cluster # 6641

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6641 cluster # 6641 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6641#0 length = 1055 sequences # 4

consensus_6641#1 length = 659 sequences # 1

consensusID : consensus_6641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1055
fasta sequence

                              [CCGGGCAGGCTACAGCTTCCAGGACTGTCCAGTCTATCCCGGCTGCAACTACTCACTGCTCAGCTGTCGCTACATGGAGTTCCTGAAGAATAGGAGCGTAGTATTGGAGCTCTTTTCTTCCGAAAGTGACGCGTTACAGCAAGTCAGCAGGGGCAACGCATGGGGCGCACTGGTGTTTGCTTCCAACTACTCCGACTCGCTAGTGGAGCGTACCGAACGAGGTCGCGATGTAGACGATTTCACCATAGACTCAGCCAATCTGGCCGTGACGATGGATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACCCGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTAGTATACTGTTGCTCAAGTTCAAGAANGGATAAGCTGCGCCGCTTGCGC]

[+] EMBL BM633453             [CCGGGCAGGCTACAGCTTCCAGGACTGTCCAGTCTATCCCGGCTGCAACTACTCACTGCTCAGCTGTCGCTACATGGAGTTCCTGAAGAATAGGAGCGTAGTATTGGAGCTCTTTTCTTCCGAAAGTGACGCGTTACAGCAAGTCAGCAGGGGCAACGCATGGGGCGCACTGGTGTTTGCTTCCAACTACTCCGACTCGCTAGTGGAGCGTACCGAACGAGGTCGCGATGTAGACGATTTCACCATAGACTCAGCCAATCTGGCCGTGACGATGGATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCATCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTAGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGG                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX621864             [                                                                                                                                                                                                                                                                              GATGGATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACCCGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTAGTATACTGTTGCTCAAGTTCAAGAANGGATAAGCTGCGCCGCTTGCGC]
[+] EMBL BX616498             [                                                                                                                                                                                                                                                                                  GATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGG                                                                                                                             ]
[+] EMBL BM590830             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATCACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACCCGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTAGTATACTGCTGCTCAAGTTCAAGAAGGGATAAGCTGCGCCGCTTGCG ]




>consensus_6641#0
CCGGGCAGGCTACAGCTTCCAGGACTGTCCAGTCTATCCCGGCTGCAACTACTCACTGCT
CAGCTGTCGCTACATGGAGTTCCTGAAGAATAGGAGCGTAGTATTGGAGCTCTTTTCTTC
CGAAAGTGACGCGTTACAGCAAGTCAGCAGGGGCAACGCATGGGGCGCACTGGTGTTTGC
TTCCAACTACTCCGACTCGCTAGTGGAGCGTACCGAACGAGGTCGCGATGTAGACGATTT
CACCATAGACTCAGCCAATCTGGCCGTGACGATGGATATGTCAAATCAACAAATAGGAAC
GCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGA
CTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGG
CGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTT
CTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCT
CGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCAC
CCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTT
CAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCT
GTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCAC
GTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGAT
CGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGAC
CGAATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACCCGAACGTGTACAT
CGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTAGTATACTGTTGCT
CAAGTTCAAGAANGGATAAGCTGCGCCGCTTGCGC

consensusID : consensus_6641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CCGGTGACGACGCACTACATCGAGGAGACGCGCCAGGCGCACGTGATCGGGCTGATGCGCGGCGGCAAGTTTCTGGCCGAGGAGTCGCCGGCCGACCTGCTCGCCCAGTACCAGGCGGAATCGCTCGAGGACGTGTTTCTGAAGCTGTCCGTCCTGCAGAACATGGGCAAGCGGAGACGCTCGTCGATCGCGCAGGAGGTGGTGGAGCACGTGCGCATACCGGCCATCAGCAATCCGGCCCTGGACCTGTCGCCCGAGGAGGACCATGGCGAAATATCCGGCGAGTTCGGCGACAACATCTCGATGTCATCGCGCGGACCGGACGCGGTGACGCCGGAAATACAGGCGCCCCCGTTACCGCCGGAGGAGGACACCAAGACGCCGCTCGTCGAGTACTTGAAGTTCATCAAGCCGAACCATATGCGGGCACTGATCTGGAAAAACTTCCTCTGGATGTGGCGTAACGTCGGTGTGATGGCATTCATCATTGGACTGCCGGTAGCACAGATCATTCTGTTCTGCTGGGCGATCGGGCACGAATCCGGTCGGTTTGAAGCTGGCCGTTGCCAACTACTCCGACTCGCTTAGTGGAGCGTACCGAACGAGGTCGCGATGTGGACGATTTCACCATAGACTCAGCCCAATCTGGCCGTGAACGA]

