|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1245 fasta sequence
[CTTGCCGACCCTGCCCTGTTGATCAATTGTCTTGCTTTGCGTCTCGCTTTTGTGAGGTGTACGTACGCACGTGCGTGCGCGTTTGTGTACTTTTACACCATTCAATCAATATTTTAATGTTTTCCACTTTTCACATTCACACCTTCTTGTCGTTGACTTTGTTTGAATGTTTCTCCCGCTCACTCTCTCTTTCACGCTCTCTCTCTATCACGCATTTCGTACCTTTTTTAAAAAAAGTTTATCAGGTAAGTTGACAAAAATACACTAAACAATAACAAGGAAATGAACAAAAGAAAGCTCAAGGGAAACGTAAAGGCAGGAAAAACTAAACACAACAGAAAGATATAGGAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAACAAAACGTATATAGCAACAAAAATTATGTACGAATAAATTTCACCTTATCACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACGCGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAGCAGTAAGATCAATTGATCAACAGAGCCAGCACGTGCATACAGTACGCGTGGTGCGTGAAAGGATATTGGAAAATCGCTGTGTGGCTTTAAAATCGGTTATCGGTCCTGAAGATGGCTCTGCTTTCGACAGCGCAATAAGAGCTGCTTTTCGGTCGTGTGACACAGCAGTGTACCAGGTAATGATCCCCAGACCGGCAGGCAGAGATGATCATGGAATCGATTCTACATTATGCCGGTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTTTCTCGCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCAGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGGGGG]
[+] EMBL BX611765 [CTTGCCGACCCTGCCCTGTTGATCAATTGTCTTGCTTTGCGTCTCGCTTTTGTGAGGTGTACGTACGCACGTGCGTGCGCGTTTGTGTACTTTTACACCATTCAATCAATATTTTAATGTTTTCCACTTTTCACATTCACACCTTCTTGTCGTTGACTTTGTTTGAATGTTTCTCCCGCTCACTCTCTCTTTCACGCTCTCTCTCTATCACGCATTTCGTACCTTTTTTAAAAAAAGTTTATCAGGTAAGTTGACAAAAATACACTAAACAATAACAAGGAAATGAACAAAAGAAAGCTCAAGGGAAACGTAAAGGCAGGAAAAACTAAACACAACAGAAAGATATAGGAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAACAAAACGTATATAGCAACAAAAATTATGTACGAATAAATTTCACCTTATCACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACGCGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAGCAGTAAGATCAATTGATCAACAGAGCCAGCACGTGCATACAGTACGCGTGGTGCGTGAAAGGATATTGGAAAATCGCTGTGTGGCTTTAAAATCGGTTATCGGTCCTGAAGATGGCTCTGCTTTCGACAGCGCAATAAGAGCTGCTTTTCGGTCGTGTGACA ]
[-] EMBL BX623429 [ CTCAAGGGAAACGTAAAGGCAGGAAAAACTAAACACAACAGAAAGATATAGGAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAACAAAACGTATATAGCAACAAAAATTATGTACGAATAAATTTCACCTTATCACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACGCGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAGCAGTAAGATCAATTGATCAACAGAGCCAGCACGTGCATACAGTACGCGTGGTGCGTGAAAGGATATTGGAAAATCGCTGTGTGGCTTT AAATCGGTTATCGGTCCTGAAGATGGCTCTGCTTTCGACAGCGCAATAGGAGCTGC TTTCGGTCGTGTGACACAGCAGTGTACCAGGTAATGATCCCCAGACCGGCAGGCAGAGATGATCATGGAATCGATTCTACATTATGCCGGTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCAC ]
[-] EMBL BX611766 [ GGTAATGATCCCCAGACCGGCAGGCAGAGATGATCATGGAATCGATTCTACATTATGC GTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTTTCTCGCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCAGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGGGGG]
consensusID : consensus_6599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1234 fasta sequence
