cluster # 6597

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Anopheles gambiae
cluster # 6597 cluster # 6597 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6597#0 length = 686 sequences # 3

consensus_6597#1 length = 473 sequences # 1
consensus_6597#2 length = 312 sequences # 1

consensusID : consensus_6597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 686
fasta sequence

                              [CCGCAATCCCACAAGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAAAAAAAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAATGAAACGGGGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAACAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGTGTGAAGCGTTGTAGTAGAGGTACCTACGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAAGAAGGAGATTGGCACGACGAAGGCAATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTTATTTGAATGTGGGAAAAGAAGAAGAAGAAGAAAAAAATGCATCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTCGGTCGCATAAATATAAATGTATGGCATGTG]

[+] EMBL BM627818             [CCGCAATCCCACAAGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAAAAAAAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAATGAAACGGGGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAACAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGTGTGAAGCGTTGTAGTAGAGGTACCTACGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAAGAAGGAGATTGGCACGACGAAGGCAATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTTATTTGAATGTGGGAAAAGAAGAAGAAGAAGAAAAAAATGCATCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTC                              ]
[-] EMBL BX627120             [                          GGCTGAGAAACTTTATT  AAAAAAAAAAGAAANACANCAAACAAACGAAACTATATATACTTATACATAATATTATANGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAATGAAACGGAGAAAGGATGAACACACGCACCTATTGCTTATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM650923             [                                                                                                                                                                                                                                                                                                                                                                                                                  ccgAGGAAATTGGCACGACGAAGGCGATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTTATTTGAATGTGGGCAAAGAAGAAGAAGAAGATAAAAATGCATCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTCGGTCGCATAAATATAAATGTATGGCATGTG]




>consensus_6597#0
CCGCAATCCCACAAGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAAAAAAAAAGAAAA
ACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATT
CAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAATGAAACGGGGAAA
GGATGAACACACGCACCTATTGCTTATTGCAAAACAAAACAAAACAAAACAAAACAAAAA
CTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGC
TTTAATATTAGCCAAAAGCGTGTGAAGCGTTGTAGTAGAGGTACCTACGGTAGGGCTGGT
AATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAAGAAGGAGATTGGCACGA
CGAAGGCAATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATT
TGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTTAT
TTGAATGTGGGAAAAGAAGAAGAAGAAGAAAAAAATGCATCTTTATATCTCATTTCTCAA
CAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTCGGTC
GCATAAATATAAATGTATGGCATGTG

consensusID : consensus_6597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [CGACCCACGCGTCCGGTGATCTAGTTTGGCTGAGAAACTTTATTAAAACAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGCATTGAAACGGAGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGGCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCAT]

[+] EMBL BM585545             [CGACCCACGCGTCCGGTGATCTAGTTTGGCTGAGAAACTTTATTAAAACAAAGAAAAACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGCATTGAAACGGAGAAAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAAACAAAACAAAACAAAAACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAATATTAGCCAAAAGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGGCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCAT]




>consensus_6597#1
CGACCCACGCGTCCGGTGATCTAGTTTGGCTGAGAAACTTTATTAAAACAAAGAAAAACA
ACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATATTCAG
GAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGCATTGAAACGGAGAAAGG
ATGAACACACGCACCTATTGCTTATTGCAAAACAAAAACAAAACAAAACAAAAACTCGTA
AAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAATGCTTTAAT
ATTAGCCAAAAGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTA
CTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGG
CGATCCGGCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCAT

consensusID : consensus_6597#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GACCCACGCGTCCGGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGTCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTGTTTTGAGTTTATTTGAATGTGGGCCAAGAAGGAGGAGAAGAAAAAACGCACCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCCTAGG]

[+] EMBL BM654497             [GACCCACGCGTCCGGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGCAGGCGATCCGTCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTGTTTTGAGTTTATTTGAATGTGGGCCAAGAAGGAGGAGAAGAAAAAACGCACCTTTATATCTCATTTCTCAACAAAACCCCGCGCGCGCCTAGG]