[+] EMBL BM582914             [CCGGTGACGACGCACTACATCGAGGAGACGCGCCAGGCGCACGTGATCGGGCTGATGCGCGGCGGCAAGTTTCTGGCCGAGGAGTCGCCGGCCGACCTGCTCGCCCAGTACCAGGCGGAATCGCTCGAGGACGTGTTTCTGAAGCTGTCCGTCCTGCAGAACATGGGCAAGCGGAGACGCTCGTCGATCGCGCAGGAGGTGGTGGAGCACGTGCGCATACCGGCCATCAGCAATCCGGCCCTGGACCTGTCGCCCGAGGAGGACCATGGCGAAATATCCGGCGAGTTCGGCGACAACATCTCGATGTCATCGCGCGGACCGGACGCGGTGACGCCGGAAATACAGGCGCCCCCGTTACCGCCGGAGGAGGACACCAAGACGCCGCTCGTCGAGTACTTGAAGTTCATCAAGCCGAACCATATGCGGGCACTGATCTGGAAAAACTTCCTCTGGATGTGGCGTAACGTCGGTGTGATGGCATTCATCATTGGACTGCCGGTAGCACAGATCATTCTGTTCTGCTGGGCGATCGGGCACGAATCCGGTCGGTTTGAAGCTGGCCGTTGCCAACTACTCCGACTCGCTTAGTGGAGCGTACCGAACGAGGTCGCGATGTGGACGATTTCACCATAGACTCAGCCCAATCTGGCCGTGAACGA]




>consensus_6641#1
CCGGTGACGACGCACTACATCGAGGAGACGCGCCAGGCGCACGTGATCGGGCTGATGCGC
GGCGGCAAGTTTCTGGCCGAGGAGTCGCCGGCCGACCTGCTCGCCCAGTACCAGGCGGAA
TCGCTCGAGGACGTGTTTCTGAAGCTGTCCGTCCTGCAGAACATGGGCAAGCGGAGACGC
TCGTCGATCGCGCAGGAGGTGGTGGAGCACGTGCGCATACCGGCCATCAGCAATCCGGCC
CTGGACCTGTCGCCCGAGGAGGACCATGGCGAAATATCCGGCGAGTTCGGCGACAACATC
TCGATGTCATCGCGCGGACCGGACGCGGTGACGCCGGAAATACAGGCGCCCCCGTTACCG
CCGGAGGAGGACACCAAGACGCCGCTCGTCGAGTACTTGAAGTTCATCAAGCCGAACCAT
ATGCGGGCACTGATCTGGAAAAACTTCCTCTGGATGTGGCGTAACGTCGGTGTGATGGCA
TTCATCATTGGACTGCCGGTAGCACAGATCATTCTGTTCTGCTGGGCGATCGGGCACGAA
TCCGGTCGGTTTGAAGCTGGCCGTTGCCAACTACTCCGACTCGCTTAGTGGAGCGTACCG
AACGAGGTCGCGATGTGGACGATTTCACCATAGACTCAGCCCAATCTGGCCGTGAACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6641#0      CCGGGCAGGCTACAGCTTCCAGGACTGTCCAGTCTATCCCGGCTGCAACTACTCACTGCT 60
consensus_6641#1      ------------------------------------------------------------
                                                                                  

consensus_6641#0      CAGCTGTCGCTACATGGAGTTCCTGAAGAATAGGAGCGTAGTATTGGAGCTCTTTTCTTC 120
consensus_6641#1      ------------------------------------------------------------
                                                                                  

consensus_6641#0      CGAAAGTGACGCGTTACAGCAAGTCAGCAGGGGCAACGCATGGGGCGCACTGGTGTTTGC 180
consensus_6641#1      ------------------------------------------------------------
                                                                                  

