These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGCACACACTTACACTGAGAAAGGGAGAGAAAGAGAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGATTTACTGAGCAACCACTACACCGCTCAGCAGGCGGGAAACGGAAAAGAGAGACAGAAGAGAAAAGCTTAAAGCTCTCCAGCTAGAGGGAGACCGCAGTAACCCTACCCGGCGAAGGAAGTAGCAGGCAGAAGCGAGATGTGCGATTCGTAGTGGCCGAGAATTCGAGAAAGTAGTAGTGAACACATACACAAACATACGTACACACACACATACATACACACATGAAACACAAAAACACCTAAAAGTTAAGATGTTAGTTGCAGACACCGTGTCGAGAAAATGTAGAGTGCGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCCAAAACTGGGTTGAAAACCT] [+] EMBL BM641563 [CCGCACACACTTACACTGAGAAAGGGAGAGAAAGAGAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGATTTACTGAGCAACCACTACACCGCTCAGCAGGCGGGAAACGGAAAAGAGAGACAGAAGAGAAAAGCTTAAAGCTCTCCAGCTAGAGGGAGACCGCAGTAACCCTACCCGGCGAAGGAAGTAGCAGGCAGAAGCGAGATGTGCGATTCGTAGTGGCCGAGAATTCGAGAAAGTAGTAGTGAACACATACACAAACATACGTACACACACACATACATACACACATGAAACACAAAAACACCTAAAAGTTAAGATGTTAGTTGCAGACACCGTGTCGAGAAAATGTAGAGTGCGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCCAAAACTGGGTTGAAAACCT] consensusID : consensus_6660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCCAGGCTTTAACGATCTTCTGACTCACTTCCGGAAGCCGGATGTAAAAAGACGGAAACAAAAAAAAACTAAAACGATAGAAAAAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGGGAGAGCAAAGAGCAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAANAGTAGCAGTATANNNATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGCAAGCGAAACAACATACGAATATGCAAACACTGACTTCTACTCGANCAACCACTACACCGCTCANCAGCGCGGCGNAAACGGCNAAGCAGAGACNNNCAAGAGAAACNCAGCTTANACAGCTCCTCCAGCTACAGGGAGACCCGCAGTAAACCCCTACCCGGCGCANCGGNACAGTACCCAGCGCCNCANGCGAGAATGTGCGATCGCAACNGGCACCGACGCAACTCCNAGCACAANGTACGTCACGTGAACACATACACAACAC] [+] EMBL AL695900 [CCCAGGCTTTAACGATCTTCTGACTCACTTCCGGAAGCCGGATGTAAAAAGACGGAAACAAAAAAAAACTAAAACGATAGAAAAAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGGGAGAGCAAAGAGCAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAANAGTAGCAGTATANNNATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGCAAGCGAAACAACATACGAATATGCAAACACTGACTTCTACTCGANCAACCACTACACCGCTCANCAGCGCGGCGNAAACGGCNAAGCAGAGACNNNCAAGAGAAACNCAGCTTANACAGCTCCTCCAGCTACAGGGAGACCCGCAGTAAACCCCTACCCGGCGCANCGGNACAGTACCCAGCGCCNCANGCGAGAATGTGCGATCGCAACNGGCACCGACGCAACTCCNAGCACAANGTACGTCACGTGAACACATACACAACAC] consensusID : consensus_6660#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [ACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACAACAAAGAAGCAAAAACACACTCACACACACAAGAAATCGTAGTAGTAACAAAGAGAGACAAACAAAATGCAGAAACGTTGTAGCCTGTAAGGATTGATAATGGGATGTTGAAATCGAAAAAAGGGAAGAGAGCGCGAGAGAGAGAGAGCGTGAGTGGGAGAGGGAAGGACAGTTAAATGAAGATGAAAAATGAGAAAAAAAGAACCTTTAGCAGCTAAGTGAAACGAAGAAACGCAAACAAAACAAAACAGATGAAACACGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA] [+] EMBL BX608336 [ACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACAACAAAGAAGCAAAAACACACTCACACACACAAGAAATCGTAGTAGTAACAAAGAGAGACAAACAAAATGCAGAAACGTTGTAGCCTGTAAGGATTGATAATGGGATGTTGAAATCGAAAAAAGGGAAGAGAGCGCGAGAGAGAGAGAGCGTGAGTGGGAGAGGGAAGGACAGTTAAATGAAGATGAAAAATGAGAAAAAAAGAACCTTTAGCAGCTAAGTGAAACGAAGAAACGCAAACAAAACAAAACAGATGAAACACGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA] consensusID : consensus_6660#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [CAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA] [+] EMBL BX610819 [CAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA] consensusID : consensus_6660#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [TATGCTCGGATAGCTGTTTACCCTTTTTTATTTTTTACATACATACAACATACACACACACATACATACAATTCATAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGAGGGAGAGAGAGAAAGAGAGAAAAGGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCT] [+] EMBL BM637086 [TATGCTCGGATAGCTGTTTACCCTTTTTTATTTTTTACATACATACAACATACACACACACATACATACAATTCATAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGAGGGAGAGAGAGAAAGAGAGAAAAGGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6660#1 ----------------------------------------------------CCCAGGCT 8 consensus_6660#4 ------------------------------------------------------TATGCT 6 consensus_6660#0 CCGCACACACTTACACTGAGAAAGGGAGAGAAAGAGAAAGAGAAGCAGAAAACTTATTTT 60 consensus_6660#3 ------------------------------------------------------------ consensus_6660#2 -------------------------------------------------------ACGGC 5 consensus_6660#1 TTAACGATCTTCTGACTCACTTCCGGAAGCCGGATGT-AAAAAGACGGAAACAAAAAAAA 67 consensus_6660#4 CGGATAGCTGTTT-ACCCTTTTTTATTTTTTACATAC-ATACA-ACATACACACACACAT 63 consensus_6660#0 TGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAAT 120 consensus_6660#3 ------------CAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAAT 48 consensus_6660#2 GAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAAC 65 * * * * * * consensus_6660#1 ACTAAAACGATAGAAAAAGAAGAAGAATTAATGTTTGCAGAT---TATGC-TGCATGC-- 121 consensus_6660#4 AC--ATACAATTCAT--AGAAGAAGAATTAATGTTTGCAGAT---TATGC-TGCATGC-- 113 consensus_6660#0 GAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGT 180 consensus_6660#3 GAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGT 108 consensus_6660#2 GCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAA----ACCTCAACCTACCA 121 * * * * * * * * * consensus_6660#1 -TGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAA 180 consensus_6660#4 -TGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAA 172 consensus_6660#0 GTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAA 240 consensus_6660#3 GTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAA 168 consensus_6660#2 AAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACA 181 * * * * * * * consensus_6660#1 GGG------AGAGCAAAGAGCAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAA 234 consensus_6660#4 GAGGGAGAGAGAGAAAGAGAGAAAAGGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAA 232 consensus_6660#0 ATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGATTTACTGAGCAACCACTAC 300 consensus_6660#3 ATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGGTTTGAAAACC--TCAACCT 226 consensus_6660#2 AAACAACAAAGAAGCAAAAACACACTCACACACACAAGAAATCGTAGTAGTAACAAAGAG 241 ** * * * * * ** * consensus_6660#1 AT-CGCCTAGTGTGTAAGGATGTTAAAT-----GAANAGTAGCAGTATANNNATGAAGAA 288 consensus_6660#4 AT-CGCCT---------------------------------------------------- 239 consensus_6660#0 AC-CGCTCAGCAGGCGGGAAACGGAAAA-----GAGAGACAGAAGAGAAAAGCTTAAAGC 354 consensus_6660#3 AC-CAAAAAAAAGAAAAGAAACACAAAA-----CAAACAGACAAACAAATAAATGAAAAT 280 consensus_6660#2 AGACAAACAAAATGCAGAAACGTTGTAGCCTGTAAGGATTGATAATGGGATGTTGAAATC 301 * * consensus_6660#1 AAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGAT 348 consensus_6660#4 ------------------------------------------------------------ consensus_6660#0 TCTCCAGCTAGAGGGAGACCGCAGTAACCCTACCCGGCGAAGGAAGTAGCAGGCAGAAGC 414 consensus_6660#3 GCAATGACAAAACA---------------------------------------------- 294 consensus_6660#2 GAAAAAAGGGAAGAGAGCGCGAGAGAGAGAGAGCGTGAGTGGGAGAGGGAAGGACAGTTA 361 consensus_6660#1 GCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCAC 408 consensus_6660#4 ------------------------------------------------------------ consensus_6660#0 GAGATGTGCGATTCGTAGTGGCCGAGAATTCGAGAAAGTAGTAGTGAACACATACACAAA 474 consensus_6660#3 ------------------------------------------------------------ consensus_6660#2 AATGAAGATGAAAAATGAGAAAAAAAGAACCTTTAGCAGCTAAGTGAAACGAAGAAACGC 421 consensus_6660#1 TCTTGCAAGCGAAACAACATACGAATATGCAAACACTGACTTCTACTCGANCAACCACTA 468 consensus_6660#4 ------------------------------------------------------------ consensus_6660#0 CATACGTACACACACACATACATACACACATGAAACACAAAAACACCTAAAAGTTAAGAT 534 consensus_6660#3 ------------------------------------------------------------ consensus_6660#2 AAACAAAACAAAACAGATGAAACACGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGC 481 consensus_6660#1 CACCGCTCANCAGCGCGGCGNAAACGGCNAAGCAGAGACNNNCAAGAGAAACNCAGCTTA 528 consensus_6660#4 ------------------------------------------------------------ consensus_6660#0 GTTAGTTGCAGACACCGTGTCGAGAAAATGTAGAGTGCGGAACGGCGAAATCACCGCGCC 594 consensus_6660#3 ------------------------------------------------------------ consensus_6660#2 GCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCA 541 consensus_6660#1 NACAGCTCCTCCAGCTACAGGGAGACCCGCAGTAAACCCCTACCCGGCGCANCGGNACAG 588 consensus_6660#4 ------------------------------------------------------------ consensus_6660#0 TACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAA 654 consensus_6660#3 ------------------------------------------------------------ consensus_6660#2 AAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGA 601 consensus_6660#1 TACCCAGCGCCNCANGCGAGAATGTGCGATCGCAACNGGCACCGACGCAACTCCNAGCAC 648 consensus_6660#4 ------------------------------------------------------------ consensus_6660#0 CAAAAAACAACCCAAAACTGGGTTGAAAACCT---------------------------- 686 consensus_6660#3 ------------------------------------------------------------ consensus_6660#2 CAAACAAATAAATGAAAATGCAATGACAAAACA--------------------------- 634 consensus_6660#1 AANGTACGTCACGTGAACACATACACAACAC 679 consensus_6660#4 ------------------------------- consensus_6660#0 ------------------------------- consensus_6660#3 ------------------------------- consensus_6660#2 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||