cluster # 6632

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Anopheles gambiae
cluster # 6632 cluster # 6632 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6632#0 length = 738 sequences # 4

consensus_6632#1 length = 105 sequences # 1

consensusID : consensus_6632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 738
fasta sequence

                              [CGCTAGATTGTAGGAATCGTGTATTTCGATTTTTTATAGAGCGTTTCTCGCCCATGATATGCCGATATGCTAGTAATACACAGCGCGATATATATTATTAAAGGAATCCGATTTTACTGAACTGAAGAAAAAAAAACGAACAGTCCCTTCCTTCGAAAGGTTTTATAAGAAGTAGCGATTCCAATTGTTTTTTCAACACAGATCGATTTCAAGTAATTAGAAAGAGCTTTATAGAAAAAGATACATATATGTAGAGAGATAACTAACTACACAGAGCATCACAATGTTTGTGTGTGTGTGTTTTTTAAACCCTTCTGAATCACATAATCAAAACTACAGATCAAATACTTTTGATTGCTTCAAAACCAACAAGCACACAGAGCCCAAGAATCTCAGCAAGAACCAAGCACATACAACAGTACAGACAGTTCCGTAGTGATGCGTTTTTAATCGTTTTTTACCGAATTTAGTGCTCAAAGACGTAACGAATGTGGCAAACGAAGACGGGGGGGGAAGGAGAGAAGTTAATAGACGAAAAAGAGAGATATCTTCCACAAGCGTTTCGTTTGTGCGAACCGTTTGAAAGTAGCGAGCGAGTGAGCGTCGATAGATCGTTTTACCAGTAAAAGTAAAATACGAAACAACCCAGTCAAACAACACCACGCGC-GCTATTGATATTAAGCGTTTTTATCTAGTTTTTAATCAACTTCTATTTCCGATCTATGACAAATCGCAAAG]

[+] EMBL BX611816             [CGCTAGATTGTAGGAATCGTGTATTTCGATTTTTTATAGAGCGTTTCTCGCCCATGATATGCCGATATGCTAGTAATACACAGCGCGATATATATTATTAAAGGAATCCGATTTTACTGAACTGAAGAAAAAAAAACGAACAGTCCCTTCCTTCGAAAGGTTTTATAAGAAGTAGCGATTCCAATTGTTTTTTCAACACAGATCGATTTCAAGTAATTAGAAAGAGCTTTATAGAAAAAGATACATATATGTAGAGAGATAACTAACTACACAGAGCATCACAATGTTTGTGTGTGTGTGTTTTTTAAACCCTTCTGAATCACATAATCAAAACTACAGATCAAATACTTTTGATTGCTTCAAAACCAACAAGCACACAGAGCCCAAGAATCTCAGCAAGAACCAAGCACATACAACAGTACAGACAGTTCCGTAGTGATGCGTTTTTAATCGTTTTTTACCGAATTTAGTGCTCAAAGACGTAACGAATGTGGCAAACGAAGACGGGGGGGGAAGGAGAGAAGTTAATAGACGAAAAAGAGAGATATCTTCCACAAGCGTTTCGTTTGTGCGAACCGTTTGAAAGTAGCGAGCGAGTGAGCGTCGATAGATCGTTTTACCAGTAAAAGTAAAATACGAAACAACCCA                                                                                           ]
[+] EMBL BX612029             [      ATTGTAGGAATCGTGTATTTCGATTTTTTATAGAGCGTTTCTCGCCCATGATATGCCGATATGCTAGTAATACACAGCGCGATATATATTATTAAAGGAATCCGATTTTACTGAACTGAAGAAAAAAAAACGAACAGTCCCTTCCTTCGAAAGGTTTTATAAGAAGTAGCGATTCCAATTGTTTTTTCAACACAGATCGATTTCAAGTAATTAGAAAGAGCTTTATAGAAAAAGATACATATATGTAGAGAGATAACTAACTACACAGAGCATCACAATGTTTGTGTGTGTGTGTTTTTTAAACCCTTCTGAATCACATAATCAAAACTACAGATCAAATACTTTTGATTGCTTCAAAACCAACAAGCACACAGAGCCCAAGAATCTCAGCAAGAACCAAGCACATACAACAGTACAGACAGTTCCGTAGTGATGCGTTTTTAATCGTTTTTTACCGAATTTAGTGCTCAAAGACGTAACGAATGTGGCAAACGAAGACGGGGGGGGAAGGAGAGAAGTTAATAGACGAAAAAGAGAGATATCTTCCACAAGCGTTTCGTTTGTGCGAACCGTTTGAAAGTAGCGAGCGAGTGAGCGTCGATAGATCGTTTTACCAGTAAAAGTAAAATACGAAACAACCCAGTCAAACAACACCACGCGC GCTATTGATATTAAGCGTTTTTATCTAGTTTTTAATCAACTTCTATTTCCGATCTATGACA          ]
[+] EMBL BX607903             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTACCGAATTTAGTGCTCAAAGACGTAACGAATGTGGCAAACGAAGAC GGGGGGGAAGGAGAGAAGTTAATAGACGAAAAAGAGAGATATCTTCCACAAGCGTTTCGTTTGTGCGAACCGTTTGAAAGTAGCGAGCGAGTGAGCGTCGATAGATCGTTTTACCAGTAAAATTAAAATACGAAACAACCCAGTCAAACAACACCACGCGCGGCTATTGATATTAAGCGTTTTTATCTAGTTTTTAATCAACTTCTATTTCCGATCTATGACA          ]
[+] EMBL BM646229             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccgAGCGAGTGAGTGAGCGTCGATAGATCGTTTTACCAGTAAAAGTAAAATACGAAACAACCCAGTCAAACAACACCACGCGC GCTATTGATATTAAGCGTTTTTATCTAGTTTTTAATCAACTTCTATTTCCGATCTATAACAAATCGCAAAG]




