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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1036 fasta sequence
[CTTCCCCATGGTAGTCTATCGCAAGCTGATGGGCATGAAAGGCTCATTTCTCGATCTGAAGGATTTAAATCCGGTACTGTTCAATAGCTTAAAATCGCTGCTCGACTATACGGAAAACGACATGGAGGAGGTATTTATGCAAACGTTCAAAATCGGCTACCGGGATGTGTTTGGGAACCTGCTCGAGCACGAACTGAAACCGGACGGTGACAAGATATTCGTTACGCAGGACAACAAGCAAGACTTTGTCGAACTGTACAGCGACTTTATGCTGAACAAGAGCGTCGAGAAGCAGTTCAACGCGTTCCGCAGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCCAGCTGCCAGAGGACATTGTGTTTGATGCTGTGGTGTGCAGTAGAAAAATTGTTTTTATATTGTTCATATTTTTTTTGTCACCTGTATTTATGTGTCCATCAAATGTGTACGTTTGATTTTTGTACCAAGACTCTACGC]
[+] EMBL BX608625 [CTTCCCCATGGTAGTCTATCGCAAGCTGATGGGCATGAAAGGCTCATTTCTCGATCTGAAGGATTTAAATCCGGTACTGTTCAATAGCTTAAAATCGCTGCTCGACTATACGGAAAACGACATGGAGGAGGTATTTATGCAAACGTTCAAAATCGGCTACCGGGATGTGTTTGGGAACCTGCTCGAGCACGAACTGAAACCGGACGGTGACAAGATATTCGTTACGCAGGACAACAAGCAAGACTTTGTCGAACTGTACAGCGACTTTATGCTGAACAAGAGCGTCGAGAAGCAGTTCAACGCGTTCCGCAGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCG ]
[+] EMBL BX615309 [ AAAATCGCTGCTCGACTATACGGAAAACGACATGGAGGAGGGATTTGTGCAAACGTTCAAAATCGGCTACCGGGAGGTGTTTGGGAACCTGCTCGAGCACGAACTGAAACCGGACGGGGACAATATATTCGTTACGCAGGAAAACAAGCAAGACTTTGT ]
[+] EMBL BX612605 [ CGAAAGCCCGCTCCATCTGCTGTTCCGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCCAGCTGCCAGAGGACATTGTGTTTGATGCTGTGGTGTGCAGTAGAAAAATTGTTTTTATATTGTTCATATTTTTTTTGTCACCTGTATTTATGTGTCCATCAAATGTGTACGTTTGATTTTTGTACCAAGACTCTACGC]
consensusID : consensus_6606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[AGGTTTACAGTGACTTTATGCTGAACAAGAGCGTTGAGAAGCAGTTCAACGCGTTCCGCAGGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCTGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTATGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGGACTTTTGGTCGATTGTGCACCGGGCTGTCGCATGGAGGTAAAAAGAAAGTTGGCTTCAAACTTCAACCACGGAGCTTCCGATCGGTGTATCCTGTGGCGTGGGTCTTAGTTCCCGGAATTCTCGGAANANGCCTTAGGNGTTAGGTTAAGCCGGCGGCCAAACCAGGTTACCCCGGAAACAGACAGGAACACCGGAATTATATGGACCCCGGAACCGAAAGGTTACCAACAANACCTTGGACCTCTCAANACTTGGGTTAGCACTTTGGGCNGTTTAACACTTTGTACCCCACGGAACAGGGCTTTTAACCACAAAGATTTGTACCCACGANAATGGGTGCAAAACACACACGGTACATCCTGGTCAACGGTGGCGCAAAACCGGGCAACCCTTTGGGCCGTTGGCAAACAACAACAGAGCACNGGAAATTNCCATCAAACGCGTTAAAGTT]
[+] EMBL AL695579 [AGGTTTACAGTGACTTTATGCTGAACAAGAGCGTTGAGAAGCAGTTCAACGCGTTCCGCAGGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCTGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTATGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGGACTTTTGGTCGATTGTGCACCGGGCTGTCGCATGGAGGTAAAAAGAAAGTTGGCTTCAAACTTCAACCACGGAGCTTCCGATCGGTGTATCCTGTGGCGTGGGTCTTAGTTCCCGGAATTCTCGGAANANGCCTTAGGNGTTAGGTTAAGCCGGCGGCCAAACCAGGTTACCCCGGAAACAGACAGGAACACCGGAATTATATGGACCCCGGAACCGAAAGGTTACCAACAANACCTTGGACCTCTCAANACTTGGGTTAGCACTTTGGGCNGTTTAACACTTTGTACCCCACGGAACAGGGCTTTTAACCACAAAGATTTGTACCCACGANAATGGGTGCAAAACACACACGGTACATCCTGGTCAACGGTGGCGCAAAACCGGGCAACCCTTTGGGCCGTTGGCAAACAACAACAGAGCACNGGAAATTNCCATCAAACGCGTTAAAGTT]