[GAGATGATCATGGAATCTCGATTCTACAATATGCGTGTGGGTGAGTGGGGAGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGCTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTCTCTCGCTCTCTCTCTCTCTCTCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCCGGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGAGAGAGGGAAATATTTTTAAGAAATTAAACGTTTGCAAAATTATAGTACTTCGTTTCGACCATTTCGATTGCCCTTTTTCTAATGCACGCAATATAAATCCTATCCTTCTTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTGTGTGGTTCCGGTACGAGTTATCGTGCCTTTTTGTTTCAAACGTTTCATTTGTTCCTCTGTTCCTGTTCTTCAACGTTTGTTTTGAAAGCAGTTAAAGGGGGGGATAGGACACACTTTCCTACCCCAGTGCCACGCCAGAGCCCTCAGCTGTCAGTTGTCGGCGGAAATGGGTTTGATGTTTGATGTTGGTGTCGCCCACGGCCATTGATTAATTGGTTTGTCACTTGAACGCTGCCAACTGGCCAATTCGTGCGGAAGCGGACACTCCGCCGAAAGAATGTAATGGCTATATGCACTCTTCGTAGATGCATTTCTTCTTTTTTTGCACCGTTCCTGTGCGACAGTGCCGGTGGCAGCTCGTTGGCCAACAGCCAACCGCTAGACCGCTGATTGGTGCCAACGAAAAACCACAGGCACAAGCGACCGAAACTCAATTTCAATGCTTGTTAGTTAAACTAAAAAAAGACATCCTCGGACAGAGGTGGGGGAGGGGGGAGAGGTGGGGGGCTTCGATGCTGCTGCTTCATTCATCAATCTCATCTTCATTGACTGTGCGGCAAAGAGTGATCGAGCTGACTGTT]
[-] EMBL BM601376 [GAGATGATCATGGAATCTCGATTCTACAATATGCGTGTGGGTGAGTGGGGAGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGCTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTCTCTCGCTCTCTCTCTCTCTCTCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCCGGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGAGAGAGGGAAATATTTTTAAGAAATTAAACGTTTGCAAAATTATAGTACTTCGTTTCGACCATTTCGATTGCCCTTTTTCTAATGCACGCAATATAAATCCTATCCTTCTTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTGTGTGGTTCCGG ]
[-] EMBL BX610171 [ CAATATAAATCCTATCCTTCCTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTGTGTGGTTCGTGTACGAGTTATCGTGCCTTTTTGTTTCAAACGTTTCATTTGTTCCTCTGTTCCTGTTCTTCAACGTTTGTTTTGAAAGCAGTTAAAGGGGGGGATAGGACACACTTTCCTACCCCAGTGCCACGCCAGAGCCCTCAGCTGTCAGTTGTCGGCGGAAATGGGTTTGATGTTTGATGTTGGTGTCGCCCACGGCCATTGATTAATTGGTTTGTCACTTGAACGCTGCCAACTGGCCAATTCGTGCGGAAGCGGACACTCCGCCGAAAGAATGTAATGGCTATATGCACTCTTCGTAGATGCATTTCTTCTTTTTTTGCACCGTTCCTGTGCGACAGTGCCGGTGGCAGCTCGTTGGCCAACAGCCAACCGCTAGACCGCTGATTGGTGCCAACGAAAAACCACAGGCACAAGCGACCGAAACTCAATTTCAATGCTTGTTAGTTAAACTAAAAAAAGACATCCTCGGACAGAGGTGGGGGAGGGGGGAGAGGTGGGGGGCTTCGATGCTGCTGCTTCATTCATCAATCTCATCTTCATTGACTGTGCGGCAAAGAGTGATCGAGCTGACTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6599#0 -------------CTTGCCGACCCTGCCCTGT-----TGATCAATTGTCTTGCTTTGCGT 42
consensus_6599#1 GAGATGATCATGGAATCTCGATTCTACAATATGCGTGTGGGTGAGTGGGGAGACATGAAT 60
* *** ** * * * ** * ** * ** *
consensus_6599#0 CTCGCTTTTGTGAGGTGTACG-TACGCACGTGCG---TGCGCGTTTGTGTACTTTTACAC 98
consensus_6599#1 GGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCG-ATCTCTTTTCTT 119
* *** * *** * ** * * * * * *** * * *** *
consensus_6599#0 CATTCAATCAATATTTTAATGTTTTCC---ACTTTTCAC-ATTCACAC-CTTCTTGTCGT 153
consensus_6599#1 TACGTGTGCTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTT 179
* * * * **** * ** **** * ****** * *** * *
consensus_6599#0 TGACTTTGTTTGAATGTTTCTCCCGCTCACTCTCTCTTTCACGCTCTCTCTCTATCACGC 213
consensus_6599#1 CGATTGCGATCGATCATTCCTACT--TCACTTTCTC--TCGCTCTCTCTCTCTCTCTCTC 235
** * * * ** ** ** * ***** **** ** * ********** ** * *
consensus_6599#0 ATTTCGTACCTTTTTTAAAAAAAGTTTATCAGGTAAGTTGACAAAAATACACTAAACAAT 273
consensus_6599#1 TTTTTGCAATTTGTGTGCATATAGCTAATCTTTT--TCCATCCATTAACTGTGGGTTCCC 293
*** * * ** * * * * ** * *** * * * *
consensus_6599#0 AACAAGGAAATGAACAAAAGAAAGCTCAAGGGAAACGTAAAGGCAGGAAAAA-----CTA 328
consensus_6599#1 GGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTA 353
** ** ** ** * * * ** *** ***
consensus_6599#0 AACACAACA-GAAAGATATAG-GAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAA 386
consensus_6599#1 AATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAA 413
