cluster # 6668

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Anopheles gambiae
cluster # 6668 cluster # 6668 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6668#0 length = 770 sequences # 2
consensus_6668#1 length = 559 sequences # 1

consensus_6668#2 length = 414 sequences # 1
consensus_6668#3 length = 335 sequences # 1

consensusID : consensus_6668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 770
fasta sequence

                              [CCGCGGACGCGTGGGTATGTTTTGGGGTTCAGCCAAGCAGAGACCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTTAGTGTGTGTGTGTGTGTGTGCACGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCCTCCCACTTCCTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAATAAGAAAAAAAAAACACGGGAAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGAGAAGGAGAGGGAGAGCGACGATCGGAACGACTACCATCATCGACAGGCGAAGGTAGAGGGGAAAAAAGCTGGAATTGAACATCGGCAAACAAACTACTAAGCATCATCGCACAACAAACAGAGCAGCTCCTCCGCCGTTATCTCGCTGGAATATGGTGCACTGAGAGGAACACACCACATCAGGAGAAAGGGAGACGACGTGGGCCCGAGGAAGAGACAGAGGAAGCGTACGGTGTGTGGCAGCGCCACAGG]

[+] EMBL BM653933             [CCGCGGACGCGTGGGTATGTTTTGGGGTTCAGCCAAGCAGAGACCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTTAGTGTGTGTGTGTGTGTGTGCACGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCCTCCCACTTCCTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAATAAGAAAAAAAAAACACGGGAAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGAGAAGGAGAGGGAGAGCGACGATCGGAACGACTACCATCATCGACAGGCGAAGGTAGAGGGGAAAAAAGCTGGAATTGAACATCGGCAAACAAACTACTAAGCATCATCGCACAACAAACAGAGCAGCTC                                                                                                                           ]
[+] EMBL BM602181             [                                                                                                                                                                                                                 ccgGTGGGTTTCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCCTCCCACTTCCTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAATAAGAAAAAAAAAACACGGGAAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGAGAAGGAGAGGGAGAGCGACGATCGGAACGACTACCATCATCGACAGGCGAAGGTAGAGGGGAAAAAAGCTGGAATTGAACATCGGCAAACAAACTACTAAGCATCATCGCACAACAAACAGAGCAGCTCCTCCGCCGTTATCTCGCTGGAATATGGTGCACTGAGAGGAACACACCACATCAGGAGAAAGGGAGACGACGTGGGCCCGAGGAAGAGACAGAGGAAGCGTACGGTGTGTGGCAGCGCCACAGG]




>consensus_6668#0
CCGCGGACGCGTGGGTATGTTTTGGGGTTCAGCCAAGCAGAGACCGTTTGCCGCTGCGTG
CGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGAGGAGGCCCC
CGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTTAGTGTGTGTGTGTGTGTGTGCA
CGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTGATTTTGTTGTTGT
TGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTT
GTGTATGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGAC
GTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCCTCCCACTTCCTGCAACGCGCT
GCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAATAAGAAAAAAAAAACACGGG
AAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGAGAAGGAGAGGGAGAGCGACGAT
CGGAACGACTACCATCATCGACAGGCGAAGGTAGAGGGGAAAAAAGCTGGAATTGAACAT
CGGCAAACAAACTACTAAGCATCATCGCACAACAAACAGAGCAGCTCCTCCGCCGTTATC
TCGCTGGAATATGGTGCACTGAGAGGAACACACCACATCAGGAGAAAGGGAGACGACGTG
GGCCCGAGGAAGAGACAGAGGAAGCGTACGGTGTGTGGCAGCGCCACAGG

consensusID : consensus_6668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [CCGGTCCCGTGAGCGTGCGTGCGTATGTTTTGGGGTTCAGCCAAGCAGAGAGTGAGTTTTTCGGTGCTGGGGGCAACATCATTGTGGCCAGTGTTCCTGTCCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGCAAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTGTGTGTGTGTGCGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTTGATTTCGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTGTGTGCGCTTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCTCCCACTTCCTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAACAGGAAAAACAAAAAAAAAACACGGAAAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGA]

[+] EMBL BM617131             [CCGGTCCCGTGAGCGTGCGTGCGTATGTTTTGGGGTTCAGCCAAGCAGAGAGTGAGTTTTTCGGTGCTGGGGGCAACATCATTGTGGCCAGTGTTCCTGTCCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGCAAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTGTGTGTGTGTGCGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTTGATTTCGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTGTGTGCGCTTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCTCCCACTTCCTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAACAGGAAAAACAAAAAAAAAACACGGAAAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGA]




