cluster # 661

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Anopheles gambiae
cluster # 661 cluster # 661 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_661#0 length = 464 sequences # 1

consensus_661#1 length = 437 sequences # 1

consensusID : consensus_661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [TTTTTTTTGATGAGAAAACGTTTTATTCTTTAACGTTCACTCCTTGCGATTCGTGCAGACAGGAATTATAATTGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTATTACATCTTGTATCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAGCGCTCGCTGTACCTTGGGGTCATGCAACAGTGACGTTGGCATGGTGTTCGTACTCGGCTTGGTTTCGACTGAAGCTACAGGCTTCGCAACACCTAAAATCGATGGTTTGTTCATGATGTCCAAAATTTTCCTCTGCAGTTCTCGCTCCGTTTCCTGTTTGCTTTTTACCGGAGCAGCGGAAACTATCGGTGGTATTAGGGAGCTTGCGGTCGTACTATCCACATCCTCTCCCAGTTCCAGCCGGATCTGCGTCTCTTTGCGTTCGTTCAGATATTTGATTAGCC]

[+] EMBL AGA280593            [TTTTTTTTGATGAGAAAACGTTTTATTCTTTAACGTTCACTCCTTGCGATTCGTGCAGACAGGAATTATAATTGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTATTACATCTTGTATCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAGCGCTCGCTGTACCTTGGGGTCATGCAACAGTGACGTTGGCATGGTGTTCGTACTCGGCTTGGTTTCGACTGAAGCTACAGGCTTCGCAACACCTAAAATCGATGGTTTGTTCATGATGTCCAAAATTTTCCTCTGCAGTTCTCGCTCCGTTTCCTGTTTGCTTTTTACCGGAGCAGCGGAAACTATCGGTGGTATTAGGGAGCTTGCGGTCGTACTATCCACATCCTCTCCCAGTTCCAGCCGGATCTGCGTCTCTTTGCGTTCGTTCAGATATTTGATTAGCC]




>consensus_661#0
TTTTTTTTGATGAGAAAACGTTTTATTCTTTAACGTTCACTCCTTGCGATTCGTGCAGAC
AGGAATTATAATTGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTA
TTACATCTTGTATCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAG
CGCTCGCTGTACCTTGGGGTCATGCAACAGTGACGTTGGCATGGTGTTCGTACTCGGCTT
GGTTTCGACTGAAGCTACAGGCTTCGCAACACCTAAAATCGATGGTTTGTTCATGATGTC
CAAAATTTTCCTCTGCAGTTCTCGCTCCGTTTCCTGTTTGCTTTTTACCGGAGCAGCGGA
AACTATCGGTGGTATTAGGGAGCTTGCGGTCGTACTATCCACATCCTCTCCCAGTTCCAG
CCGGATCTGCGTCTCTTTGCGTTCGTTCAGATATTTGATTAGCC

consensusID : consensus_661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [CACGATCAAATGTTGCTGTTTTAATAAAAGTATTAGACGGATCCACAAAGCTGGACAGAACAGCTTTGCTTAACTATTGCGCGACTATTTCTGTGGGCCCGCCGCTGCGAATAATTGAAGAGAAAACGTTTTATTCTTTAACGTTCATTCCTTGCGATTCGTGCAGACAGGCATTATAATTGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTATTACATCTTGTATCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAGCGCTCGCTGTACCTTGGGGTCATGAACAAACCATCGATTTTAGGTGTTGCGAAGCCTGTAGCTTCAGTCGAAACCAAGCCGAGTACGAACACCATGCCAACGTCCACACTGTACCTTGGGGTCATGCAACAGTGCCCACGCGTCCGCGG]

