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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1341 fasta sequence
[CGGGTTCGTGGACGGTTTCTGTTTGGCCGGAAGTGGACCGGGGCTGGTGTAAACATTCGCCAACGACGGCGGTGAAGATGTGCTAAAGTGGAACTGCTCCAGCAAACGCCAGCGGAGGGTAGAATCTTGCGCAAAGTATGCATGTGGCTCGGTGCACGGTGCTGACTCGCTACGGTCGTGTACACTTGGGCTGTTTTTCGGTGTAAATTCGGCGTCTTTCCGGTCGCATGCTAGCGCCGGAAGGTCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTACTCAGCAAATTCCCCCCC-ATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCACACCAAAGCACACACACACACACACACGTACGCACGGCTCCAACAAATACCAGTACCTTCGTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGGACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAACGCTGAGGGGCTCGTTTGGCATCGCTCGTCGCCACCACCGACAGTCGGCCCGATGTCACAGCAGGCGGTGGAAAGTGGTGGTATGAAAATTTCCAACTGCTCGAAACCGTTCGCGTGCACCGAATGCAACAAATTGTTTCGCCAGCTGAGCACACTGACCAACCACATGAAGATACACACGGGCGAAAAACCGTACAAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAAATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTGAGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTGTGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCATTCGGATGATAAATTTTCTTCTCTCTACCCTCCTTCCCATCTAGACAATATTGACCTGATAGGTTCCTAACCTCTGTCTTTAAGGCATAAAACCCTTCGAATGCAGCATCTGTCCGAAGGAGTTCCGGCAGACGACGACCCTAGCGAATCACATAAAAATCCACACAGGTGAAAAGCCGTACGCCTGCACGTACTGCAGCAAAACCTTTCGCCAGACGGGTACGCTTTCGAACCATCTGAAGATTCACACCGGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGTAAGTACAGGGTTTTCAATATTGATTTATTTATCAAACAGTGG]
[+] EMBL BX605069 [CGGGTTCGTGGACGGTTTCTGTTTGGCCGGAAGTGGACCGGGGCTGGTGTAAACATTCGCCAACGACGGCGGTGAAGATGTGCTAAAGTGGAACTGCTCCAGCAAACGCCAGCGGAGGGTAGAATCTTGCGCAAAGTATGCATGTGGCTCGGTGCACGGTGCTGACTCGCTACGGTCGTGTACACTTGGGCTGTTTTTCGGTGTAAATTCGGCGTCTTTCCGGTCGCATGCTAGCGCCGGAAGGTCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTACTCAGCAAATTCCCCCCC ATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCACACCAAAGCACACACACACACACACACGTACGCACGGCTCCAACAAATACCAGTACCTTCGTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGGACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAAC ]
[+] EMBL BM595159 [ ccgCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTACTCAGCAAATTCCCCCCCAATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCACACCAAAGCACACAGACACACACACACGTACGCACGGCTCCAACAAATACCATTACCTTCGTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGGACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAACGCTGAGGGGCTCGTTTGGCATCGCTCGTCGCCACCACCGACAGTCGGCCCGATGTCACAGCAGGCGGTGGAAAGTGGTGGTATGAAAATTTCCAACTGCTCGAAACCGTTCGCGTGCACCGAATGCAACAAATTGTTTCGCCAGCTGAGCACACTGACCAACCACATGAAGATACACACGGGCGAAAAACCGTACAAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAAATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTGAGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTGTGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCA ]
[+] EMBL BM599993 [ ccgCACGGGCGAAAAACCGTACAAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAAATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTGAGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTGTGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCATTCGGATGATAAATTTTCTTCTCTCTACCCTCCTTCCCATCTAGACAATATTGACCTGATAGGTTCCTAACCTCTGTCTTTAAGGCATAAAACCCTTCGAATGCAGCATCTGTCCGAAGGAGTTCCGGCAGACGACGACCCTAGCGAATCACATAAAAATCCACACAGGTGAAAAGCCGTACGCCTGCACGTACTGCAGCAAAACCTTTCGCCAGACGGGTACGCTTTCGAACCATCTGAAGATTCACACCGGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGTAAGTACAGGGTTTTCAATATTGATTTATTTATCAAACAGTGG]