>consensus_6668#1
CCGGTCCCGTGAGCGTGCGTGCGTATGTTTTGGGGTTCAGCCAAGCAGAGAGTGAGTTTT
TCGGTGCTGGGGGCAACATCATTGTGGCCAGTGTTCCTGTCCGTTTGCCGCTGCGTGCGT
GGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGCAAGGAGGCCCCC
GAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTGTGTGTGTGTGCGCACTCCTCCCC
CGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTTGATTTCGTTGTTGTTGTTGTTGGAGC
AGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTGTGTGCGC
TTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGC
CAGAGCACACCGCCTCCCACTTCCTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTG
TGTGAAGTGGAGAAACAGGAAAAACAAAAAAAAAACACGGAAAAACACCCCAAAAAAGCA
CCGTTTCAGCACCTTGCGA

consensusID : consensus_6668#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [CCGGTTTTTCGGTGCTGGGGGCAACATCAGTGTGGCCAGTGTTCCTGTGAGTGTGTGTCCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGCAAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTTCGCGCGCGCTTGTGTTAGTGTGTGTGTGTGTGCGCGCATTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTCCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCC]

[+] EMBL BM598380             [CCGGTTTTTCGGTGCTGGGGGCAACATCAGTGTGGCCAGTGTTCCTGTGAGTGTGTGTCCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGCAAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTTCGCGCGCGCTTGTGTTAGTGTGTGTGTGTGTGCGCGCATTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTCCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCACCCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCC]




>consensus_6668#2
CCGGTTTTTCGGTGCTGGGGGCAACATCAGTGTGGCCAGTGTTCCTGTGAGTGTGTGTCC
GTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGT
GTGTGCAAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTTCGCGCGCGCTTGTGTTAGTGT
GTGTGTGTGTGCGCGCATTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTCCCCCCTG
ATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTT
AGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCAC
CCCAGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCC

consensusID : consensus_6668#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [CCGACCTGATTATCGCCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTTAGTGTGTGTGTGTGTGTGTGCACGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGCGCCTAGAAACACGTATGTGTCCCACCCCATTTGTGTTGACGTA]

[+] EMBL BM610591             [CCGACCTGATTATCGCCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTTAGTGTGTGTGTGTGTGTGTGCACGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGCGCCTAGAAACACGTATGTGTCCCACCCCATTTGTGTTGACGTA]




>consensus_6668#3
CCGACCTGATTATCGCCGTTTGCCGCTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAAT
TGTGCCGCAAAGCAAGTGTGTGAGGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCG
CGCTTGTGTTAGTGTGTGTGTGTGTGTGTGCACGCACTCCTCCCCCGGTGTGAGTGTGTG
CAGTGTGGGTTTCCCCCTGATTTTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTT
GGAAGGTGTGCTGTACTTTAGTGTGAGTGGTTGTGTATGTGTGTGTGTGTGCGCCTAGAA
ACACGTATGTGTCCCACCCCATTTGTGTTGACGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6668#0      ------------------------------------------------------------
consensus_6668#3      ------------------------------------------------------------
consensus_6668#2      ----------------------------------------------------CCGGTTTT 8
consensus_6668#1      CCGGTCCCGTGAGCGTGCGTGCGTATGTTTTGGGGTTCAGCCAAGCAGAGAGTGAGTTTT 60
                                                                                  

consensus_6668#0      ------CCGCGGACG-CGTGGGTATGTTTTGGGGTTCAGCCAAGCAGAGACCGTTTGCCG 53
consensus_6668#3      -----------------------------------CCGACCTGATTATCGCCGTTTGCCG 25
consensus_6668#2      TCGGTGCTGGGGGCAACATCAGTGTGGCCAGTGTTCCTGTGAGTGTGTGTCCGTTTGCCG 68
consensus_6668#1      TCGGTGCTGGGGGCAACATCATTGTGGCCAGTGTTCCTGT----------CCGTTTGCCG 110
                                                          *             **********

consensus_6668#0      CTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTG--A 111
consensus_6668#3      CTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTG--A 83
consensus_6668#2      CTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGCAA 128
consensus_6668#1      CTGCGTGCGTGGAGATATGTTTGTTCGAGCGTAATTGTGCCGCAAAGCAAGTGTGTGCAA 170
                      *********************************************************  *

