGAAATTTTGAACGCAACCTACTACCAAACCATTTGCAGAGAGGCTTGGTACGAGCTGGGACTGACCTACTCCAACATGCTGAACGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTTAAAAAGTTCATCGAATCGTACAAAATCGAGCTGGACATGCTGG GCTGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGCCGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAGGCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACC                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX610001             [          ggGCGGACCAGCTGGAGGAGAAAGTGGAAATTTTGAACGCAACCTACTACCAAACCATTTGCAGAGAGGCTGGGAACGAGCTGGGACTGACCTACTCCAACATGCGGAACGTGAAGCTCCCCCAGCTCGACGAAAGGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTAAAAAAGTCCATCGAATCGTACAAAATCGAGCTGGACACGCTGGAGCCGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACGGGACGCGggctgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX608464             [                                                                                              GACTGACCTTCTCCAACATGCTGAACGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTTAAAAAGTTCATCGAATCGTACAAAATCGAGCTGGACACGCTGGAGCTGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGCCGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAGGCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTAATCCTAGTCGCTAGTGCTTCAGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTCGTTCGAAAAGAAGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAGTAAAGAGGTGGTGCACGATGCGTGATATACGCTTAAATTGTAGACTTGTTTAGGAACAAGGGATAGAACGAGAACCATGCCCATATAGAAACCAGCTCGCAATCCAAATTGCTTTGACACTGGGAACCATTTAAGCTGCAATCACATTCAAAAAAAGCTGTACCAATCCGCTCCGTTCTGTTCGCGTAAATATACACATTGACGCAATGCAAA       ]
[+] EMBL BX615963             [                                                                                                                                                                                                                                                                                                                                                                       CAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGTAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCGGAAGGCTGGATGTATGTGGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTAATCCTAGTCGCTAGTGCTTCGGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTCGTTCGAAAGGAGGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAGTAAAGAGGTGGTGCACGATGCGTGATATACGCTTGAATTGTAGACTTGTTTAGGAACAAGGGATAGAACGAGAACCATGCCCATATGGAAACCAGCTCGCAATCCAAATTGCTTTGACACTGGGAACCATTTGGGCTGCAATCACATTCAAGAAAAGCTGTACCAATCCGCTCCGTTCTGTTCGCGTAAATATACACATTGACGCAATGCAAACATTCGC]




>consensus_6596#0
TTTAAGCGCGGTGCGGACCATCTGGAGGAGATAGTGGAAATTTTGAACGCAACCTACTAC
CAAACCATTTGCAGAGAGGCTTGGTACGAGCTGGGACTGACCTACTCCAACATGCTGAAC
GTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTC
AACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTTAAAAAGTTCATCGAATCG
TACAAAATCGAGCTGGACACGCTGGAGCTGCCGGAAACGATTGACGCGGACGAGATGCAA
CCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGCCGGAC
AAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAG
TGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGGAG
ATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAGGCTAG
ATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTAATCCT
AGTCGCTAGTGCTTCAGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTCGTTCGA
AAAGAAGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAGTAAAGA
GGTGGTGCACGATGCGTGATATACGCTTAAATTGTAGACTTGTTTAGGAACAAGGGATAG
AACGAGAACCATGCCCATATAGAAACCAGCTCGCAATCCAAATTGCTTTGACACTGGGAA
CCATTTAAGCTGCAATCACATTCAAAAAAAGCTGTACCAATCCGCTCCGTTCTGTTCGCG
TAAATATACACATTGACGCAATGCAAACATTCGC

consensusID : consensus_6596#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence

                              [CAAGAATNCCCGAGGTTACACGAAGGAAACGGAAGCGTCACAGTACGCGAAGATTCTGGAGGATATTGCGTCGCTGTACAAGCATTTGGCGTTCTTCGAGGAGGATGATGGGATCAGTGCAAGCTGTTTAAGCGCGGTGCGGACCAGCTGGAGGAGATAGTGGAAATTTTTGAACTGCAACCTACTACAAACCATATTTGCACGCAGAGCGCTNTGGTACGAGCTGGGACTTGACCTACATCCAAAAATGACTGAACTGTGAAAGCGTACTACCCCAGACGTCGAAGCGGGAAACAATAGGCAANGGCCACAACNNACGTGGACTATCTGTCGCCCCACAACACGGCCCCGCAACCAGGCCGACTCCAAATCAAAAAACACATTCCACAACCCAAACTNGACCNCCCGNCACCGCACCAGCACGCGCCATATACCCGCGCANCAACCCTCACTTCCACACNGNACACGTNTCTCCACTACAGACGAACAAAGANTCCTGCNNTATTCANCACACAACAAACATTCACAGANAANGAACCCACATTGTAGGCAGACCGAACACCNNGAGCCCACTGNNGCTGTGACACAGCCCCCCTTTTGACCNCCCCNGNNCGCCATGANATAATCCAGGCAAATGCATATGNNAAACTCGANCACCGATGGTAANACCCGGCCNACATNNCAAACATTGTGNCTGATCACCACCCGCCCGGGGCACANCCTACCACCCCGNCTNGGCGTTAACCCGTCACCGNGCTAACCACATATATNGANANACACAACCATTNCANGGGCG]