consensusID : consensus_6643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence
[CCGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGCAAACCTTCGCAAACGGAGCCACGGTCCATGGTGGCGCTAAATGGTGGGCTTAATTTAAAGGACGAGGACGTCAAACCCTTCTTTGCCATGATGTAAATTGCTAGCGGCGGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACCGACTCTTCTAGTGTTCGCAGGAACGTCAGCTAATATGTTTAAAAAAAGAGATAAGGAGCGAGAGCGGTACGATTCGCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTGGGTGCGTTGTCGATTGCTTTAAATTATTTTTCACCATGCACCATGCGGTGTCGCGCCGGTCGGAAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAATAAATAGTTGCAATTTAAGTTATAATAACTTTATCGGTTCCGCGCTCGGAATCCATCCCGGGCCAGCAGCAGCATCGTCTTAGTGGCTTCCCAAAAGGGCCCAATTTCGGGGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTACCGTTAATAGCCGCAACCGATAGGTAATCTTCGTCCGGTTTTTTTCTTTTCTTCTCATGCTTGTGTCCCCCCTCTATGTTTCGTTCTCGGGTTCGTTTTCTTTTTTGTTTTGTGTTTTAAATTAGTGTTATTTATTTGTGTTCATTCGATTCCGTGCAGCAATTGGGGCTGTTTGCCGCTGTACACCGAGGCTAGGGCTTACCTGGAGGAAACAGTAAAGTAAGGGAGA]
[+] EMBL BM599002 [CCGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGCAAACCTTCGCAAACGGAGCCACGGTCCATGGTGGCGCTAAATGGTGGGCTTAATTTAAAGGACGAGGACGTCAAACCCTTCTTTGCCATGATGTAAATTGCTAGCGGCGGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACCGACTCTTCTAGTGTTCGCAGGAACGTCAGCTAATATGTTTAAAAAAAGAGATAAGGAGCGAGAGCGGTACGATTCGCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTGGGTGCGTTGTCGATTGCTTTAAATTATTTTTCACCATGCACCATGCGGTGTCGCGCCGGTCGGAAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAATAAATAGTTGCAATTTAAGTTATAATAACTTTATCGGTTCCGCGCTCGGAATCCATCCCGGGCCAGCAGCAGCATCGTCTTAGTGGCTTCCCAAAAGGGCCCAATTTCGGGGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTACCGTTAATAGCCGCAACCGATA ]
[+] EMBL BM646393 [ ccGCCATGATGTAAATTGCTAGCGGCGGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACCGACTCTTCTAGTGTTCGCAGGAACGTCAGCTAATATGTTTAAAAAAAGAGATAAGGAGCGAGAGCGGTACGATTCGCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTGGGTGCGTTGTCGATTGCTTTAAATTATTTTTCACCATGCACCATGCGGTGTCGCGCCGGTCGGAAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAATAAATAGTTGCAATTTAAGTTATAATAACTTTATCGGTTCCGCGCTCGGAATCCATCCCGGGCCAGCAGCAGCATCGTCTTAGTGGCTTCCCAAAAGGGCCCAATTTCGGGGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTACCGTTAATAGCCGCAACCGATAGGTAATCTTCGTCCGGTTTTTTTCTTTTCTTCTCATGCTTGTGTCCCCCCTCTATGTTTCGTTCTCGGGTTCGTTTTCTTTTTTGTTTTGTGTTTTAAATTAGTGTTATTTATTTGTGTTCATTCGATTCCGTGCAGCAATTGGGGCTGTTTGCCGCTGTACACCGAGGCTAGGGCTTACCTGGAGGAAACAGTAAAGTAAGGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6643#0 CGGGTTCGTGGACGGTTTCTGTTTGGCCGGAAGTGGACCGGGGCTGGTGTAAACATTCGC 60
consensus_6643#1 ------------------------------------------------------------
consensus_6643#0 CAACGACGGCGGTGAAGATGTGCTAAAGTGGAACTGCTCCAGCAAACGCCAGCGGAGGGT 120
consensus_6643#1 ------------------------------------------------------------
consensus_6643#0 AGAATCTTGCGCAAAGTATGCATGTGGCTCGGTGCACGGTGCTGACTCGCTACGGTCGTG 180
consensus_6643#1 ------------------------------------------------------------
consensus_6643#0 TACACTTGGGCTGTTTTTCGGTGTAAATTCGGCGTCTTTCCGGTCGCATGCTAGCG--CC 238
consensus_6643#1 -----------------CCGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTC 43
*** ** ** * **** ** * * *
consensus_6643#0 GGAAGGTCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTA 298
consensus_6643#1 CGGCAGTCGAGCACACTGAACAGC-------CACATTCGCATCCACGCCGACGACAAGTA 96
* *** * ****** * ** ****** **** * ** * * **
consensus_6643#0 CTCAGCAAATTCCCCCCCATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCA 358