consensusID : consensus_6606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[GCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGTTAAGTAACGTACCTTGAACGTTTACGCAAAGCCGGTGTCGAATAAACCTTACGATTTTTATTTTCTGAAAACATCTAGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCC]
[+] EMBL BX613835 [GCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGTTAAGTAACGTACCTTGAACGTTTACGCAAAGCCGGTGTCGAATAAACCTTACGATTTTTATTTTCTGAAAACATCTAGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6606#0 CTTCCCCATGGTAGTCTATCGCAAGCTGATGGGCATGAAAGGCTCATTTCTCGATCTGAA 60
consensus_6606#2 ------------------------------------------------------------
consensus_6606#1 ------------------------------------------------------------
consensus_6606#0 GGATTTAAATCCGGTACTGTTCAATAGCTTAAAATCGCTGCTCGACTATACGGAAAACGA 120
consensus_6606#2 ------------------------------------------------------------
consensus_6606#1 ------------------------------------------------------------
consensus_6606#0 CATGGAGGAGGTATTTATGCAAACGTTCAAAATCGGCTACCGGGATGTGTTTGGGAACCT 180
consensus_6606#2 ------------------------------------------------------------
consensus_6606#1 ------------------------------------------------------------
consensus_6606#0 GCTCGAGCACGAACTGAAACCGGACGGTGACAAGATATTCGTTACGCAGGACAACAAGCA 240
consensus_6606#2 ------------------------------------------------------------
consensus_6606#1 ------------------------------------------------------------
consensus_6606#0 AGACTTTGTCGAACTGTACAGCGACTTTATGCTGAACAAGAGCGTCGAGAAGCAGTTCAA 300
consensus_6606#2 ------------------------------------------------------------
consensus_6606#1 -----------AGGTTTACAGTGACTTTATGCTGAACAAGAGCGTTGAGAAGCAGTTCAA 49
consensus_6606#0 CGCGTTCCGCAGGGG-TTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCC 359
consensus_6606#2 ------------------------------------------------------------
consensus_6606#1 CGCGTTCCGCAGGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCC 109
consensus_6606#0 -GCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTT-TGATTTCGACGAGCT 417
consensus_6606#2 -----------------GCTGATTGTGTGTGGCAGCAAGGAGTT-TGATTTCGACGAGCT 42
consensus_6606#1 TGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTATGATTTCGACGAGCT 169
*************************** ***************
consensus_6606#0 CGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGG-ACT 476
consensus_6606#2 CGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGG-ACT 101
consensus_6606#1 CGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGGACT 229
******************************************************** ***
consensus_6606#0 TTTGGTCGATTGTGCAC-GGGCTGTCG-ATGGAGGTAAAAAGAAAGTTG-CTTCAA---T 530
consensus_6606#2 TTTGGTCGATTGTGCAC-GGGCTGTCG-ATGGAGGTAAAAAGAAAGTTG-CTTCAA---T 155
consensus_6606#1 TTTGGTCGATTGTGCACCGGGCTGTCGCATGGAGGTAAAAAGAAAGTTGGCTTCAAACTT 289
