cluster # 6619

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Anopheles gambiae
cluster # 6619 cluster # 6619 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6619#0 length = 972 sequences # 4

consensus_6619#1 length = 587 sequences # 1

consensusID : consensus_6619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 972
fasta sequence

                              [CCGCGGACGCGTGGGCGCGACGATACAGCTGGCGGAGCCGGGGCTGCGGTACGAGTGCGTGATGGCGAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGCGAGGACGGCTTCCTGTACATTTACAGCTTCGAGGACTCGAAGGGTGGCGAATGTAAGCTCATTCGTGCGCACGATCTCCGTACGCCACTGCACGGCATTACCGAAGTTGACATCGTCGGCAATGAGAACGATGAAAACACAAACAGCCTGAACGTGAACATGACGAAGTCGATGCTGCCGGCGCCGGGCACGTACGCTGGCGTTCTGAAGGGACGTCCGGCCGACCGGATGTCAGACTCCGACTGGTGCCACGATTTGCGCGAGGCGGTCGAGTATCCGGTCAAGGTGACGGTGCCGATCTACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCACGGCAGCGCAGCAGCACCCCC-GGGAAGGAGGTGATCATCAACAGCACCACCACCACCATCATCACCACCACCATCCGCCCACCAAGATGCGACCCACTGGCAAATCGTTCCCCTCGAAGGCAGCAGCCGGCGTTGGCTGCAAGGGTTGAAGGTGTGGGGAAAATGGAGCTTATGGTAGGAAAGCCAGTACACAGTGTACGAGGGGGGTTTGGGGGGGGAGCAATGCAAGAAAGCGCACTATATTTTGTCCTTACCTGATAGTAGTGAATATAACGAAGATGCGAAGATGCGAAGAAGCAAATGATGATATGGTGGGGCTGACTTTGTCACACAAAAAGCAAAACGCTGCAAATGTTGCGTGAGCGTGTGTGTGTGTACCGTTGATGTTTTTATTTTCTTTAATTTATTATTATACACACCAACTCTCTTCTCTTAAGCAGTTAGTGGAGTTAGGATGGCATGTGACCCACGCTGCTCGGGGGGCGTCTCTTTCATCCCGTTGTTGCGT]

