cluster # 6614

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Anopheles gambiae
cluster # 6614 cluster # 6614 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6614#0 length = 1202 sequences # 3

consensus_6614#1 length = 405 sequences # 1
consensus_6614#2 length = 394 sequences # 1

consensusID : consensus_6614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1202
fasta sequence

                              [GCAGAATCCCCCGAGGTTTCACACAGCAGCACAGCAAACGGCGACGGTGGCGGCAGGCAAGAAGGATCAGCTCAAGATGGACAAGAACCACTTCACGAAGGACGCGGAAGCGTCGTCCTCCAACTCGGACGAAAGCTGGGAGAAGGAGTTCGAGCTGGAATGAGGCGAACCGATCGATCTGCGCCGCGAGCTGTCCGAGTGCGCCGATTGGTCATCGTTTCGTTACGCTCCCTAGGATTTGTTTTTCATCCTCCCTCCCCCAGCTTTTTCGACCTCAAACTGCGATGAACTGGACCTCTGCTTCTCCTTCTCCTCTTCTCGATTGATACGAATGGCGTCCAACACAATACGCGGTGGGNGCTGGCTGGTCCCGGAATTGAGTGGATTCCGTGTGCTTCGCGACTACGTCGAAGGTGCCCCACACGTGGGTGGATGTAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGCACGTGTCGGTAGTGTCCTAACGGTTGGGCGGAACGTTTTGGATAGGCGCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGA-GAAGGGACACGTTCCAGAGGGTATGATA-GTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTTACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATGTGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAAGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTGAAAACGTGATCGTGACTATGTTTTTTTGGAGGAGATGAGTAACAACGCCAGAACAACAACGACGACGATACCGCGCAATTCTTCGATCATTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTA]

[+] EMBL AL930311             [GCAGAATCCCCCGAGGTTTCACACAGCAGCACAGCAAACGGCGACGGTGGCGGCAGGCAAGAAGGATCAGCTCAAGATGGACAAGAACCACTTCACGAAGGACGCGGAAGCGTCGTCCTCCAACTCGGACGAAAGCTGGGAGAAGGAGTTCGAGCTGGAATGAGGCGAACCGATCGATCTGCGCCGCGAGCTGTCCGAGTGCGCCGATTGGTCATCGTTTCGTTACGCTCCCTAGGATTTGTTTTTCATCCTCCCTCCCCCAGCTTTTTCGACCTCAAACTGCGATGAACTGGACCTCTGCTTCTCCTTCTCCTCTTCTCGATTGATACGAATGGCGTCCAACACAATACGCGGTGGGNGCTGGCTGGTCCCGGAATTGAGTGGATTCCGTGTGCTTCGCGACTACGTCGAAGGTGCCCCACACGTGGGTGGATGTAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGCACGTGTCGGTAGTGTCCTAACGGTTGGGCGGAACGTTTTGGATAGGCGCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGTGTATAAGGGGAAGCACACAGGACGAAGGGACACGTTGCAGAGGGTATGATACGTGTCCAAACTTTCCCTTCCCTCATGATGGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX616128             [                                                                                                                                                                                                                                                                                                    GACCTCTGCTTCTCCTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGG GCT GCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCCACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGCACGTGTCGGTAGTGTCCTAACGGTTGCGATGAGCGTTTTGGATAGGCGCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGA GAAGGGACACGTTCCAGAGGGTATGATA GTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTTACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATGTGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAAGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGG                                                                                                                                    ]
[+] EMBL BX612914             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGA GAAGGGACACGTTCCAGAGGGTATGATA GTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTTACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATGTGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAGGGGAAGGTCCGTTCCGAACAAAACGGAACAATCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTGAAAACGTGATCGTGACTATGTTTTTTTGGAGGAGATGAGTAACAACGCCAGAACAACAACGACGACGATACCGCGCAATTCTTCGATCATTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTA]




