These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence [CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCGTCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACACTGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCATATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT] [+] EMBL BM632350 [CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCGTCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACACTGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAA ] [+] EMBL BM621394 [ ccgATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCATATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT] [+] EMBL BM579582 [ ccgCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCGGAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAA ] consensusID : consensus_6626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAGCCTATTGGCTTTTGCAGTGGCAAACAGTGTGCGCGTATGTAACGTGCTGTAACACGGCCTACT] [+] EMBL BM635541 [CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAGCCTATTGGCTTTTGCAGTGGCAAACAGTGTGCGCGTATGTAACGTGCTGTAACACGGCCTACT] consensusID : consensus_6626#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [GATCGCCGAGGGTTTGTACACTGCACATACAATTAGTCAGTGATCACGCTCTGCTGGAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAGAAAAAAAACAAACCAAGTGCANAAAGGGTATTAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCAT] [+] EMBL AL930883 [GATCGCCGAGGGTTTGTACACTGCACATACAATTAGTCAGTGATCACGCTCTGCTGGAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAGAAAAAAAACAAACCAAGTGCANAAAGGGTATTAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6626#1 ------------------------------------------------------------ consensus_6626#2 ------------------------------------------------------------ consensus_6626#0 CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCG 60 consensus_6626#1 ------------------------------------------------------------ consensus_6626#2 ------------------------------------------------------------ consensus_6626#0 TCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACAC 120 consensus_6626#1 --CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGT 58 consensus_6626#2 ------------------------------------------GATCGCCGAGGGTT-TGT 17 consensus_6626#0 TGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGT 180 * * ** ** *** consensus_6626#1 ACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACA 118 consensus_6626#2 AC-ACTGCACA-TACAATTAGTCAGTGATCA-CGCTC-TGCTGGAA-GGTGTGTGACACA 72 consensus_6626#0 ACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACA 240 ** ******** ******************* ***** ******** ************* consensus_6626#1 ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAA 178 consensus_6626#2 ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAA-GAAAAAAAACAAACC-AAGTGCAN 130 consensus_6626#0 ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAA 300 *********************************** *************** ******* consensus_6626#1 AAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCA 238 consensus_6626#2 AAAGGGTATTAAA-TATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCA 189 consensus_6626#0 AAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCA 360 ******* * *** **** **** *********************** ************ consensus_6626#1 CGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGA 298 consensus_6626#2 CGTGGTCGGCC-ACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGA 248 consensus_6626#0 CGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGA 420 ********** ************************** ********************* consensus_6626#1 AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 358 consensus_6626#2 AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 308 consensus_6626#0 AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 480 ************************************************************ consensus_6626#1 TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 418 consensus_6626#2 TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 368 consensus_6626#0 TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 540 ************************************************************ consensus_6626#1 ACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAA-GAAAGTGG 477 consensus_6626#2 ACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGG 428 consensus_6626#0 ACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAA-GAAAGTGG 599 ******************************* **** ** ****** ** ******** consensus_6626#1 -CACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAA-CGAAA 535 consensus_6626#2 GCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAA-CGAAA 487 consensus_6626#0 -CACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAA 658 **** ************************************************ ***** consensus_6626#1 AAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTC 595 consensus_6626#2 AAACATAAATCCAAGAACCATCGTCAT--------------------------------- 514 consensus_6626#0 AAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTC 718 *************************** consensus_6626#1 TCTCGATTGATACAGCCAACAGCCTAT---TGGCTTTTGCAGTGGCAAACAGTGTGCGCG 652 consensus_6626#2 ------------------------------------------------------------ consensus_6626#0 TCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCA 778 consensus_6626#1 TATGTAACGTGCTGTAACACGGCCTACT---------------------------- 680 consensus_6626#2 -------------------------------------------------------- consensus_6626#0 TATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT 834 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||