[+] EMBL BM649790             [CCGCGGACGCGTGGGCGCGACGATACAGCTGGCGGAGCCGGGGCTGCGGTACGAGTGCGTGATGGCGAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGCGAGGACGGCTTCCTGTACATTTACAGCTTCGAGGACTCGAAGGGTGGCGAATGTAAGCTCATTCGTGCGCACGATCTCCGTACGCCACTGCACGGCATTACCGAAGTTGACATCGTCGGCAATGAGAACGATGAAAACACAAACAGCCTGAACGTGAACATGACGAAGTCGATGCTGCCGGCGCCGGGCACGTACGCTGGCGTTCTGAAGGGACGTCCGGCCGACCGGATGTCAGACTCCGACTGGTGCCACGATTTGCGCGAGGCGGTCGAGTATCCGGTCAAGGTGACGGTGCCGATCTACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCACGGCAGCGCAGCAGCACCCCC GGGAAGGAGGTGATCATCAACAGCACCACCACCACCATCATCACCACCACCATCCGCCCACCAAGATGCGACCCACTGGCAAATCGTTCCCCTCGAAGGCAGCAGCCGGCGTTGGCTGCAAGGGTTGAAGGTGTGGGGAAAATGGAGCTTATGGTAGGAAAGCCAGTACACAGTGTACGAGGGGGGTTTGGGGGGGGAGCAA                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM628898             [             ccgGCGACGATACAGCTGGCGGAGCCGGGGCTGCGGTACGAGTGCGTGATGGCGAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGCGAGGACGGCTTCCTGTACATTTACAGCTTCGAGGACTCGAAGGGTGGCGAATGTAAGCTCATTCGTGCGCACGATCTCCGTACGCCACTGCACGGCATTACCGAAGTTGACATCGTCGGCAATGAGAACGATGAAAACACAAACAGCCTGAACGTGAACATGACGAAGTCGATGCTGCCGGCGCCGGGCACGTACGCTGGCGTTCTGAAGGGACGTCCGGCCGACCGGATGTCAGACTCCGACTGGTGCCACGATTTGCGCGAGGCGGTCGAGTATCCGGTCAAGGTGACGGTGCCGATCTACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCACGGCAGCGCAGCAGCACCCCCGGGGAAGGAGGTGATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM649770             [                                                                                                                                                                                                                                        ccgGAAAACACAAACAGCCTGAACGTGAACATGACGAAGTCGATGCTGCCGGCGCCGGGCACGTACGCTGGCGTTCTGAAGGGACGTCCGGCCGACCGGATGTCAGACTCCGACTGGTGCCACGATTTGCGCGAGGCGGTCGAGTATCCGGTCAAGGTGACGGTGCCGATCTACCACGAGATGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM595039             [                                                                                                                                                                                                                                                                                                                                                                                      ccgATCCGGTCAAGGTGACGGTGCCGATCTACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCACGGCAGCGCAGCAGCACCCCC GGGAAGGAGGTGATCATCAACAGCACCACCACCACCATCATCACCACCACCATCCGCCCACCAAGATGCGACCCACTGGCAAATCGTTCCCCTCGAAGGCAGCAGCCGGCGTTGGCTGCAAGGGTTGAAGGTGTGGGGAAAATGGAGCTTATGGTAGGAAAGCCAGTACACAGTGTACGAGGGGG  TT GGGGGGGAGCAATGCAAGAAAGCGCACTATATTTTGTCCTTACCTGATAGTAGTGAATATAACGAAGATGCGAAGATGCGAAGAAGCAAATGATGATATGGTGGGGCTGACTTTGTCACACAAAAAGCAAAACGCTGCAAATGTTGCGTGAGCGTGTGTGTGTGTACCGTTGATGTTTTTATTTTCTTTAATTTATTATTATACACACCAACTCTCTTCTCTTAAGCAGTTAGTGGAGTTAGGATGGCATGTGACCCACGCTGCTCGGGGGGCGTCTCTTTCATCCCGTTGTTGCGT]




>consensus_6619#0
CCGCGGACGCGTGGGCGCGACGATACAGCTGGCGGAGCCGGGGCTGCGGTACGAGTGCGT
GATGGCGAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGCGAGGACGGCTTCCTGTA
CATTTACAGCTTCGAGGACTCGAAGGGTGGCGAATGTAAGCTCATTCGTGCGCACGATCT
CCGTACGCCACTGCACGGCATTACCGAAGTTGACATCGTCGGCAATGAGAACGATGAAAA
CACAAACAGCCTGAACGTGAACATGACGAAGTCGATGCTGCCGGCGCCGGGCACGTACGC
TGGCGTTCTGAAGGGACGTCCGGCCGACCGGATGTCAGACTCCGACTGGTGCCACGATTT
GCGCGAGGCGGTCGAGTATCCGGTCAAGGTGACGGTGCCGATCTACGACGAGATGCAGTT
CCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCACGGCAGCGCAGCAGCA
CCCCCGGGAAGGAGGTGATCATCAACAGCACCACCACCACCATCATCACCACCACCATCC
GCCCACCAAGATGCGACCCACTGGCAAATCGTTCCCCTCGAAGGCAGCAGCCGGCGTTGG
CTGCAAGGGTTGAAGGTGTGGGGAAAATGGAGCTTATGGTAGGAAAGCCAGTACACAGTG
TACGAGGGGGGTTTGGGGGGGGAGCAATGCAAGAAAGCGCACTATATTTTGTCCTTACCT
GATAGTAGTGAATATAACGAAGATGCGAAGATGCGAAGAAGCAAATGATGATATGGTGGG
GCTGACTTTGTCACACAAAAAGCAAAACGCTGCAAATGTTGCGTGAGCGTGTGTGTGTGT
ACCGTTGATGTTTTTATTTTCTTTAATTTATTATTATACACACCAACTCTCTTCTCTTAA
GCAGTTAGTGGAGTTAGGATGGCATGTGACCCACGCTGCTCGGGGGGCGTCTCTTTCATC
CCGTTGTTGCGT