>consensus_6614#0
GCAGAATCCCCCGAGGTTTCACACAGCAGCACAGCAAACGGCGACGGTGGCGGCAGGCAA
GAAGGATCAGCTCAAGATGGACAAGAACCACTTCACGAAGGACGCGGAAGCGTCGTCCTC
CAACTCGGACGAAAGCTGGGAGAAGGAGTTCGAGCTGGAATGAGGCGAACCGATCGATCT
GCGCCGCGAGCTGTCCGAGTGCGCCGATTGGTCATCGTTTCGTTACGCTCCCTAGGATTT
GTTTTTCATCCTCCCTCCCCCAGCTTTTTCGACCTCAAACTGCGATGAACTGGACCTCTG
CTTCTCCTTCTCCTCTTCTCGATTGATACGAATGGCGTCCAACACAATACGCGGTGGGNG
CTGGCTGGTCCCGGAATTGAGTGGATTCCGTGTGCTTCGCGACTACGTCGAAGGTGCCCC
ACACGTGGGTGGATGTAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGCACGTGTCGGTA
GTGTCCTAACGGTTGGGCGGAACGTTTTGGATAGGCGCGAAAAGTGGAAGCGTGCAACGT
TTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGAT
CGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGTTCCAG
AGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTTACTAG
AGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATGTGTAC
TTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCGCATTT
CGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAGGGGAA
GGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACT
CTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTT
TAAGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTGAAAACGTG
ATCGTGACTATGTTTTTTTGGAGGAGATGAGTAACAACGCCAGAACAACAACGACGACGA
TACCGCGCAATTCTTCGATCATTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCG
TA

consensusID : consensus_6614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [AGATCGCAGAGGTCTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGGGCTGCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCCACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGGCACGTGTCGGTAGTGTCCTAACGGTTGCGATGAGCGTTTTTTGGATAGGCGCCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGTTCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCAT]

[+] EMBL AL697148             [AGATCGCAGAGGTCTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGGGCTGCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCCACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGGCACGTGTCGGTAGTGTCCTAACGGTTGCGATGAGCGTTTTTTGGATAGGCGCCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGTTCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCAT]




>consensus_6614#1
AGATCGCAGAGGTCTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCG
GTGGGGCTGCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGT
GCCCCACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGGCACGTG
TCGGTAGTGTCCTAACGGTTGCGATGAGCGTTTTTTGGATAGGCGCCGAAAAGTGGAAGC
GTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAG
TTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGAC
ACGTTCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCAT

consensusID : consensus_6614#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [CCGCCCACGCGTCCGAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACGTAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTAAAAACGTGATCGTGACTATGTTTTTGGAGAAGATGAGCAACAACGCCAGAACTACAACGACGACGATACCGCGCAATTCTTCGATCGTTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTATTTTATTACC]

[+] EMBL BM582549             [CCGCCCACGCGTCCGAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACGTAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTAAAAACGTGATCGTGACTATGTTTTTGGAGAAGATGAGCAACAACGCCAGAACTACAACGACGACGATACCGCGCAATTCTTCGATCGTTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTATTTTATTACC]




>consensus_6614#2
CCGCCCACGCGTCCGAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGAT
AAGTAGTAGTGATACGTAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTT
CCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTC
ATGTATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCTAACCC
TTCTGGCCATCTGGTAAAAACGTGATCGTGACTATGTTTTTGGAGAAGATGAGCAACAAC
GCCAGAACTACAACGACGACGATACCGCGCAATTCTTCGATCGTTCGAGTCACACGAAGC
AAATGATTAATAAAGTGAACCGTATTTTATTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6614#0      GCAGAATCCCCCGAGGTTTCACACAGCAGCACAGCAAACGGCGACGGTGGCGGCAGGCAA 60
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      GAAGGATCAGCTCAAGATGGACAAGAACCACTTCACGAAGGACGCGGAAGCGTCGTCCTC 120
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      CAACTCGGACGAAAGCTGGGAGAAGGAGTTCGAGCTGGAATGAGGCGAACCGATCGATCT 180
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      GCGCCGCGAGCTGTCCGAGTGCGCCGATTGGTCATCGTTTCGTTACGCTCCCTAGGATTT 240
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      GTTTTTCATCCTCCCTCCCCCAGCTTTTTCGACCTCAAACTGCGATGAACTGGACCTCTG 300
consensus_6614#1      ---------------------------------------------------AGATCGCAG 9
consensus_6614#2      ---------------------------------------------CCGCCCACGCGTCCG 15
                                                                               * *