consensus_6643#1 TT--GCAAACCTTCGCAAACGGA-GCCACGGTCCATGGT-GGCGCTAAATGGTGGGCTTA 152
* ***** * * * ** * * ** ** * ** ** * * * *
consensus_6643#0 CACCAAAGCACACACACACACACACACGTACGCACGGCTCCAACAAATACCAGTACCTTC 418
consensus_6643#1 ATTTAAAGGACGAGGACGT-CAAACCCTT---CTTTGCCATGATGTAAATTGCTAGCGGC 208
**** ** ** ** ** * * * ** * * * ** * *
consensus_6643#0 GTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGG 478
consensus_6643#1 GGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACC--GACTCTTCTAGTGTTCGCAGGA 266
* *** * * * * * * ** ** **** * *
consensus_6643#0 ACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAACGCTGAGGGGCTCGTTTG 538
consensus_6643#1 AC-----GTCAGCTAATATGTT-TAAAAAAAGAGATAAGGAGCGA-GAGCGGTACGATTC 319
** ** * * ** * * * ** **** ** *** ** ** **
consensus_6643#0 GCATCGCTCGTCGC-CACCACCGACAGTCGGCCCGATGTCACAGCAGGCGGTGGAAAGTG 597
consensus_6643#1 GCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTG 379
*** * * * * ** *** * * * ** * * * * * **
consensus_6643#0 GTGGTATGAAAATTTCCAACTGCTCGAAACCGTTCGCGTGCACCGAATGCAACAAATTGT 657
consensus_6643#1 G--GTGCG----TTGTCGATTGCTTTAAATTATTT---TTCACCATGCACCATGCGGTGT 430
* ** * ** * * **** *** ** * **** * * ***
consensus_6643#0 TTCGCCAGCTGAGCACACTGACCAACCACATGAAGATACACACGGGCGAAAAACCGTA-C 716
consensus_6643#1 CGCGCCGGTCGG--AAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAAT 488
**** * * * *** ** * ** ***** ** * * * **
consensus_6643#0 AAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAA 776
consensus_6643#1 AAATAGTTGCAATTTAAGTTATAATAACTTTAT-CGGTTCCGCGCTCGGAATCCAT---- 543
** * * * * * * * * * * ** * * **** * **
consensus_6643#0 ATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTG 836
consensus_6643#1 -CCCGGGCCAGCAGCAGCATCGTCT-TAGTGGCTTCC----CAAAAGGGCCCAATTTCGG 597
* ** * * * ** * *** **** * ** * *
consensus_6643#0 AGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTG 896
consensus_6643#1 GGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTA 657
* * * * * * * * ****** * *** * * ** *
consensus_6643#0 TGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCATTCGGAT 956
consensus_6643#1 --CCGTTAATAGCCGCAACCGATAGGTAATCTTCGTCCGGTTTTTTTCTTTTCTTCTCAT 715
* * ** ** * * * * * ** * ** *** **
consensus_6643#0 GATAAATTTTCTTCTCTCTACCCTCCTTCCCATCTAGACAATATTGACCTGATAGGTTCC 1016
consensus_6643#1 GCTTGTGTCCCCCCTCTATGTTTCGTTCTCGGGTTCGTTTTCTTTTTTGTTTTGTGTTTT 775
* * * * **** * * * * * ** * * ***
consensus_6643#0 TAACCTCTGTCTTTAAG--GCATAAAACCCTTCGAATGCAGCATCTGTCCGAAGGAGTTC 1074
consensus_6643#1 AAATTAGTGTTATTTATTTGTGTTCATTCGATTCCGTGCAGCAATTGG--GGCTGTTTGC 833
** *** ** * * * * * * ******* ** * * * *
consensus_6643#0 CGGCAGACGACGACCCTAGCGAATCACATAAAAATCCACACAGGTGAAAAGCCGTACGCC 1134
consensus_6643#1 CGCTGTACACCGAGGCTAGGGCTTACCTGGAGGAAACAGTAAAGTAAGGGAGA------- 886
** ** *** **** * * * * * ** * ** *
consensus_6643#0 TGCACGTACTGCAGCAAAACCTTTCGCCAGACGGGTACGCTTTCGAACCATCTGAAGATT 1194
consensus_6643#1 ------------------------------------------------------------
consensus_6643#0 CACACCGGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGC 1254
consensus_6643#1 ------------------------------------------------------------
consensus_6643#0 ACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGTAAGTACAGGGTTTTC 1314
consensus_6643#1 ------------------------------------------------------------
consensus_6643#0 AATATTGATTTATTTATCAAACAGTGG 1341
consensus_6643#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||