[+] EMBL AL930918             [CAAGAATNCCCGAGGTTACACGAAGGAAACGGAAGCGTCACAGTACGCGAAGATTCTGGAGGATATTGCGTCGCTGTACAAGCATTTGGCGTTCTTCGAGGAGGATGATGGGATCAGTGCAAGCTGTTTAAGCGCGGTGCGGACCAGCTGGAGGAGATAGTGGAAATTTTTGAACTGCAACCTACTACAAACCATATTTGCACGCAGAGCGCTNTGGTACGAGCTGGGACTTGACCTACATCCAAAAATGACTGAACTGTGAAAGCGTACTACCCCAGACGTCGAAGCGGGAAACAATAGGCAANGGCCACAACNNACGTGGACTATCTGTCGCCCCACAACACGGCCCCGCAACCAGGCCGACTCCAAATCAAAAAACACATTCCACAACCCAAACTNGACCNCCCGNCACCGCACCAGCACGCGCCATATACCCGCGCANCAACCCTCACTTCCACACNGNACACGTNTCTCCACTACAGACGAACAAAGANTCCTGCNNTATTCANCACACAACAAACATTCACAGANAANGAACCCACATTGTAGGCAGACCGAACACCNNGAGCCCACTGNNGCTGTGACACAGCCCCCCTTTTGACCNCCCCNGNNCGCCATGANATAATCCAGGCAAATGCATATGNNAAACTCGANCACCGATGGTAANACCCGGCCNACATNNCAAACATTGTGNCTGATCACCACCCGCCCGGGGCACANCCTACCACCCCGNCTNGGCGTTAACCCGTCACCGNGCTAACCACATATATNGANANACACAACCATTNCANGGGCG]




>consensus_6596#1
CAAGAATNCCCGAGGTTACACGAAGGAAACGGAAGCGTCACAGTACGCGAAGATTCTGGA
GGATATTGCGTCGCTGTACAAGCATTTGGCGTTCTTCGAGGAGGATGATGGGATCAGTGC
AAGCTGTTTAAGCGCGGTGCGGACCAGCTGGAGGAGATAGTGGAAATTTTTGAACTGCAA
CCTACTACAAACCATATTTGCACGCAGAGCGCTNTGGTACGAGCTGGGACTTGACCTACA
TCCAAAAATGACTGAACTGTGAAAGCGTACTACCCCAGACGTCGAAGCGGGAAACAATAG
GCAANGGCCACAACNNACGTGGACTATCTGTCGCCCCACAACACGGCCCCGCAACCAGGC
CGACTCCAAATCAAAAAACACATTCCACAACCCAAACTNGACCNCCCGNCACCGCACCAG
CACGCGCCATATACCCGCGCANCAACCCTCACTTCCACACNGNACACGTNTCTCCACTAC
AGACGAACAAAGANTCCTGCNNTATTCANCACACAACAAACATTCACAGANAANGAACCC
ACATTGTAGGCAGACCGAACACCNNGAGCCCACTGNNGCTGTGACACAGCCCCCCTTTTG
ACCNCCCCNGNNCGCCATGANATAATCCAGGCAAATGCATATGNNAAACTCGANCACCGA
TGGTAANACCCGGCCNACATNNCAAACATTGTGNCTGATCACCACCCGCCCGGGGCACAN
CCTACCACCCCGNCTNGGCGTTAACCCGTCACCGNGCTAACCACATATATNGANANACAC
AACCATTNCANGGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6596#0      TTTAAGCGCGGTGCGGACCATCTGGAGGAGATAGTGGAAATTTTGAACGCAACCTACTAC 60
consensus_6596#1      --CAAGAATNCCCGAGGTTACACGAAGGAAACGGAAGCGTCACAGTACGCGAAG-ATTCT 57
                         ***         *   *   * **** *  *  *       * **** *   * *  

