These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 921 fasta sequence [CCGATCGCGAGCACGTTAGTTTTTCATCTGTGAAAAGTAAAATATGTCGGTAAATCCCAATGCACCCCCGAGTTCTGCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGCTGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAAGGTGGAAGTTCCGGTGTACAATTTCGTTACCCATTCAAGGGAATCGCACACGAAAACTATGTACGGTGCAAACGTCATCATTTTCGAAGGCATCCTTACGTTCCATAGCAAGGAAATTCTTAAGATGCTGGACATGAAGGTGTTCGTCGATACCGACGCGGACATTCGGCTGGCCAGACGGCTCAAGCGGGACATCATGCAGCGCGGTCGCGATTTGGAGGGCGTACTTAAACAATATTCGACCATGGTGAAGCCGGCGTACTGCTGCTACATCGCTCCCAC] [+] EMBL BM651648 [CCGATCGCGAGCACGTTAGTTTTTCATCTGTGAAAAGTAAAATATGTCGGTAAATCCCAATGCACCCCCGAGTTCTGCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGC ] [+] EMBL AGA282684 [ GCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTG ] [-] EMBL AGA281056 [ ACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGCTGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAAGGTGGAAGTTCCGGTGTACAATTTCGTTACCCATTCAAGGGAATCGCACACGAA ] [+] EMBL BM596449 [ ccgGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGCTGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAGGGTGGAAGTTCCGGTGTACAATTTCGTTACCCATTCAAGGGAATCGCACACGAAAACTATGTACGGTGCAAACGTCATCATTTTCGAAGGCATCCTTACGTTCCATAGCAAGGAAATTCTTAAGATGCTGGACATGAAGGTGTTCGTCGATACCGACGCGGACATTCGGCTGGCCAGACGGCTCAAGCGGGACATCATGCAGCGCGGTCGCGATTTGGAGGGCGTACTTAAACAATATTCGACCATGGTGAAGCCGGCGTACTGCTGCTACATCGCTCCCAC] consensusID : consensus_6659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [CCGTTGAAATTGCTTCCCCGTCTCTCCGGCTTCTAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCT] [+] EMBL BM584381 [CCGTTGAAATTGCTTCCCCGTCTCTCCGGCTTCTAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6659#0 CCGATCGCGAGCACGTTAGTTTTTCATCTGTGAAAAGTAAAATATGTCGGTAAATCCCAA 60 consensus_6659#1 ----------------------------------------------CCGTTGAA----AT 10 ** * ** * consensus_6659#0 TGCACCCCCGAGTTCTGCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAAC 120 consensus_6659#1 TGCTTCCCCG---TCT-CTCCGGCTTCTAGTGACGCAAGCGAGCCGAAGGAGTGCGAAAC 66 *** ***** *** * * * ********************************* consensus_6659#0 GCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCC 180 consensus_6659#1 GCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCC 126 ************************************************************ consensus_6659#0 GGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTT 240 consensus_6659#1 GGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTT 186 ************************************************************ consensus_6659#0 -CGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGA 299 consensus_6659#1 TCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGA 246 *********************************************************** consensus_6659#0 ACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCG 359 consensus_6659#1 ACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCG 306 ************************************************************ consensus_6659#0 GCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCT 419 consensus_6659#1 GCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCT 366 ************************************************************ consensus_6659#0 GCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACG 479 consensus_6659#1 GCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACG 426 ************************************************************ consensus_6659#0 TGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGC 539 consensus_6659#1 TGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGC 486 ************************************************************ consensus_6659#0 ACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGC 599 consensus_6659#1 ACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCT----- 541 ******************************************************* consensus_6659#0 TGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAAGGTGGAAGTTCCGGTGTACA 659 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 ATTTCGTTACCCATTCAAGGGAATCGCACACGAAAACTATGTACGGTGCAAACGTCATCA 719 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TTTTCGAAGGCATCCTTACGTTCCATAGCAAGGAAATTCTTAAGATGCTGGACATGAAGG 779 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TGTTCGTCGATACCGACGCGGACATTCGGCTGGCCAGACGGCTCAAGCGGGACATCATGC 839 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 AGCGCGGTCGCGATTTGGAGGGCGTACTTAAACAATATTCGACCATGGTGAAGCCGGCGT 899 consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 ACTGCTGCTACATCGCTCCCAC 921 consensus_6659#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||