cluster # 6683

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Anopheles gambiae
cluster # 6683 cluster # 6683 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6683#0 length = 686 sequences # 1

consensus_6683#1 length = 493 sequences # 3
consensus_6683#2 length = 378 sequences # 1

consensusID : consensus_6683#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGGGATGAAGAAGAGGATGAAGAGGAAGAAGAATCGTTAGCAATGCCAACGAATGCGGATTGCTTTCTGCACTAGCTTCCTGCTGCAAGGCGCTTTTCCTAGCCTCAATGGCCCGTCGTCCCACATCGCTCCGGAAACGGTTATAAGGTTGGTGGTGTAGTGTAATCCTAGCGGGAATCGGAAGCAACAATCAGGCAATATCGTTATAATTTAGTTTCACGTGTAAAGGCAACGTAAATATTACCAGCCTCTAGTGTGATAAGTCATTGCTCATAAGGTGAACCAGAAGGGGAGTGGAAATACGTTTACAAACTACTAAAAACGTGCGCTGGTTATGTATGTGCACGTTCGAAATCGATCTCCACCACAACGGTGTTGGATGATACGACGCCGTATATGTGTTCGATTAGGTTTCGTTTTGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTTGGGTGTGCTATAACACCGTCGATACGCAAGTAAGACATGTTGTAAAACAAGGAGCGAGTTAACTGAGGAACTGAGGAACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTCGAAATGGGTTTTGTGCAGGATTTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTTACTGTGCACGGTTTCGATTAACGTGTGGCATATATGCTGAGGTAAAA]

[+] EMBL BM605756             [CCGGGATGAAGAAGAGGATGAAGAGGAAGAAGAATCGTTAGCAATGCCAACGAATGCGGATTGCTTTCTGCACTAGCTTCCTGCTGCAAGGCGCTTTTCCTAGCCTCAATGGCCCGTCGTCCCACATCGCTCCGGAAACGGTTATAAGGTTGGTGGTGTAGTGTAATCCTAGCGGGAATCGGAAGCAACAATCAGGCAATATCGTTATAATTTAGTTTCACGTGTAAAGGCAACGTAAATATTACCAGCCTCTAGTGTGATAAGTCATTGCTCATAAGGTGAACCAGAAGGGGAGTGGAAATACGTTTACAAACTACTAAAAACGTGCGCTGGTTATGTATGTGCACGTTCGAAATCGATCTCCACCACAACGGTGTTGGATGATACGACGCCGTATATGTGTTCGATTAGGTTTCGTTTTGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTTGGGTGTGCTATAACACCGTCGATACGCAAGTAAGACATGTTGTAAAACAAGGAGCGAGTTAACTGAGGAACTGAGGAACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTCGAAATGGGTTTTGTGCAGGATTTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTTACTGTGCACGGTTTCGATTAACGTGTGGCATATATGCTGAGGTAAAA]




>consensus_6683#0
CCGGGATGAAGAAGAGGATGAAGAGGAAGAAGAATCGTTAGCAATGCCAACGAATGCGGA
TTGCTTTCTGCACTAGCTTCCTGCTGCAAGGCGCTTTTCCTAGCCTCAATGGCCCGTCGT
CCCACATCGCTCCGGAAACGGTTATAAGGTTGGTGGTGTAGTGTAATCCTAGCGGGAATC
GGAAGCAACAATCAGGCAATATCGTTATAATTTAGTTTCACGTGTAAAGGCAACGTAAAT
ATTACCAGCCTCTAGTGTGATAAGTCATTGCTCATAAGGTGAACCAGAAGGGGAGTGGAA
ATACGTTTACAAACTACTAAAAACGTGCGCTGGTTATGTATGTGCACGTTCGAAATCGAT
CTCCACCACAACGGTGTTGGATGATACGACGCCGTATATGTGTTCGATTAGGTTTCGTTT
TGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTTGGGTGTGCTATAACACC
GTCGATACGCAAGTAAGACATGTTGTAAAACAAGGAGCGAGTTAACTGAGGAACTGAGGA
ACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTCGAAATGGGTTTTGTGCAGGAT
TTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTTACTGTGCACGGTTTCGATTAA
CGTGTGGCATATATGCTGAGGTAAAA

consensusID : consensus_6683#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 493
fasta sequence

                              [CCGCCCACGCGTCCGTTTGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTTGGGTGTGCTATAACACCGTCGATACGCAAGTAAGACATGTTGTAAAACAAGGAGCGAGTTAACTGAGGAACTGAGGAACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTCGAAATGGGTTTTGTGCAGGATTTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTTACTGTGCACGGTTTCGATTAACGTGTGGCATATATGCTGAGGTAAAACAAAAACACATATTTCTAAAGCAAACGCAAGCAAAGATCGAATGATCGGCAATAAGTAATTAGTGTGGGAGGGGAGGGGCAGACAAAAAAAAAACAACACTAATACAATAACACTAAGCCAACAGCAACCTTCCTTGGACTGTGAAACAACAAGATATGATACAATAAACAGTAGTAATTATTACGTGTTTTGCTCACGAGCACGAAAAA]

[+] EMBL BM612341             [CCGCCCACGCGTCCGTTTGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTTGGGTGTGCTATAACACCGTCGATACGCAAGTAAGACATGTTGTAAAACAAGGAGCGAGTTAACTGAGGAACTGAGGAACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTCGAAATGGGTTTTGTGCAGGATTTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTTACTGTGCACGGTTTCGATTAACGTGTGGCATATATGCTGAGGTAAAACAAAAACACATATTTCTAAAGCAAACGCAAGCAAAGATCGAATGATCGGCAATGAGTAATTAGTGTGGGAGGGGAGGGGCAGAC  AAAAAAAACAACACTAATACAATAACACTAAGCCAACAGCAACCTTCCTTGGACTGTGAAACAACAAGATATGATACAATAAACAGTAGTAATTATTAAGTGTTTTGCTCACGAGCACG     ]
[-] EMBL AGA281157            [                                                                                                                                                                                                                                                                                                                         GCAAAGATCGAATGATCGGCAATAAGTAATTAGTGTGGGAGGGGAGGGGCAGACAAAAAAAAAACAACACTAATACAATAACACTAAGCCAACAGCAACCTTCCTTGGACTGTGAAACAACAAGATATGATACAATAAACAGTAGTAATTATTACGTGTTTTGCTCAAAGGCAAAAAAAA]
[+] EMBL AGA282784            [                                                                                                                                                                                                                                                                                                                                  GAATGATCGGCAATAAGTAATTAGTGTGGGAGGGGAGGGGCAGACAAAAAAAAAACAACACTAATACAATAACACTAAGCCAACAGCAACCTTCCTTGGACTGTGAAACAACAAGATATGATACAATAAACAGTAGTAATTATTACGTGTTTTGC                ]




>consensus_6683#1
CCGCCCACGCGTCCGTTTGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTT
GGGTGTGCTATAACACCGTCGATACGCAAGTAAGACATGTTGTAAAACAAGGAGCGAGTT
AACTGAGGAACTGAGGAACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTCGAAA
TGGGTTTTGTGCAGGATTTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTTACTG
TGCACGGTTTCGATTAACGTGTGGCATATATGCTGAGGTAAAACAAAAACACATATTTCT
AAAGCAAACGCAAGCAAAGATCGAATGATCGGCAATAAGTAATTAGTGTGGGAGGGGAGG
GGCAGACAAAAAAAAAACAACACTAATACAATAACACTAAGCCAACAGCAACCTTCCTTG
GACTGTGAAACAACAAGATATGATACAATAAACAGTAGTAATTATTACGTGTTTTGCTCA
CGAGCACGAAAAA