consensusID : consensus_6619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [GCAGAATCCCCCGAGGTTAAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGTGAGGACGGCTTCCTGTACATTTACAGCTTCGAGGACTCGAAGTGGTGGCGAATGTAAGCTCATTCGTGCGCACGATCTCCGTACGCCACTGCACGGCATTACCGAAGTTTGACATCGTCGGCAATGAGAACTGATGAAAACACAAACCAGCCTGAACGTGAACATGACGAAGTCGATGCTTGCCGGCGCCTGGGCACGTAACGGCTTGGCGTTCTTGAAGGGACGGTCCGGCCGACGGATGTCAGACTCCGACTGGTTGCCAACGATTTTGCGCGAGGCGGTCGAGTATCCTGGTCAAGGTTGACGGTGCGATCTACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCCACGTGAAGCGCAGCAGACCCCCGGGGAAGGAGGTGATCATCAAACAGGGACAACAACAACACCACCACATCCGCCCACGAAGGATGCGACCCACTGGCACATCGTTCCCCTCGAAGGCAGCAGCCGGCGTNGGCTTGCCAGGGTTGNAGGTTGTGGG]

[+] EMBL AL695684             [GCAGAATCCCCCGAGGTTAAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGTGAGGACGGCTTCCTGTACATTTACAGCTTCGAGGACTCGAAGTGGTGGCGAATGTAAGCTCATTCGTGCGCACGATCTCCGTACGCCACTGCACGGCATTACCGAAGTTTGACATCGTCGGCAATGAGAACTGATGAAAACACAAACCAGCCTGAACGTGAACATGACGAAGTCGATGCTTGCCGGCGCCTGGGCACGTAACGGCTTGGCGTTCTTGAAGGGACGGTCCGGCCGACGGATGTCAGACTCCGACTGGTTGCCAACGATTTTGCGCGAGGCGGTCGAGTATCCTGGTCAAGGTTGACGGTGCGATCTACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCCACGTGAAGCGCAGCAGACCCCCGGGGAAGGAGGTGATCATCAAACAGGGACAACAACAACACCACCACATCCGCCCACGAAGGATGCGACCCACTGGCACATCGTTCCCCTCGAAGGCAGCAGCCGGCGTNGGCTTGCCAGGGTTGNAGGTTGTGGG]




>consensus_6619#1
GCAGAATCCCCCGAGGTTAAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGTGAGGA
CGGCTTCCTGTACATTTACAGCTTCGAGGACTCGAAGTGGTGGCGAATGTAAGCTCATTC
GTGCGCACGATCTCCGTACGCCACTGCACGGCATTACCGAAGTTTGACATCGTCGGCAAT
GAGAACTGATGAAAACACAAACCAGCCTGAACGTGAACATGACGAAGTCGATGCTTGCCG
GCGCCTGGGCACGTAACGGCTTGGCGTTCTTGAAGGGACGGTCCGGCCGACGGATGTCAG
ACTCCGACTGGTTGCCAACGATTTTGCGCGAGGCGGTCGAGTATCCTGGTCAAGGTTGAC
GGTGCGATCTACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTA
GGCAAGGGCCACGTGAAGCGCAGCAGACCCCCGGGGAAGGAGGTGATCATCAAACAGGGA
CAACAACAACACCACCACATCCGCCCACGAAGGATGCGACCCACTGGCACATCGTTCCCC
TCGAAGGCAGCAGCCGGCGTNGGCTTGCCAGGGTTGNAGGTTGTGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6619#0      CCGCGGACGCGTGGGCGCGACGATACAGCTGGCGGAGCCGGGGCTGCGGTACGAGTGCGT 60
consensus_6619#1      ------------------------------------------------GCAGAATCCCCC 12
                                                                      * *  *   *  

consensus_6619#0      GATGGCGAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGCGAGGACGGCTTCCTGTA 120
consensus_6619#1      GAGGTTAAAGCTGGAGAAGGAGACGCGCCTGCTGCTGGCCTGTGAGGACGGCTTCCTGTA 72
                      ** *   *********************************** *****************

consensus_6619#0      CATTTACAGCTTCGAGGACTCGAAG-GGTGGCGAATGTAAGCTCATTCGTGCGCACGATC 179
consensus_6619#1      CATTTACAGCTTCGAGGACTCGAAGTGGTGGCGAATGTAAGCTCATTCGTGCGCACGATC 132
                      ************************* **********************************