consensus_6641#0      TTCCAACTACTCCGACTCGCTAGTGGAGCGTACCGAACGAGGTCGCGATGTAGACGATTT 240
consensus_6641#1      --------------------------------------------------CCGGTGACGA 10
                                                                          *  **   

consensus_6641#0      CACCATAGACTCAGCCAATCTGGCCGTGACGATGGATATGTCAAATCAACAAATAGGAAC 300
consensus_6641#1      CGCACTACATCGAGGAGACGCGCCAGGCGCACGTGATCGGGCTGATGCGCGGC--GGCAA 68
                      * *  ** *   **   *   * * *   *    ***  * *  **   *     ** * 

consensus_6641#0      GCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGA 360
consensus_6641#1      GTTTCTG-GCCGAGGAGTC--GCCGGCCGACCT--GCTCGCCCAGTACCAGGCGGAATCG 123
                      * *****  *****   **  *   *** ** *   **    *   * **  * **    

consensus_6641#0      CTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCG--TGTAC 418
consensus_6641#1      CTCGAGGACGTGTTTCTGAAGCTGTC-CGTCCTGCAGAACATGGGCAAGCGGAGACGCTC 182
                      **    *  *      *  * * * * * * *      *   *  *** *      *  *

consensus_6641#0      GGCGATCGGAAGCCGAACTTTACCGACTTTGCG-GCGCCCGGTGTCATTCTCACCATCAT 477
consensus_6641#1      GTCGATCG--CGCAGGAGGTGGTGGAGCACGTGCGCATACCG-GCCATCAGCAATCCGGC 239
                      * ******   ** * *  *    **    * * **   * * * ***   **       

consensus_6641#0      TTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCAT 537
consensus_6641#1      CCTGGACCTGTCGCCCGAGGAGGACCATGGCGAAATATCCGGCGAGTTCGGCGACAACAT 299
                        *   *** **    * *     *   ****  **      ****  *  ***   ***

consensus_6641#0      TCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCAC 597
consensus_6641#1      CTCGATGTCATCGCGCGGACCGGACGCGGTGACGCCGGAAATACAGG-CGCCCCCGTTAC 358
                            *   *  * **   * * *            ******* *  * ***  ** **

consensus_6641#0      CACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGT 657
consensus_6641#1      CGCC--------GGAGGAGGACACCAAGACGCCGCTCGTCGAGTACTTGAAGTTCATCAA 410
                      * **        ** *  *  *  * ****  ********  *   ** *  ***  *  

consensus_6641#0      GTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCAT--CCTGACC 715
consensus_6641#1      GCCGAACCATATGC----GGGCACTGATCTGGAAAAACTTCCTCTGGATGTGGCGTAACG 466
                      *   **** ** *     ****       **       * *  **     *  * * ** 

consensus_6641#0      GGGCTGTG-TGGCATGTGTT-TCGGATTCGTCGTATCGTGC----TCCTGTGATAACGAG 769
consensus_6641#1      TCGGTGTGATGGCATTCATCATTGGACTGCCGGTAGCACAGATCATTCTGTTCTGCTGGG 526
                        * **** ******   *  * *** *    *** *        * ****  *   * *

consensus_6641#0      CGCTCCGCCACGTACATGG-CGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCAT 828
consensus_6641#1      CGATCGGGCACGAATCCGGTCGGTTTGAAGCTGGCCGTTGCCAACTACTCCGACTCGCTT 586
                      ** ** * **** *   ** ** *  * ****  * *  *      *  * *    ** *

consensus_6641#0      CATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCT 888
consensus_6641#1      AGTGGAGCGTACCGA----ACGAGGTCGC-GATGTGGACGATTTCACCATAGACTCAGC- 640
                        *   **  * ***    * *    *** * ** *   * ****    *     * ** 

consensus_6641#0      CACCAAATCGACCG-AATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACC 947
consensus_6641#1      --CCAATCTGGCCGTGAACGA--------------------------------------- 659
                        ****   * ***  * **                                        

consensus_6641#0      CGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTA 1007
consensus_6641#1      ------------------------------------------------------------
                                                                                  

consensus_6641#0      GTATACTGTTGCTCAAGTTCAAGAANGGATAAGCTGCGCCGCTTGCGC 1055
consensus_6641#1      ------------------------------------------------