consensusID : consensus_6683#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CAGAATCGCCACGAGGTAAGATGAAGAAGAGGAGGAAGAGGAAGAAGAATCGTTAGCAATGCCAACGAATGCGGATTGCTTTCTGCACTAGCGTATCCTGCTGCAAGGCGCTTTTCCTAGCCTCAATGGCCCGTCGTCCCACAGTCGCCCCGGAAACGGTATCCAACCTTAGTACCTTATTGGTGTAGGTATAAGCGTAGGTGAGTGCGCTAAGTCCCTAGCGGGAATTCGGAAGCAACAGAGTCAGGCAAGTATCGGTTANGTANAGTTTANGTGTGCAGCGGTGGTAAAGGCACACGGTAAGCACATATTACCAGCGCTCGTAGCTGCTGAACTNCACGCTCAGTTGCNTCACTTANAGGCTGGGACNAAGGAACG]

[+] EMBL BX466504             [CAGAATCGCCACGAGGTAAGATGAAGAAGAGGAGGAAGAGGAAGAAGAATCGTTAGCAATGCCAACGAATGCGGATTGCTTTCTGCACTAGCGTATCCTGCTGCAAGGCGCTTTTCCTAGCCTCAATGGCCCGTCGTCCCACAGTCGCCCCGGAAACGGTATCCAACCTTAGTACCTTATTGGTGTAGGTATAAGCGTAGGTGAGTGCGCTAAGTCCCTAGCGGGAATTCGGAAGCAACAGAGTCAGGCAAGTATCGGTTANGTANAGTTTANGTGTGCAGCGGTGGTAAAGGCACACGGTAAGCACATATTACCAGCGCTCGTAGCTGCTGAACTNCACGCTCAGTTGCNTCACTTANAGGCTGGGACNAAGGAACG]




>consensus_6683#2
CAGAATCGCCACGAGGTAAGATGAAGAAGAGGAGGAAGAGGAAGAAGAATCGTTAGCAAT
GCCAACGAATGCGGATTGCTTTCTGCACTAGCGTATCCTGCTGCAAGGCGCTTTTCCTAG
CCTCAATGGCCCGTCGTCCCACAGTCGCCCCGGAAACGGTATCCAACCTTAGTACCTTAT
TGGTGTAGGTATAAGCGTAGGTGAGTGCGCTAAGTCCCTAGCGGGAATTCGGAAGCAACA
GAGTCAGGCAAGTATCGGTTANGTANAGTTTANGTGTGCAGCGGTGGTAAAGGCACACGG
TAAGCACATATTACCAGCGCTCGTAGCTGCTGAACTNCACGCTCAGTTGCNTCACTTANA
GGCTGGGACNAAGGAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6683#0      ------------------------------------------------------------
consensus_6683#2      --------------------------------------------CAGAATCGCCACG--- 13
consensus_6683#1      CCGCCCACGCGTCCGTTTGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTT 60
                                                                                  

consensus_6683#0      --CCGGGATGAAGAAGAGGATGAAGAGGAAGAAGAATCGTTAGCAATGCCAACGAATGCG 58
consensus_6683#2      AGGTAAGATGAAGAAGAGGAGGAAGAGGAAGAAGAATCGTTAGCAATGCCAACGAATGCG 73
consensus_6683#1      GGGTGTGCTATAACACCGTCGATACGCAAGTAAGACATGTTGTAAAA--CAAGGA--GCG 116
                            * *  *  *  *     *    *  ****   ***   **   *** **  ***

consensus_6683#0      GATTGCTTTCTGCACTAGCT---T--CCTGCTGCAAGGCGCTTTTCCTAGCCTCAATGGC 113
consensus_6683#2      GATTGCTTTCTGCACTAGCG---TATCCTGCTGCAAGGCGCTTTTCCTAGCCTCAATGGC 130
consensus_6683#1      AGTTAACTGAGGAACTGAGGAACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTC 176
                        **   *   * ***       *     *     *** * ***   * * *  **** *

