cluster # 6624

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Anopheles gambiae
cluster # 6624 cluster # 6624 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6624#0 length = 1241 sequences # 4

consensus_6624#1 length = 598 sequences # 1

consensusID : consensus_6624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1241
fasta sequence

                              [TCAGTGTGTGAGTGAGTGAGTCGCGGAGGTGAACTGTAAATGTATAAATGTTAAGTTTCTACTTCATAATAATAAAAATAATATTTAAATTTAATGGCATGCCCCCTGCAGTGAGGAAATGGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCAAAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACCATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTAGCACGCGAAAGTGAACAAACAGACACAAAAACAAACGATCACGAACAAAAACCAAACAACAGACATACAGAGTTACAAAGAAAAGGGTAAAAAACAGAACAGAAACAATGAGAAACAAACCACAAACTACAAACTGAAATGGTTTTCTTTTGACAACATATTTTATCCCATGGAGCAGGAGGAAGCCGATGGAAAGAAGTAAACGAAACAAGAACATAAATCAAATAATCTCTCTGTATAAATCAAAACAACAAACAAACCAAAACACAAATAAATCTAACAAAAACTACAACAATCATCACTTGTGGAGAGTGTG]

[+] EMBL BX610301             [TCAGTGTGTGAGTGAGTGAGTCGCGGAGGTGAACTGTAAATGTATAAATGTTAAGTTTCTACTTCATAATAATAAAAATAATATTTAAATTTAATGGCATGCCCCCTGCAGTGAGGAAATGGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCAAAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGGAAATAATAGATATAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM651542             [                                                                                        ccgTAATGGCATGCCCCCTGCAGTGAGGAAATGGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCAAAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX625419             [                                                                                                                                                                                           CGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATGCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACCATCGATCGAAGGAGACAGAACAT                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX612974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTAGCACGCGAAAGTGAACAAACAGACACAAAAACAAACGATCACGAACAAAAACCAAACAACAGACATACAGAGTTACAAAGAAAAGGGTAAAAAACAGAACAGAAACAATGAGAAACAAACCACAAACTACAAACTGAAATGGTTTTCTTTTGACAACATATTTTATCCCATGGAGCAGGAGGAAGCCGATGGAAAGAAGTAAACGAAACAAGAACATAAATCAAATAATCTCTCTGTATAAATCAAAACAACAAACAAACCAAAACACAAATAAATCTAACAAAAACTACAACAATCATCACTTGTGGAGAGTGTG]




>consensus_6624#0
TCAGTGTGTGAGTGAGTGAGTCGCGGAGGTGAACTGTAAATGTATAAATGTTAAGTTTCT
ACTTCATAATAATAAAAATAATATTTAAATTTAATGGCATGCCCCCTGCAGTGAGGAAAT
GGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCA
AAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAG
AATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCC
CAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATT
TCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTA
CAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGA
TCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATG
AACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAG
AAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAG
GAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAA
CCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAG
AGGCACTAGAAGCACCATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCA
ATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACA
AGCAAACTTGCTAACGGTGGCTCTAGCACGCGAAAGTGAACAAACAGACACAAAAACAAA
CGATCACGAACAAAAACCAAACAACAGACATACAGAGTTACAAAGAAAAGGGTAAAAAAC
AGAACAGAAACAATGAGAAACAAACCACAAACTACAAACTGAAATGGTTTTCTTTTGACA
ACATATTTTATCCCATGGAGCAGGAGGAAGCCGATGGAAAGAAGTAAACGAAACAAGAAC
ATAAATCAAATAATCTCTCTGTATAAATCAAAACAACAAACAAACCAAAACACAAATAAA
TCTAACAAAAACTACAACAATCATCACTTGTGGAGAGTGTG

consensusID : consensus_6624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [ACCGTTGTAAGATATGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTATCACGCGAAAGTGAACAAACAGACACAAAAACAAACAACCACAACAAAAACAACGACAACAAAAAATAAATAATAAACTGCAGCAAACGACACAC]

[+] EMBL BX608457             [ACCGTTGTAAGATATGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTATCACGCGAAAGTGAACAAACAGACACAAAAACAAACAACCACAACAAAAACAACGACAACAAAAAATAAATAATAAACTGCAGCAAACGACACAC]




>consensus_6624#1
ACCGTTGTAAGATATGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATC
GATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAA
CACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAA
ACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGA
AGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACC
CTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAG
GCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAAT
TGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAG
CAAACTTGCTAACGGTGGCTCTATCACGCGAAAGTGAACAAACAGACACAAAAACAAACA
ACCACAACAAAAACAACGACAACAAAAAATAAATAATAAACTGCAGCAAACGACACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6624#0      TCAGTGTGTGAGTGAGTGAGTCGCGGAGGTGAACTGTAAATGTATAAATGTTAAGTTTCT 60
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      ACTTCATAATAATAAAAATAATATTTAAATTTAATGGCATGCCCCCTGCAGTGAGGAAAT 120
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      GGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCA 180
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      AAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAG 240
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      AATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCC 300
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      CAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATT 360
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      TCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTA 420
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      CAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGA 480
consensus_6624#1      --ACCGTTGTAAGATATGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGA 58
                        ************** *******************************************

consensus_6624#0      TCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATG 540
consensus_6624#1      TCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATG 118
                      ************************************************************

consensus_6624#0      AACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAG 600
consensus_6624#1      AACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAG 178
                      ************************************************************

consensus_6624#0      AAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAG 660
consensus_6624#1      AAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAG 238
                      ************************************************************

consensus_6624#0      GAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAA 720
consensus_6624#1      GAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAA 298
                      ************************************************************

consensus_6624#0      CCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAG 780
consensus_6624#1      CCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAG 358
                      ************************************************************

consensus_6624#0      AGGCACTAGAAGCACCATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCA 840
consensus_6624#1      AGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCA 418
                      *************** ********************************************

consensus_6624#0      ATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACA 900
consensus_6624#1      ATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACA 478
                      ************************************************************

consensus_6624#0      AGCAAACTTGCTAACGGTGGCTCTAGCACGCGAAAGTGAACAAACAGACACAAAAACAAA 960
consensus_6624#1      AGCAAACTTGCTAACGGTGGCTCTATCACGCGAAAGTGAACAAACAGACACAAAAACAAA 538
                      ************************* **********************************

consensus_6624#0      CGATCACGAACAAAAACCAAACAACAGACATACAGAGTTACAAAGAAAAGGGTAAAAAAC 1020
consensus_6624#1      CAACCAC-AACAAAAAC--AACGACA-ACA---AAAAATAAATAATAAACTGCAGCAAAC 591
                      * * *** *********  *** *** ***   * *  ** * *  ***  * *  ****

consensus_6624#0      AGAACAGAAACAATGAGAAACAAACCACAAACTACAAACTGAAATGGTTTTCTTTTGACA 1080
consensus_6624#1      GACACAC----------------------------------------------------- 598
                         ***                                                      

consensus_6624#0      ACATATTTTATCCCATGGAGCAGGAGGAAGCCGATGGAAAGAAGTAAACGAAACAAGAAC 1140
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      ATAAATCAAATAATCTCTCTGTATAAATCAAAACAACAAACAAACCAAAACACAAATAAA 1200
consensus_6624#1      ------------------------------------------------------------
                                                                                  

consensus_6624#0      TCTAACAAAAACTACAACAATCATCACTTGTGGAGAGTGTG 1241
consensus_6624#1      -----------------------------------------