consensus_6619#0      TCCGTACGCCACTGCACGGCATTACCGAAGTT-GACATCGTCGGCAATGAGAAC-GATGA 237
consensus_6619#1      TCCGTACGCCACTGCACGGCATTACCGAAGTTTGACATCGTCGGCAATGAGAACTGATGA 192
                      ******************************** ********************* *****

consensus_6619#0      AAACACAAAC-AGCCTGAACGTGAACATGACGAAGTCGATGCT-GCCGGCGCC-GGGCAC 294
consensus_6619#1      AAACACAAACCAGCCTGAACGTGAACATGACGAAGTCGATGCTTGCCGGCGCCTGGGCAC 252
                      ********** ******************************** ********* ******

consensus_6619#0      GTA-CG--CTGGCGTTCT-GAAGGGACG-TCCGGCCGACCGGATGTCAGACTCCGACTGG 349
consensus_6619#1      GTAACGGCTTGGCGTTCTTGAAGGGACGGTCCGGCCGAC-GGATGTCAGACTCCGACTGG 311
                      *** **   ********* ********* ********** ********************

consensus_6619#0      T-GCCA-CGATTT-GCGCGAGGCGGTCGAGTATCC-GGTCAAGGT-GACGGTGCCGATCT 404
consensus_6619#1      TTGCCAACGATTTTGCGCGAGGCGGTCGAGTATCCTGGTCAAGGTTGACGGTGC-GATCT 370
                      * **** ****** ********************* ********* ******** *****

consensus_6619#0      ACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGC- 463
consensus_6619#1      ACGACGAGATGCAGTTCCCCCCGGTGACGCCGATCACCGTCGAGTGACTAGGCAAGGGCC 430
                      *********************************************************** 

consensus_6619#0      ACG-GCAGCGCAGCAGCACCCCCGGGAAGGAGGTGATCATCAACAGCACCACCACCACCA 522
consensus_6619#1      ACGTGAAGCGCAGCAGACCCCCGGGGAAGGAGGTGATCATCAAA-----CAGGGACAACA 485
                      *** * **********  **** ********************      **    ** **

consensus_6619#0      TCATCACCACCACCATCCGCCCACCAAG-ATGCGACCCACTGGCAAATCGTTCCCCTCGA 581
consensus_6619#1      ACAACACCACCAC-ATCCGCCCACGAAGGATGCGACCCACTGGCACATCGTTCCCCTCGA 544
                       ** ********* ********** *** **************** **************

consensus_6619#0      AGGCAGCAGCCGGCGTTGGCT-GCAAGGGTTGAAGGT-GTGGGGAAAATGGAGCTTATGG 639
consensus_6619#1      AGGCAGCAGCCGGCGTNGGCTTGCCAGGGTTGNAGGTTGTGGG----------------- 587
                      **************** **** ** ******* **** *****                 

consensus_6619#0      TAGGAAAGCCAGTACACAGTGTACGAGGGGGGTTTGGGGGGGGAGCAATGCAAGAAAGCG 699
consensus_6619#1      ------------------------------------------------------------
                                                                                  

consensus_6619#0      CACTATATTTTGTCCTTACCTGATAGTAGTGAATATAACGAAGATGCGAAGATGCGAAGA 759
consensus_6619#1      ------------------------------------------------------------
                                                                                  

consensus_6619#0      AGCAAATGATGATATGGTGGGGCTGACTTTGTCACACAAAAAGCAAAACGCTGCAAATGT 819
consensus_6619#1      ------------------------------------------------------------
                                                                                  

consensus_6619#0      TGCGTGAGCGTGTGTGTGTGTACCGTTGATGTTTTTATTTTCTTTAATTTATTATTATAC 879
consensus_6619#1      ------------------------------------------------------------
                                                                                  

consensus_6619#0      ACACCAACTCTCTTCTCTTAAGCAGTTAGTGGAGTTAGGATGGCATGTGACCCACGCTGC 939
consensus_6619#1      ------------------------------------------------------------
                                                                                  

consensus_6619#0      TCGGGGGGCGTCTCTTTCATCCCGTTGTTGCGT 972
consensus_6619#1      ---------------------------------