|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence
[GAGGCCAAGAATCCGCACGAGGCTGTTTTTTTTTTTTTTTTTTNCGCTTTTTTAATTGGTGGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTCTGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCAAAGCTTCCTTTAAACCTTTTTTTNTCTAAGAGGAAGTGTCGCTTCCATCGTAAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTTACGNNNTNGGTAACCCCCTAAAAGCAAATTCTAAGTCTAATGCCGGCGTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTAGGTTTGTTTGTCTGCTAATGCCTTTGCTCTGCACATTCAAGACCACCTTTTGCTAAGCCTTTTCGCGTCGTCACAATTGAATGTGCNAGGGTGAGCCACGGAAAGTTCAGGTGAAGCGCACTGAACAGCCAGACAGGGGGTTTCGAGNCGGATGTCACTCGCNCGGGCGNGAGNGGGGCAAACAGCGACAGACTGGCCTTTAANCAAGCGAATATCCTGGTCGGCCAAACAGGAAANCACAGAACAGCTAGCAGAGAAAGTCTTAACTGTNCTNACCAAGGCGATGGCAAGGGGGGGCATTCGCAACGGGTTAGGCCAGGAAGACTGGTTNCCCCTTGGGTTGANCAATCGNGNTTNACCCANTGCCGAACTGGTNGGAACGTCGCANTGNCAGCCCTTATGCCACCTTGGCGNANACTC]
[+] EMBL BX467895 [GAGGCCAAGAATCCGCACGAGGCTGTTTTTTTTTTTTTTTTTTNCGCTTTTTTAATTGGTGGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTCTGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCAAAGCTTCCTTTAAACCTTTTTTTNTCTAAGAGGAAGTGTCGCTTCCATCGTAAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTTACGNNNTNGGTAACCCCCTAAAAGCAAATTCTAAGTCTAATGCCGGCGTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTAGGTTTGTTTGTCTGCTAATGCCTTTGCTCTGCACATTCAAGACCACCTTTTGCTAAGCCTTTTCGCGTCGTCACAATTGAATGTGCNAGGGTGAGCCACGGAAAGTTCAGGTGAAGCGCACTGAACAGCCAGACAGGGGGTTTCGAGNCGGATGTCACTCGCNCGGGCGNGAGNGGGGCAAACAGCGACAGACTGGCCTTTAANCAAGCGAATATCCTGGTCGGCCAAACAGGAAANCACAGAACAGCTAGCAGAGAAAGTCTTAACTGTNCTNACCAAGGCGATGGCAAGGGGGGGCATTCGCAACGGGTTAGGCCAGGAAGACTGGTTNCCCCTTGGGTTGANCAATCGNGNTTNACCCANTGCCGAACTGGTNGGAACGTCGCANTGNCAGCCCTTATGCCACCTTGGCGNANACTC]
[+] EMBL AGA283999 [ TTTTTTTT GCTTTTTTAATTGGTGGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTCTGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCAAA CTTCCTTTAAACCTTTTTTTTTCTAAGAGGAAGTGTCGCTTCCATCGT AAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTT TTTTTTTGGTAACCCCCTAAAA CAAATTCCAA TCTAATGCCGGC TCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTTGGTTTGTTTGTCTGCCAATGCCTTTGCTCTGC ]
consensusID : consensus_6686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[TAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCCACACTTCCTTTAAACCTTTTTTTTCTAAGAGGAAGTGTCGCTTCCATCGTAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCTTTTTTTTTGGTAACCCCCTAAAACAAATTCTAATCTAATGCCGGCTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTTGGTTTGTTTGTCCGCTAATGCCTTTGCTCTGCACATTCAAACCACCTTTTGCTAACCTTTTCGCTCGTCACAATTGAATGTGCAGTTAGCACGGAAAGTTAGGTAAGCGCACTGACAGCAGCGGGGTTTTTGATTATTTTTTTTTTTGCAAAAGCAAAATGGCTTAACAAGCGATATCTGGTCGCAAACAGAAACACAGAAAGCTAGAGAGAAATCTACTTCTACAGCATGCAGCGGCATGAAGGTAGCAGAAACTGTTCCCTGCTACATCGCTACCATGCCAACTGGTGAAATCATTTCCCTGTTCTCTGCCGACTCGCTGTCTCCTTCCCTTAAATCTAGTTCAACACTTACAACGACTTTAGGATAGCGGCTACCGTATTCTGGAAAGAATTCTGGGCTTCCACCCCGGACGCGTGGGCGG]