consensus_6683#0      CCGTCGTCCCACA-TC-GCTCCGGAAACGGTTATAAGGTTGGTGGTGTAGTGTAATCCTA 171
consensus_6683#2      CCGTCGTCCCACAGTC-GCCCCGGAAACGGTATCCAACCT-------TAGTA----CCTT 178
consensus_6683#1      GAAATGGGTTTTGTGCAGGATTTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTT 236
                           *         * *      *     *    *           ****      ** 

consensus_6683#0      GCGG-GAATCGGA---AGCAACAATCAGGCAATATCGTTATAATTTAGTTTCACGTGTAA 227
consensus_6683#2      ATTG-GTGTAGGT---ATAAGCG--TAGGTGAGTGCGCTA------AGTCCCTAGCGGGA 226
consensus_6683#1      ACTGTGCACGGTTTCGATTAACGTGT-GGCATATATGCTG-AGGTAAAACAAAAACACAT 294
                         * *    *     *  * *     **       * *       *             

consensus_6683#0      AGGCAACGTAAATATTACCAGCCTCTAGTGTGATAAGTCATTGCTCATAAGGTGAACCAG 287
consensus_6683#2      ATTCGGAAGCAACAGAGTCAGGCAAGTATCGGTTANGT-ANAGTTTANGTG-TG---CAG 281
consensus_6683#1      ATTTCTAA--AGCAAACGCAAGCAAAGATCGAATGATCGGCAAT--AAGTAATTAGTGTG 350
                      *         *  *    **  *     *    *            *     *      *

consensus_6683#0      AAGGGGAGTGGAAATACGTTTACAAACTACTAAAAACGTG-CGCTGGTTATGTATGTGCA 346
consensus_6683#2      CGGTGGTAAAGGCACACGGTAAGCACATATTACCAGCGCT-CG-TAGCTGCTGAACTNCA 339
consensus_6683#1      GGAGGGGAGGGGCAGACAAAAAAAAAACAACACTAATACAATAACACTAAGCCAACAGCA 410
                          **    *  * **    *  *   *  *  *                  *    **

consensus_6683#0      CGTTCGAAATCGATCTCC--ACCACAACGGTGTTGGATGATACGACGCCGTATATGTGTT 404
consensus_6683#2      CGCTC--AGTTG--CNTC--ACTTANAGGCTG--GGACNAAGGAACG------------- 378
consensus_6683#1      ACCTT--CCTTGGACTGTGAAACAACAAGATATGATACAATAAACAGTAGTAATTATTAC 468
                         *     * *  *     *     * * *     *  *      *             

consensus_6683#0      CGATTAGGTTTCGTTTTGTCTTGTCGTGAAAGCGCGCTGCCTTCAAAAGGGCAAAGTTTG 464
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      GTGTTTTGCTCACGAGCACGAAAAA----------------------------------- 493
                                                                                  

consensus_6683#0      GGTGTGCTATAACACCGTCGATACGCAAGTAAGACATGTTGTAAAACAAGGAGCGAGTTA 524
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------------
                                                                                  

consensus_6683#0      ACTGAGGAACTGAGGAACTAAAGCGTCTTTAGGTGTTTTGTGTTGGCAAAATGTCGAAAT 584
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------------
                                                                                  

consensus_6683#0      GGGTTTTGTGCAGGATTTTATTTCTTTTCAAAAGATGCGGCTTAGTTTCGATCTTACTGT 644
consensus_6683#2      ------------------------------------------------------------
consensus_6683#1      ------------------------------------------------------------
                                                                                  

consensus_6683#0      GCACGGTTTCGATTAACGTGTGGCATATATGCTGAGGTAAAA 686
consensus_6683#2      ------------------------------------------
consensus_6683#1      ------------------------------------------