[-] EMBL BM597311             [CACGATCAAATGTTGCTGTTTTAATAAAAGTATTAGACGGATCCACAAAGCTGGACAGAACAGCTTTGCTTAACTATTGCGCGACTATTTCTGTGGGCCCGCCGCTGCGAATAATTGAAGAGAAAACGTTTTATTCTTTAACGTTCATTCCTTGCGATTCGTGCAGACAGGCATTATAATTGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTATTACATCTTGTATCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAGCGCTCGCTGTACCTTGGGGTCATGAACAAACCATCGATTTTAGGTGTTGCGAAGCCTGTAGCTTCAGTCGAAACCAAGCCGAGTACGAACACCATGCCAACGTCCACACTGTACCTTGGGGTCATGCAACAGTGCCCACGCGTCCGCGG]




>consensus_661#1
CACGATCAAATGTTGCTGTTTTAATAAAAGTATTAGACGGATCCACAAAGCTGGACAGAA
CAGCTTTGCTTAACTATTGCGCGACTATTTCTGTGGGCCCGCCGCTGCGAATAATTGAAG
AGAAAACGTTTTATTCTTTAACGTTCATTCCTTGCGATTCGTGCAGACAGGCATTATAAT
TGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTATTACATCTTGTA
TCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAGCGCTCGCTGTAC
CTTGGGGTCATGAACAAACCATCGATTTTAGGTGTTGCGAAGCCTGTAGCTTCAGTCGAA
ACCAAGCCGAGTACGAACACCATGCCAACGTCCACACTGTACCTTGGGGTCATGCAACAG
TGCCCACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_661#0      ------------------------------------------------------------
consensus_661#1      CACGATCAAATGTTGCTGTTTTAATAAAAGTATTAGACGGATCCACAAAGCTGGACAGAA 60
                                                                                 

consensus_661#0      ------------------------------------------------TTTTTTTTGATG 12
consensus_661#1      CAGCTTTGCTTAACTATTGCGCGACTATTTCTGTGGGCCCGCCGCTGCGAATAATTGAAG 120
                                                                        *  **** *

consensus_661#0      AGAAAACGTTTTATTCTTTAACGTTCACTCCTTGCGATTCGTGCAGACAGGAATTATAAT 72
consensus_661#1      AGAAAACGTTTTATTCTTTAACGTTCATTCCTTGCGATTCGTGCAGACAGGCATTATAAT 180
                     *************************** *********************** ********

consensus_661#0      TGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTATTACATCTTGTA 132
consensus_661#1      TGCAGGTATTATTATAATTTAAATGTTTAAAATAGGTTATAATGCTTATTACATCTTGTA 240
                     ************************************************************

consensus_661#0      TCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAGCGCTCGCTGTAC 192
consensus_661#1      TCCCACGTTAACGTTTGAAAACAACTGACTTTGCAACAGTGAGTCTAGCGCTCGCTGTAC 300
                     ************************************************************

consensus_661#0      CTTGGGGTCATGCAACAGTGACGTTGGCATGGTGTTCGTACTCGGCTTGGTTTCGACTGA 252
consensus_661#1      CTTGGGGTCATG-------------AACAAACCATCGATTTTAGGTGTTGCGAAGCCTGT 347
                     ************               **     *   *  * **  * *    * *** 

consensus_661#0      AGCTACAGGCTTCGCAACACCTAAAATCGATGGTTTGTTCATGATGTCCAAAATTTTCCT 312
consensus_661#1      AGCTTCAGTCGAAACCAAGCCGAGTACGAACACCATGC---CAACGTCCACACTGTACCT 404
                     **** *** *    * *  ** *  *   *     **      * ***** * * * ***

consensus_661#0      CTGCAGTTCTCGCTCCGTTTCCTGTTTGCTTTTTACCGGAGCAGCGGAAACTATCGGTGG 372
consensus_661#1      TGG--GGTCATGCAACAGTGCCCACGCGTCCGCGG------------------------- 437
                       *  * **  **  *  * **     *                                

consensus_661#0      TATTAGGGAGCTTGCGGTCGTACTATCCACATCCTCTCCCAGTTCCAGCCGGATCTGCGT 432
consensus_661#1      ------------------------------------------------------------
                                                                                 

consensus_661#0      CTCTTTGCGTTCGTTCAGATATTTGATTAGCC 464
consensus_661#1      --------------------------------