[-] EMBL BM601756 [TAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCCACACTTCCTTTAAACCTTTTTTTTCTAAGAGGAAGTGTCGCTTCCATCGTAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCTTTTTTTTTGGTAACCCCCTAAAACAAATTCTAATCTAATGCCGGCTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTTGGTTTGTTTGTCCGCTAATGCCTTTGCTCTGCACATTCAAACCACCTTTTGCTAACCTTTTCGCTCGTCACAATTGAATGTGCAGTTAGCACGGAAAGTTAGGTAAGCGCACTGACAGCAGCGGGGTTTTTGATTATTTTTTTTTTTGCAAAAGCAAAATGGCTTAACAAGCGATATCTGGTCGCAAACAGAAACACAGAAAGCTAGAGAGAAATCTACTTCTACAGCATGCAGCGGCATGAAGGTAGCAGAAACTGTTCCCTGCTACATCGCTACCATGCCAACTGGTGAAATCATTTCCCTGTTCTCTGCCGACTCGCTGTCTCCTTCCCTTAAATCTAGTTCAACACTTACAACGACTTTAGGATAGCGGCTACCGTATTCTGGAAAGAATTCTGGGCTTCCACCCCGGACGCGTGGGCGG]
consensusID : consensus_6686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence
[GAATCGCCACGAGGTGGANAGGTCGTTTTTGTATAGGACGCGTGGAGGAACGCTTGCAAACCAAACTGCAACCATTACCACCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGATGTCGTTACACTATAGTAGACAGAAGAAGAGAGAGAGTCAGAGAGTTAGAGAGCGAGAGAGAGAGGAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAAATGCAGTTTGACANTCGAACGAAAATAGGGCAACCGAAGCCGAAGCCGAATCGGAATAGCATTGGAGTTTTCGGGTCCGTTTTGTTCCCGTGTCCCGAAGAAAAGTGGGTGGAAGCCCAGAATTCTTTCCAGAATACGGTAGCCGCTATCCTACAGTCGTTGTAAGTGTTGAACTAGATTTAAGGGAAGGAGACAGCGAGTCGGCAGAGAACAGGGAA]
[+] EMBL BX466229 [GAATCGCCACGAGGTGGANAGGTCGTTTTTGTATAGGACGCGTGGAGGAACGCTTGCAAACCAAACTGCAACCATTACCACCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGATGTCGTTACACTATAGTAGACAGAAGAAGAGAGAGAGTCAGAGAGTTAGAGAGCGAGAGAGAGAGGAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAAATGCAGTTTGACANTCGAACGAAAATAGGGCAACCGAAGCCGAAGCCGAATCGGAATAGCATTGGAGTTTTCGGGTCCGTTTTGTTCCCGTGTCCCGAAGAAAAGTGG ]
[+] EMBL AGA285295 [ CCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGATGTCGTTACACTATAGTAGACAGAAG AGAGAGAGAGTCAGAGAGTTAGAGAGCGAGAGAGAGAGGAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAAATGCA TTTGACA TCGAACGAAAATAGGGCAACCGAA CCGAA CCGAATCGGAATAGCATTGGAGTTTTC GGTCC TTTT TTCCC TGTCCCGAAGAAAAGTGGGTGGAAGCCCAGAATTCTTTCCAGAATACGGTAGCCGCTATCCTACAGTCGTTGTAAGTGTTGAACTAGATTTAAGGGAAGGAGACAGCGAGTCGGCAGAGAACAGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6686#0 GAGGCCAAGAATCCGCACGAGGCTGTTTTTTTTTTTTTTTTTTNCGCTTTTTTAATTGGT 60
consensus_6686#1 ------------------------------------------------------------
consensus_6686#2 ------------------------------------------------------------
consensus_6686#0 GGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTC 120
consensus_6686#1 ------------------------------------------------------------
consensus_6686#2 ------------------------------------------------------------
consensus_6686#0 TGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAG 180
consensus_6686#1 ------------------------------------------------TAGAATCTCGAG 12
consensus_6686#2 ------------------------------------------------------------
consensus_6686#0 TAGTTGTATCCTATCCGACTCCCCAAAGCTTCCTTTAAACCTTTTTTTNTCTAAGAGGAA 240
consensus_6686#1 TAGTTGTATCCTATCCGACTCCCCCACACTTCCTTTAAACCTTTTTTTT-CTAAGAGGAA 71
consensus_6686#2 ------------------------------------------------------------