consensus_6668#0      GGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTTAGTGTGTGTGTGT 171
consensus_6668#3      GGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGTTAGTGTGTGTGTGT 143
consensus_6668#2      GGAGGCCCCCGAGCTGGTAGGCCCGTTCGTTCGCGCGCGCTTGTGTTAGTGTGTGTGTGT 188
consensus_6668#1      GGAGGCCCCCGAGCTGGTAGGCCCGTTCGTCCGCGCGCGCTTGTGT--------GTGTGT 222
                      ****************************** ***************        ******

consensus_6668#0      GTGTGTGCACGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCT-GATT 230
consensus_6668#3      GTGTGTGCACGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCT-GATT 202
consensus_6668#2      GTGCG----CGCATTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTCCCCCCT-GATT 243
consensus_6668#1      GTGTG----CGCACTCCTCCCCCGGTGTGAGTGTGTGCAGTGTGGGTTTCCCCCTTGATT 278
                      *** *    **** ********************************** ****** ****

consensus_6668#0      TTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGT 290
consensus_6668#3      TTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGT 262
consensus_6668#2      TTGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGT 303
consensus_6668#1      TCGTTGTTGTTGTTGTTGGAGCAGCGCACTGTTCCGTTGGAAGGTGTGCTGTACTTTAGT 338
                      * **********************************************************

consensus_6668#0      GTGAGTGGTTGTGTATGTGTGTGTGTGTG--CGCCTAGAAACGCGTATGTGTCCCACCCC 348
consensus_6668#3      GTGAGTGGTTGTGTATGTGTGTGTGTGTG--CGCCTAGAAACACGTATGTGTCCCACCCC 320
consensus_6668#2      GTGAGTGGTTGTGTATGTGTGTGTGTGTGTGCGCCTAGAAACGCGTATGTGTCCCACCCC 363
consensus_6668#1      GTGAGTGGTTGTGTGTGTG------------CGCTTAGAAACGCGTATGTGTCCCACCCC 386
                      ************** ****            *** ******* *****************

consensus_6668#0      AGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCCTCCCACTTC 408
consensus_6668#3      ATTTGTGTTGACGTA--------------------------------------------- 335
consensus_6668#2      AGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCCGCC--------- 414
consensus_6668#1      AGTTGTGTTGACGTAGCGGTGATTTTCCCATCGCCAGAGCACACCGCC---TCCCACTTC 443
                      * *************                                             

consensus_6668#0      CTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAATAAGAAAA 468
consensus_6668#3      ------------------------------------------------------------
consensus_6668#2      ------------------------------------------------------------
consensus_6668#1      CTGCAACGCGCTGCACTTTTCGGCAACCATTTTGCTGTGTGAAGTGGAGAAACAGGAAAA 503
                                                                                  

consensus_6668#0      A------AAAAACACGGGAAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGAGAAG 522
consensus_6668#3      ------------------------------------------------------------
consensus_6668#2      ------------------------------------------------------------
consensus_6668#1      ACAAAAAAAAAACACGGAAAAACACCCCAAAAAAGCACCGTTTCAGCACCTTGCGA---- 559
                                                                                  

consensus_6668#0      GAGAGGGAGAGCGACGATCGGAACGACTACCATCATCGACAGGCGAAGGTAGAGGGGAAA 582
consensus_6668#3      ------------------------------------------------------------
consensus_6668#2      ------------------------------------------------------------
consensus_6668#1      ------------------------------------------------------------
                                                                                  

consensus_6668#0      AAAGCTGGAATTGAACATCGGCAAACAAACTACTAAGCATCATCGCACAACAAACAGAGC 642
consensus_6668#3      ------------------------------------------------------------
consensus_6668#2      ------------------------------------------------------------
consensus_6668#1      ------------------------------------------------------------
                                                                                  

consensus_6668#0      AGCTCCTCCGCCGTTATCTCGCTGGAATATGGTGCACTGAGAGGAACACACCACATCAGG 702
consensus_6668#3      ------------------------------------------------------------
consensus_6668#2      ------------------------------------------------------------
consensus_6668#1      ------------------------------------------------------------
                                                                                  

consensus_6668#0      AGAAAGGGAGACGACGTGGGCCCGAGGAAGAGACAGAGGAAGCGTACGGTGTGTGGCAGC 762
consensus_6668#3      ------------------------------------------------------------
consensus_6668#2      ------------------------------------------------------------
consensus_6668#1      ------------------------------------------------------------
                                                                                  

consensus_6668#0      GCCACAGG 770
consensus_6668#3      --------
consensus_6668#2      --------
consensus_6668#1      --------