** * * * *** * * ** * *** * * ******* * *******
consensus_6599#0 -CAAAACGTATATAGCAACAAAA--------ATTATGTACGAATA-AATTTCACCTTAT- 435
consensus_6599#1 ACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACG 473
*** * *** * **** ** *** * * ***
consensus_6599#0 CACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACG 495
consensus_6599#1 CACGTTTTTCTTTTTCTTTTTTTTTTGGGAGAGAGGGAAATATTTTTAAGAAATTAAACG 533
*** * * ******* * * * ** *** ** ** ** ** ** ***
consensus_6599#0 CGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAG 555
consensus_6599#1 TTTGCAAAATTATAGTACTTCGTTTCGACCATTTCGATTGCCCTTTTTCTAATGCACGCA 593
** * * * * * * *** * * * *
consensus_6599#0 CAGTAAGATCAATTGATCAACAGA-GCCAGCACGTGCATACA-GTACGCGTG-GTGCGTG 612
consensus_6599#1 ATATAAATCCTATCCTTCTTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTG 653
*** * ** ** * **** * *** * * * *** *** ***
consensus_6599#0 AAAGGATATTGGA-AAATCGCTGTGTGGCTTTAAAATCGGT-TATCGGTCCTGAAGATGG 670
consensus_6599#1 TGTGGTTCCGGTACGAGTTATCGTGCCTTTTTGTTTCAAACGTTTCATTTGTTCCTCTGT 713
** * * * * * *** *** * ** * * **
consensus_6599#0 CTCTGCT-TTCGACAGC-GCAATAAGAGCTGCTTTTCGGTCGTGT--GACACAGCAGTGT 726
consensus_6599#1 TCCTGTTCTTCAACGTTTGTTTTGAAAGCAGTTAAAGGGGGGGATAGGACACACTTTCCT 773
*** * *** ** * * * *** * * ** * * ****** *
consensus_6599#0 ACCAGGTAATGATCCCCAGACCGGCAGGCAGAGATGATCA-TGGAATCGATTCTACATTA 785
consensus_6599#1 ACCCCAGTGCCACGCCAGAGCCCTCAGCTGTCAGTTGTCGGCGGAAATGGGTTTGATGTT 833
*** * ** ** *** * ** **** * * * *
consensus_6599#0 TGCCGGTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAA 845
consensus_6599#1 TGATGTTGGTGTCGCCCACGGCCAT-TGATTAATTGGTTTGTCACTTGAACGCTGCCAAC 892
** * ** * * ** * *** * * ** * * * * * * **
consensus_6599#0 AGGG-GATTTTTATGTT--CGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGC 902
consensus_6599#1 TGGCCAATTCGTGCGGAAGCGGACACTCCGCCGAAAGAATGTAATGGCTATATG------ 946
** *** * * ** * ** * * * *** * * ****
consensus_6599#0 GAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCAT-TCCTACTTC 961
consensus_6599#1 ----CACTCTTCG---TAGATGCATTTCTTCTTTTTTTGC-ACCGTTCCTGTGCGACAGT 998
** * *** * ** ** * ** **** * ** ** * * * **
consensus_6599#0 ACTTTTTCTCGCTCTTT---TTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCAT 1018
consensus_6599#1 GCCGGTGGCAGCTCGTTGGCCAACAGCCAACCGCTAGACCGCTGAT-TGGTGCCAACGAA 1057
* * **** ** ** * * *** ** * * *** * *
consensus_6599#0 TAACTGTGGGTTCCAGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAG 1078
consensus_6599#1 AAACCACAGGCACAAGCGA--CCGAAACTCAATTT--CAATGCTTGTTAGTTAAACTAAA 1113
*** ** * ** * * * * *** * * ***** ** ***
consensus_6599#0 TAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAAC 1138
consensus_6599#1 AAAAGACATCCTCGGACAGA-GGTGGGGGAGGGGGGAGAGGTGGGGGGCTT---CGATGC 1169
*** * * * * ** * ** * * * ** * * * *
consensus_6599#0 ATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCC 1198
consensus_6599#1 TGCTGCTTCATTCATCAATCT-CATCTTCATTGACTGTGCGGCAAAGAGTGATCGAGCTG 1228
* ** * * **** * * * * * *** * *** * ***
consensus_6599#0 GACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGGGGG 1245
consensus_6599#1 ACTGTT----------------------------------------- 1234
* *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||