>consensus_6632#0
CGCTAGATTGTAGGAATCGTGTATTTCGATTTTTTATAGAGCGTTTCTCGCCCATGATAT
GCCGATATGCTAGTAATACACAGCGCGATATATATTATTAAAGGAATCCGATTTTACTGA
ACTGAAGAAAAAAAAACGAACAGTCCCTTCCTTCGAAAGGTTTTATAAGAAGTAGCGATT
CCAATTGTTTTTTCAACACAGATCGATTTCAAGTAATTAGAAAGAGCTTTATAGAAAAAG
ATACATATATGTAGAGAGATAACTAACTACACAGAGCATCACAATGTTTGTGTGTGTGTG
TTTTTTAAACCCTTCTGAATCACATAATCAAAACTACAGATCAAATACTTTTGATTGCTT
CAAAACCAACAAGCACACAGAGCCCAAGAATCTCAGCAAGAACCAAGCACATACAACAGT
ACAGACAGTTCCGTAGTGATGCGTTTTTAATCGTTTTTTACCGAATTTAGTGCTCAAAGA
CGTAACGAATGTGGCAAACGAAGACGGGGGGGGAAGGAGAGAAGTTAATAGACGAAAAAG
AGAGATATCTTCCACAAGCGTTTCGTTTGTGCGAACCGTTTGAAAGTAGCGAGCGAGTGA
GCGTCGATAGATCGTTTTACCAGTAAAAGTAAAATACGAAACAACCCAGTCAAACAACAC
CACGCGCGCTATTGATATTAAGCGTTTTTATCTAGTTTTTAATCAACTTCTATTTCCGAT
CTATGACAAATCGCAAAG

consensusID : consensus_6632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 105
fasta sequence

                              [CGTAACGAAGGGGGCAAACGAAGACGGGGGGGAAGGAGAGAAGTTAAGAGACGAAAAAGAGAGAAAACTTCCACAAGCGGTGCGGTGGGGCGAACCGACAGAAAG]

[+] EMBL BX611507             [CGTAACGAAGGGGGCAAACGAAGACGGGGGGGAAGGAGAGAAGTTAAGAGACGAAAAAGAGAGAAAACTTCCACAAGCGGTGCGGTGGGGCGAACCGACAGAAAG]




>consensus_6632#1
CGTAACGAAGGGGGCAAACGAAGACGGGGGGGAAGGAGAGAAGTTAAGAGACGAAAAAGA
GAGAAAACTTCCACAAGCGGTGCGGTGGGGCGAACCGACAGAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6632#0      CGCTAGATTGTAGGAATCGTGTATTTCGATTTTTTATAGAGCGTTTCTCGCCCATGATAT 60
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      GCCGATATGCTAGTAATACACAGCGCGATATATATTATTAAAGGAATCCGATTTTACTGA 120
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      ACTGAAGAAAAAAAAACGAACAGTCCCTTCCTTCGAAAGGTTTTATAAGAAGTAGCGATT 180
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      CCAATTGTTTTTTCAACACAGATCGATTTCAAGTAATTAGAAAGAGCTTTATAGAAAAAG 240
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      ATACATATATGTAGAGAGATAACTAACTACACAGAGCATCACAATGTTTGTGTGTGTGTG 300
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      TTTTTTAAACCCTTCTGAATCACATAATCAAAACTACAGATCAAATACTTTTGATTGCTT 360
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      CAAAACCAACAAGCACACAGAGCCCAAGAATCTCAGCAAGAACCAAGCACATACAACAGT 420
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      ACAGACAGTTCCGTAGTGATGCGTTTTTAATCGTTTTTTACCGAATTTAGTGCTCAAAGA 480
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      CGTAACGAATGTGGCAAACGAAGACGGGGGGGGAAGGAGAGAAGTTAATAGACGAAAAAG 540
consensus_6632#1      CGTAACGAAGGGGGCAAACGAAGACGGGGGGG-AAGGAGAGAAGTTAAGAGACGAAAAAG 59
                      ********* * ******************** *************** ***********

consensus_6632#0      AGAGATATCTTCCACAAGCGTTTCGTTTGTGCGAACCGTTTGAAAGTAGCGAGCGAGTGA 600
consensus_6632#1      AGAGAAAACTTCCACAAGCGGTGCGGTGGGGCGAACCGACAGAAAG-------------- 105
                      ***** * ************ * ** * * ********   *****              

consensus_6632#0      GCGTCGATAGATCGTTTTACCAGTAAAAGTAAAATACGAAACAACCCAGTCAAACAACAC 660
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      CACGCGCGCTATTGATATTAAGCGTTTTTATCTAGTTTTTAATCAACTTCTATTTCCGAT 720
consensus_6632#1      ------------------------------------------------------------
                                                                                  

consensus_6632#0      CTATGACAAATCGCAAAG 738
consensus_6632#1      ------------------