***************** ********* ********************* ****** *
consensus_6606#0 TCACCACGG--------------------------------------------------- 539
consensus_6606#2 TCACCACGGTTAAGTAACGTACCTTGAACGTTTACGCAAAGCCGGTGTCGAATAAACCTT 215
consensus_6606#1 CAACCACGG------------------------------AGCTTCCGATCGGTGTATCCT 319
*******
consensus_6606#0 ----------------------------GCTCCGATCGTGTTCCCGTCGGTGGTCTTAGT 571
consensus_6606#2 ACGATTTTTATTTTCTGAAAACATCTAGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGT 275
consensus_6606#1 GTGGCGTGGGTCTT-------------AGTTCCCG--GAATTCTCGGAANANGCCTTAGG 364
* *** * *** ** * *****
consensus_6606#0 CGATTG---AAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGT 628
consensus_6606#2 CGATTG---AAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGT 332
consensus_6606#1 NGTTAGGTTAAGCCGGCGGCCAAACCAGGTTACCCCGGAAACAGACAGGAACACCGGAAT 424
* * * **** * ** * **** * * * * ** *
consensus_6606#0 CATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAA 688
consensus_6606#2 CATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAA 392
consensus_6606#1 TATATGGACCCCGGAAC-CGAAAGGTTACCAACAANACCTTGGACCTCTCAANACTTGGG 483
*** * * * ** ** * * * * * *
consensus_6606#0 CGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTG--TAGAACTGCACAC 746
consensus_6606#2 CGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTG--TAGAACTGCACAC 450
consensus_6606#1 TTAGCACTTTGGGCNGTTTAACACTTTGTACCCCACGGAACAGGGCTTTTAACCACAAAG 543
* ** ** * * * * * * *** * * * *** ** *
consensus_6606#0 GCCTGTGT----GTGTATGTGGCCAAGCAATGCTCAACAAGTC--AGTCCATCACTTCGT 800
consensus_6606#2 GCCTGTGT----GTGTATGTGGCCAAGCAATGCTCAACAAGTC--AGTCCATCACTTCGT 504
consensus_6606#1 ATTTGTACCCACGANAATGGGTGCAAAACACACACGGTACATCCTGGTCAACGGTGGCGC 603
*** * *** * *** * * * * ** *** * **
consensus_6606#0 TCAATCGTGTTCTCGTTCAACTCAACGAGGAA-GACGACAC--CAAGCAAAATTGAAATG 857
consensus_6606#2 TCAATCGTGTTCTCGTTCAACTCAACGAGGAA-GACGACAC--CAAGCAAAATTGAAATG 561
consensus_6606#1 AAAACCGGGCAACCCTTTGGGCCGTTGGCAAACAACAACAGAGCACNGGAAATTNCCATC 663
** ** * * ** * * ** ** *** ** ***** **
consensus_6606#0 ACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCCAGCTGCCAGAGGACATTGT 917
consensus_6606#2 ACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCC------------------- 602
consensus_6606#1 AAAC-GCGTTAAAGTT-------------------------------------------- 678
* * **** * **
consensus_6606#0 GTTTGATGCTGTGGTGTGCAGTAGAAAAATTGTTTTTATATTGTTCATATTTTTTTTGTC 977
consensus_6606#2 ------------------------------------------------------------
consensus_6606#1 ------------------------------------------------------------
consensus_6606#0 ACCTGTATTTATGTGTCCATCAAATGTGTACGTTTGATTTTTGTACCAAGACTCTACGC 1036
consensus_6606#2 -----------------------------------------------------------
consensus_6606#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||