|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 780 fasta sequence
[CCGCGGACGCGTGGGTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAA-GGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCGAAGGATGAAGAGGGTCGCCAGATCGCCACCACCGAGGACGGCCGCCAGCTGGTGCTGAGCCAGCCGCACGAAACCAA]
[+] EMBL BM617327 [CCGCGGACGCGTGGGTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAAGGGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCGAAGGATGAAGAGGGTCGCC ]
[+] EMBL BM608390 [ CCG ATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACTGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTACTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAA GGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCG AGGATGAAGAGGGTCGCCAGATCGCCACCACCGAGGACG ]
[+] EMBL BM595182 [ ccGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAA GGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCGAGGGATGAAGAGGGTCGCCAGATCGCCACCACCGAGGACGGCCGCCAGCTGGTGCTGAGCCAGCCGCACGAAACCAA]
consensusID : consensus_6646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGATACATACACACACACTGTACACCAACAATAGAAAGTGTTACCAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTAGAAGCTTAGTCTCAGCTCAGTGTGGCATGCCCTTTCACTCTTTCTCGTTTGATGGACCTATTCCACAGCTAGATGCTGTTTCTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTGCCGGTGGTATTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGG]
[+] EMBL BM595458 [CCGATACATACACACACACTGTACACCAACAATAGAAAGTGTTACCAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTAGAAGCTTAGTCTCAGCTCAGTGTGGCATGCCCTTTCACTCTTTCTCGTTTGATGGACCTATTCCACAGCTAGATGCTGTTTCTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTGCCGGTGGTATTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGG]
consensusID : consensus_6646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[CCGAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTACAAGCTTAGTCTCAGCTCAGTGTGGCACGCAACTATCTCAGGGAGAAAAAAAGCTACTTGCCCTTTCACTCTTTCTCGTTGGATGGTCCTTGTCCACAGCTAGATGCTGTTTCTTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTTGCCGGTGGTATTCGGATTGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTT]
[+] EMBL BM616391 [CCGAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTACAAGCTTAGTCTCAGCTCAGTGTGGCACGCAACTATCTCAGGGAGAAAAAAAGCTACTTGCCCTTTCACTCTTTCTCGTTGGATGGTCCTTGTCCACAGCTAGATGCTGTTTCTTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTTGCCGGTGGTATTCGGATTGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6646#1 CCGATACATACACACACACTGTACACCAACAATAGAAAGTGTTACCAACTGCCGTTAGGT 60
consensus_6646#2 -------------------------------------------CCGAACTGCCGTTAGGT 17
consensus_6646#0 -------------------------------------------CCGCGGACGCGT-GGGT 16
* *** ***
consensus_6646#1 TGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATA 120
consensus_6646#2 TGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATA 77
consensus_6646#0 CGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAA 76
** * * * ** * * * **** * * ** *** *** ** *
consensus_6646#1 CGTCATCATACGTGTCTCTCGCT--TTGGCTAGAAGCTTAGTCTCAGCTCAGTGTGGCA- 177
consensus_6646#2 CGTCATCATACGTGTCTCTCGCT--TTGGCTACAAGCTTAGTCTCAGCTCAGTGTGGCAC 135
consensus_6646#0 C-TGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGT 135
* * * * **** * * * ** * * * * ** * **
consensus_6646#1 ------------------------------TGCCCTTT----CACTCTTTCTCGTTTGAT 203
consensus_6646#2 GCAACTATCTCAGGGAGAAAAAAAGCTACTTGCCCTTT----CACTCTTTCTCGTTGGAT 191
consensus_6646#0 GGATTCGGCTTCGGGTGCCGGGAGAC-GCCCGACATTTATGACAAATTTCTCCAGGAGCT 194
* * *** ** ** * * *
consensus_6646#1 GGACCTATTCCACAGCTAGATGCTGTTTCTTTTTTTT-C-TTGCACATCGTCACCTTTGG 261
consensus_6646#2 GGTCCTTGTCCACAGCTAGATGCTGTTTCTTTTTTTTTC-TTGCACATCGTCACCTTTGG 250
consensus_6646#0 CGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGA 254
* ** ** * * * *** * * * ** **** * *
consensus_6646#1 GCGCCATTTTGAACATTGATTT-GCCGGTGGTA--TTCGGAATGTTTTCGCATTAGACTT 318
consensus_6646#2 GCGCCATTTTGAACATTGATTTTGCCGGTGGTA--TTCGGATTGTTTTCGCATTAGACTT 308
consensus_6646#0 GCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACAT 314
** ** * ** * * **** * * * ** * * ** *
consensus_6646#1 GCGC--CCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGAC 376
consensus_6646#2 GCGC--CCGAATTACGCTGCTCGTT----------------------------------- 331
consensus_6646#0 GCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAA 374
**** ** * * * ****
consensus_6646#1 CGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGG 436
consensus_6646#2 ------------------------------------------------------------
consensus_6646#0 CAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCT 434
consensus_6646#1 AGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGG 496
consensus_6646#2 ------------------------------------------------------------
consensus_6646#0 TTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAG 494
consensus_6646#1 CGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAAT 556
consensus_6646#2 ------------------------------------------------------------
consensus_6646#0 CGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAAT 554
consensus_6646#1 ACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCG 616
consensus_6646#2 ------------------------------------------------------------
consensus_6646#0 TTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACT 614
consensus_6646#1 TAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACAC 676
consensus_6646#2 ------------------------------------------------------------
consensus_6646#0 GTACACCAAGGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGA 674
consensus_6646#1 ACGG-------------------------------------------------------- 680
consensus_6646#2 ------------------------------------------------------------
consensus_6646#0 TCCCGACGACACGAAGACTACGTACAGCGAAGGATGAAGAGGGTCGCCAGATCGCCACCA 734
consensus_6646#1 ----------------------------------------------
consensus_6646#2 ----------------------------------------------
consensus_6646#0 CCGAGGACGGCCGCCAGCTGGTGCTGAGCCAGCCGCACGAAACCAA 780
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||