consensus_6596#0      CAAACCATTTGCAGAGAGGCTTG-GTACGAGCTGGGACTGACCTACTCCAACATGCTGAA 119
consensus_6596#1      GGAGGATATTGCGTCGCTGTACAAGCATTTGGCGTTCTTCGAGGAGGATGATGGGATCAG 117
                        *     ****   *  *     * *   *  *    *     *     *   * * * 

consensus_6596#0      CGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCT 179
consensus_6596#1      TGC-AAGCTGTTTAAGCGCGGTGCGGACCAGCTGGAGGAGATAGTGGAAATTTTTGAACT 176
                       *  ***** *   *** **  *     ***    ****                *  **

consensus_6596#0      -CAACAAA--ATCAACCATCTGAGCGAGAAGAGCATTC-GGAACTTTAAAAAGTTCATCG 235
consensus_6596#1      GCAACCTACTACAAACCATATTTGCACGCAGAGCGCTNTGGTACGAGCTGGGACTTGACC 236
                       ****  *  *  ****** *  **  * *****  *  ** **          *   * 

consensus_6596#0      AATCGTACAAAATCGAGCTGGACACGCTGGAGCTGCCGGAAACGATTGACGCGGACGAGA 295
consensus_6596#1      TA-CATCCAAAAATGA-CTGAAC-TGTGAAAGCGTACTACCCCAGACGTCG-AAGCGGGA 292
                       * * * *****  ** *** **  *    ***   *     *    * **    ** **

consensus_6596#0      TGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGC 355
consensus_6596#1      AACAATAGGCAANGGCCACAAC---NNACGTGGACTATCTGTCGCCCCACAACACGGCCC 349
                        ***  *  *  *  * *        ** * *     ****    ** ** **   * *

consensus_6596#0      CGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCG 415
consensus_6596#1      CG--CAACCAGGCCGA-CTCCAAATCA--AAAAACACATTCCACAACCCAAACTNGACCN 404
                      **  *** * *    * ** ** * **   ******   *   * **   * *  *  * 

consensus_6596#0      TGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCA 475
consensus_6596#1      CCCGNCACCGC----ACCAGC--ACGCGCCATATACCCGCGCANCAACC-----CTCACT 453
                             * **    ** ***  * *** *   *    *****  * *          * 

consensus_6596#0      AGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAG 535
consensus_6596#1      TCCACACNGNACACGTNTCTCCACTACAGACGAACAAAGANTCCTGCNNTATT-CANCAC 512
                         * *       * *    ** **  **  * * **         *   **  **  * 

consensus_6596#0      GCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTA 595
consensus_6596#1      ACAACAAACATTCACAGANAANGA---------ACCCACATTGTA--GGCAGACCGAACA 561
                       * * * * **  * *** *  **         *  ****** **    *  *****  *

consensus_6596#0      ATCCTAGTC-GCTAGTGCTTCAGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTC 654
consensus_6596#1      CCNNGAGCCCACTGNNGCTGTGA-----CACAGCCCC---CCTTTTGACCNCCCCNGNNC 613
                           ** *  **   ***         ** **         * * * *  * *  *  *

consensus_6596#0      GTTCGAAAAGAAGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAG 714
consensus_6596#1      GCCATGANATAATC---CAGGCAAATGCATATGNNAAACTC--------GANCACCGATG 662
                      *     * * ** *   **  *  *  ***      **  *        **   **   *

consensus_6596#0      TAAAGAGGTGGTGCACGATGCGTGATATACGCTTAAATTGTAGACTTGTTTAGGAACAAG 774
consensus_6596#1      GTAANACCCGGCCNACATNNCAAACATTGTGNCTGA--TCACCACCCGCCC-GGGGCACA 719
                        ** *   **   **    *      *  *  * *  *    **  *    **  **  

consensus_6596#0      GGATAGAACGAGAACCATGCCCATATAGAAACCAGCTCGCAATCCAAATTGCTTTGACAC 834
consensus_6596#1      NCCTACCACCCCGNCTNGGC--GTTAACCCGTCACCGNGCTAACCACAT-ATATNGANAN 776
                         **  **     *   **   *  *     ** *  ** * *** **    * ** * 

consensus_6596#0      TGGGAACCATTTAAGCTGCAATCACATTCAAAAAAAGCTGTACCAATCCGCTCCGTTCTG 894
consensus_6596#1      ACACAACCATTNCANGGGCG---------------------------------------- 796
                          *******  *   **                                         

consensus_6596#0      TTCGCGTAAATATACACATTGACGCAATGCAAACATTCGC 934
consensus_6596#1      ----------------------------------------