consensus_6614#0      CTTCTCCTTCTCCTCTTCTCGATTGATACGAATGGCGTCCAACACAATACGCGGTGGGNG 360
consensus_6614#1      AGGT--CTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGGGC 67
consensus_6614#2      AGCGCATTTCGCACAGTTGCTCTTTGAGT---TTCCTTCCAGAGGGATAAGTAGTAGTGA 72
                             *** *    *  *  **        *  * ****     *** *  ** *   

consensus_6614#0      CTGGCTGGTCCCGGAATTGAGTGGATTCCGTGTGCTTCGCGACTACGTCGAAGGTGCCCC 420
consensus_6614#1      T--GCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCC 125
consensus_6614#2      TACGTAGG----GGAA---GGTCCGTTCCGAACAAAACGGAACAAG--CGACCAT-TTCC 122
                         *  **    ****    **   ** **       **   * *   **    *   **

consensus_6614#0      ACACGTGGGTGGATGTAAGGGTTTTGTGCAAAATTAAGGCAGAACTTG-CACGTGTCGGT 479
consensus_6614#1      ACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGGCACGTGTCGGT 185
consensus_6614#2      ATCTATCCATCTACCTAACACTCTAGT-TAAAAACGATCCGGCGACCGCGTTATGTT--T 179
                      *    *   *  *  ***   * * **  ****   *  * *     *     ***   *

consensus_6614#0      AGTGTCCTAACGGTTGGG-CGGAACGTTTT--GGATAGGCGC-GAAAAGTGGAAGCGTGC 535
consensus_6614#1      AGTGTCCTAACGGTTGCG-ATGAGCGTTTTTTGGATAGGCGCCGAAAAGTGGAAGCGTGC 244
consensus_6614#2      CATGT----ATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCT 235
                        ***    * *  ** *   *  ******  *  ***       **    *   * *  

consensus_6614#0      AACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAA 595
consensus_6614#1      AACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAA 304
consensus_6614#2      AACCCTTCTGGCCATCTGGTAAAAACGTGATCGTGACTATGTTTTTGGAGA---AGATGA 292
                      ***  *****   ***   * *     *   *  *  *** ** ** **     ** * *

consensus_6614#0      GCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGT 655
consensus_6614#1      GCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGT 364
consensus_6614#2      GCAA-CAACGCCAGAACTACAACGACG-ACGATACCGCGCAATTCTTCGATCGTTCGAGT 350
                      ** * *  **   *    *      ** *  *      ***       **  *  *  **

consensus_6614#0      TCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTT 715
consensus_6614#1      TCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCAT------------------- 405
consensus_6614#2      CACACGAAGCA-AATGATTAATAAAGTGAACCGTATTTTATTACC--------------- 394
                        **    * *  **  *    *** *   ** *   * **                   

consensus_6614#0      ACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATG 775
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      TGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCG 835
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      CATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAG 895
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      GGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTA 955
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      ACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTG 1015
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      CGTTTTAAGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTGAAA 1075
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      ACGTGATCGTGACTATGTTTTTTTGGAGGAGATGAGTAACAACGCCAGAACAACAACGAC 1135
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      GACGATACCGCGCAATTCTTCGATCATTCGAGTCACACGAAGCAAATGATTAATAAAGTG 1195
consensus_6614#1      ------------------------------------------------------------
consensus_6614#2      ------------------------------------------------------------
                                                                                  

consensus_6614#0      AACCGTA 1202
consensus_6614#1      -------
consensus_6614#2      -------