>consensus_6597#2
GACCCACGCGTCCGGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTGGTAAT
TTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCACGACGC
AGGCGATCCGTCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCATTTGA
TATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTGTTTTGAGTTTATTTGAATGTG
GGCCAAGAAGGAGGAGAAGAAAAAACGCACCTTTATATCTCATTTCTCAACAAAACCCCG
CGCGCGCCTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6597#0      -CCGCAATCCCACAAGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAAAAAAAAAGAAA 59
consensus_6597#1      CGACCCACGCGTCCGGTGATCTAGTTTGGCTGAGAAACTTTATTAAAAC----AAAGAAA 56
consensus_6597#2      ------------------------------------------------------------
                                                                                  

consensus_6597#0      AACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATAT 119
consensus_6597#1      AACAACAAACAAACGAAACTATATATACTTATACATAATATTATACGTTAAAATCCATAT 116
consensus_6597#2      ------------------------------------------------------------
                                                                                  

consensus_6597#0      TCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGAAT-GAAACGGGGA 178
consensus_6597#1      TCAGGAAAGGATCGGATCGAGCACGAAGATGGAACAGAAATGCATGCATTGAAACGGAGA 176
consensus_6597#2      ------------------------------------------------------------
                                                                                  

consensus_6597#0      AAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAACAAAACAAAACAAAACAAA 238
consensus_6597#1      AAGGATGAACACACGCACCTATTGCTTATTGCAAAACAAAA----ACAAAACAAAACAAA 232
consensus_6597#2      ------------------------------------------------------------
                                                                                  

consensus_6597#0      AACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAAT 298
consensus_6597#1      AACTCGTAAAGGAAAGGAATGAGAATTGCAGCAAGGGAAGCGGTCGAAACGAAGAGGAAT 292
consensus_6597#2      ------------------------------------------------------------
                                                                                  

consensus_6597#0      GCTTTAATATTAGCCAAAAGCGTGTGAAGCGTTGTAGTAGAGGTACCTACGGTAGGGCTG 358
consensus_6597#1      GCTTTAATATTAGCCAAAAGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTG 352
consensus_6597#2      -----GACCCACGCGTCCGGCGGGTGAAGCGTTGTAGTAGAGGTACCTAAGGTAGGGCTG 55
                            *     **     *** ************************** **********

consensus_6597#0      GTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAAGAAGGAGATTGGCAC 418
consensus_6597#1      GTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCAC 412
consensus_6597#2      GTAATTTACTAAACTAATGAAATTGGAAGCATATGCCGAAGGAAGGAAGGAAAATGGCAC 115
                      ******************************************** ****** * ******

consensus_6597#0      GACGAAGGCAATCCGGTAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCA 478
consensus_6597#1      GACGCAGGCGATCCGGCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCA 472
consensus_6597#2      GACGCAGGCGATCCGTCAGCTGAGAAAGTGGGATTTAGTTTTGTTTTCCATTCCGTTTCA 175
                      **** **** *****  *******************************************

consensus_6597#0      TTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTCGTTTGTTTTTGAGTTT 538
consensus_6597#1      T----------------------------------------------------------- 473
consensus_6597#2      TTTGATATCTTTTATGTGTGTTTTGTGTGTTTCCGTTTCGTTTGTTTTGAGTTTATTTGA 235
                      *                                                           

consensus_6597#0      ATTTGAATGTGGGAAAAGAAGAAGAAGAAGAAAAAAATGCATCTTTATATCTCATTTCTC 598
consensus_6597#1      ------------------------------------------------------------
consensus_6597#2      ATGTGGGCCAAGAAGGAGGAGAAGAAAAAACGCACCTTTATATCTCATTTCTCAACAAAA 295
                                                                                  

consensus_6597#0      AACAAAACCCCGCGCGCGCGCCTAGGTAATTCCAGTTTCGTTTCCACCAACGAACGTCGG 658
consensus_6597#1      ------------------------------------------------------------
consensus_6597#2      CCCCGCGCGCGCCTAGG------------------------------------------- 312
                                                                                  

consensus_6597#0      TCGCATAAATATAAATGTATGGCATGTG 686
consensus_6597#1      ----------------------------
consensus_6597#2      ----------------------------