consensus_6686#0 GTGTCGCTTCCATCGTAAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCG 300
consensus_6686#1 GTGTCGCTTCCATCGTAA-GTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCG 130
consensus_6686#2 ------------------------------------------------------------
consensus_6686#0 CAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTTACGNNNTNGGTAACCCCCTA 360
consensus_6686#1 CAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCTTTT---TTTTTGGTAACCCCCTA 187
consensus_6686#2 -------------------------------------------------GAATCGCCACG 11
* * * **
consensus_6686#0 AAAGCAAATTCTAAGTCTAATGCCGGCGTCGACTGTGGAGCAATTGTGCTTTTCTTCATT 420
consensus_6686#1 AAA-CAAATTCTAA-TCTAATGCCGGC-TCGACTGTGGAGCAATTGTGCTTTTCTTCATT 244
consensus_6686#2 AGGTGGANAGGTCGTTTTTGTATAGGA--CG--CGTGGAGGAA---CGCTTG----CAAA 60
* * * * * * ** ** ****** ** **** **
consensus_6686#0 TTAGGTTTGTTTGTCTGCTAATGCCTTTGCTCTGCACATTCAAGACCACCTTTTGCTAAG 480
consensus_6686#1 TTTGGTTTGTTTGTCCGCTAATGCCTTTGCTCTGCACATTCAA-ACCACCTTTTGCTAA- 302
consensus_6686#2 CCAAACT---GCAACCATTACCACCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGA- 116
* * ** **** * * * * * * * *** * *
consensus_6686#0 CCTTTTCGCGTCGTCACAATTGAATGTGCNAGGGTGAGCCACGGAAAGTTCAGGTGAAGC 540
consensus_6686#1 CCTTTTCGC-TCGTCACAATTGAATGTGCA---GTTAGC-ACGGAAAGTT-AGGT-AAGC 355
consensus_6686#2 ---TGTCGTTACACTATAGTAGACAGAAGAAGAGAGAGAGTCAGAGAGTTAGAG---AGC 170
* *** * * * * ** * * ** * ** **** * ***
consensus_6686#0 GCACTGAACAGCCAGACAGGGGGTTTCGAGNCGGATGTCACTCGCNCGGGCGNGAGNGGG 600
consensus_6686#1 GCACTGA-CAGC---AGCGGGGTTTTTGATTATTTTTTTTTTTGCAAAAGC-AAAATGGC 410
consensus_6686#2 GAGAGAGAGAG-----GAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAA 225
* ** * * ** ** * ** * *
consensus_6686#0 GCAAACAGCGACAGACTGGCCTTTAANCAAG---CGAATATCCTGGTCGG--CCAAACAG 655
consensus_6686#1 TTAACAAGCGATAT-CTGGTCGCAAACAGAAACACAGAAAGCTAGAGAGAAATCTACTTC 469
consensus_6686#2 ATGCAGTTTGACAN-TCGAACGAAAATAGGGCAACCGAAGCCGAAGCCGA-----ATCGG 279
** * * * ** * * * * *
consensus_6686#0 GAAANCACAGAACAGCTAGCAG-----AGAAAGTCTTAACTGTNCTNACCAAGGCGATGG 710
consensus_6686#1 TACAGCATGCAGCGGCATGAAGGTAGCAGAAACTGTTCCCTG-CTACATCGCTACCATGC 528
consensus_6686#2 AATAGCATTGGA--GTTTTCGG----------GTCCGTTTTGTTCCCGT-GTCCCGAAGA 326
* * ** * * * ** * * *
consensus_6686#0 CAAGGGGGGGCATTCGCAACGGGTTAGGCCAGGAAGACTGGTTNCCCCTTGGGTTGANCA 770
consensus_6686#1 CAACTGGTGAAATCATTTCCCTGTT---CTCTGCCGACTCGCTGTCTCCTTCCCTTAA-- 583
consensus_6686#2 AAAGTGGGTGGA--AGCCCAGAATTCTTTCCAGAATAC-GGTAGCCGCTATCCTACAG-- 381
** ** * ** * ** * * * *
consensus_6686#0 ATCGNGNTTNACCCANTGCCGAACTGGTNGGAACGTCGCANTGNCAGCCCTTATGCCACC 830
consensus_6686#1 ATCTAGTTCAACAC-TTACAACGACTTTAGGATAGCGGCTACCGTATTCTGGAAAGAATT 642
consensus_6686#2 -TCGTTGTAAGTGTTGAACTAGATTTAAGGGAAGGAGACAGCG--AGTCGGCAGAGAACA 438
** * * *** * * * * * *
consensus_6686#0 TTGG-CGNANACTC--------------- 843
consensus_6686#1 CTGGGCTTCCACCCCGGACGCGTGGGCGG 671
consensus_6686#2 GGGAA------------------------ 443
*
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||