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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1024 fasta sequence
[CCGCTTTTCCCCCTTTGTACGCTTACCATCGGCGACCAACTCGAACGCAACCCAGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCTGAAAATCAAGCTATTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGATATCCCGGTCGGCG-TCTGGCGGGTCTGGCGACACTGACTTTGGTACCCCGGGCGGGACAGAGCTTTCTCTTCGGAATCGGTTTTAAACCTCCAATCCAATCTCGAACCATAGAGAGCCAAGTCAAACAAATGCCGGAACGAACGGTTGCCTGCTGCTAGTTGCCATTCAACTATGAATAGACGATAAGTCCAGCACTGCAGCAAAGCGGGTGTGGTGCCACAGCCGGAAAATGCAGTATTCTCTTT]
[+] EMBL BM642418 [CCGCTTTTCCCCCTTTGTACGCTTACCATCGGCGACCAACTCGAACGCAACCCAGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTA ]
[+] EMBL BX624431 [ GTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCTGAAAATCAAGCTATTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGATATCCCGGTCGGCG TCTGGCGGGTCTGGCGACACTGACTTTGGTAC ]
[+] EMBL BM641559 [ ccgGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACACACACATACAGACACAAACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCTGAAAATCAAGCTACTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGATATCCCGGTCGGCGCTC GGCGGGTCTGGCGACACTTACTTTGGTATCCCGGGCGGGACAGAGCTTTCTCTTCGGAATCGGTTTTAAACCTCCAATCCAATCTCGAACCATAGAGAGCCAAGTCAAACAAATGCCGGAACGAACGGTTGCCTGCTGCTAGTTGCCATTCAACTATGAATAGACGATAAGTCCAGCACTGCAGCAAAGCGGGTGTGGTGCCACAGCCGGAAAATGCAGTATTCTCTTT]
consensusID : consensus_6702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence
[CCGGTCGAACATTAACGGCGCCCAAATAACCACCAACCACACCCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACCTTATTCACAAGAGATGGAACATAGAAGAGAAGCATAAATGAACCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATG]
[+] EMBL BM633366 [CCGGTCGAACATTAACGGCGCCCAAATAACCACCAACCACACCCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACCTTATTCACAAGAGATGGAACATAGAAGAGAAGCATAAATGAACCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTTAAATGTACTTCAGTTTTA ]
[+] EMBL BM605591 [ ccGATGGAACATAGAAGAGAAGCATAAGGGTGCCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCA TTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATG]
consensusID : consensus_6702#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[CCGCGCCGTTAATGTTCGACATCAACAACAACAACAACCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACACGAAACACGAAACAAAGAAAAGAAATGATACGTGAAATCATCATCAATAACAACAAAAAAGCCATTCTTAGGAAGGGAAGCGAAGAAGAAAAAAAATAAAATCATTGATTTATTTAT]
[+] EMBL BM614822 [CCGCGCCGTTAATGTTCGACATCAACAACAACAACAACCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACACGAAACACGAAACAAAGAAAAGAAATGATACGTGAAATCATCATCAATAACAACAAAAAAGCCATTCTTAGGAAGGGAAGCGAAGAAGAAAAAAAATAAAATCATTGATTTATTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6702#0 ------------------------------------------------------------
consensus_6702#1 CCGGTCGAACATTAACGGCGCCCAAATAACCACCAACCACACCCAGCAGCAGCAGCAGCA 60
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 ------------------------------------------------------------
consensus_6702#1 AAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTG 120
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 ----------------------------------------------------------CC 2
consensus_6702#1 CGTACCAATAGAGGACCATTTGTAAGACAACCTTATTCACAAGAGATGGAACATAGAAGA 180
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 GCTTTTCCCCCTTTGTACGCTTACCATCGGC-GACCAACTCGAACGCAACCCA-GGACGA 60
consensus_6702#1 GAAGCATAAATGAACCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGA 240
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 CGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAG 120
consensus_6702#1 CGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAG 300
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 CGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGC 180
consensus_6702#1 CGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGC 360
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 CGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAG 240
consensus_6702#1 CGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAG 420
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 CCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGG 300
consensus_6702#1 CCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGG 480
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 GCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACA 360
consensus_6702#1 GCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACA 540
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 TGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTT-AAATGTA 419
consensus_6702#1 TGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTTAAATGTA 600
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 CTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCC 479
consensus_6702#1 CTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCC 660
consensus_6702#2 -------------------------------------------------------CCGCG 5
* *
consensus_6702#0 ATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACAC 539
consensus_6702#1 ATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACAC 720
consensus_6702#2 CCGTTAATGTTCGACATCAACAACAACAACAACCAGCAGCAGCAGCAGCAAAGGATGCAA 65
* * *** ** * ** * *** * ** * ** * * **
consensus_6702#0 ACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCAT 599
consensus_6702#1 ACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCAT 780
consensus_6702#2 AGTGCAACGGGCCCTGCCTCTCCCA-----ACTCACACTTATTTTTGTCACATTGCGTAC 120
* ** * * * * * * ** ** *** ** * * * * *
consensus_6702#0 AGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGG 659
consensus_6702#1 AGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATG---------- 830
consensus_6702#2 CAATAGAGGACCATTTGTAAGACAACAC----GAAACACGAA--ACAAAGAAAAGAAATG 174
** * * * * * ***** *** * ** **** * * *
consensus_6702#0 GTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCT 719
consensus_6702#1 ------------------------------------------------------------
consensus_6702#2 ATACGTGAAATCATCATCAATAACAA---CAAAAAAGCCATTCTTAGGAAGGGAAGCGAA 231
consensus_6702#0 GAAAATCAAGCTATTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGAT 779
consensus_6702#1 ------------------------------------------------------------
consensus_6702#2 GAAGAAAAAAAATAAAATCATTGATTTATTTAT--------------------------- 264
consensus_6702#0 ATCCCGGTCGGCGTCTGGCGGGTCTGGCGACACTGACTTTGGTACCCCGGGCGGGACAGA 839
consensus_6702#1 ------------------------------------------------------------
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 GCTTTCTCTTCGGAATCGGTTTTAAACCTCCAATCCAATCTCGAACCATAGAGAGCCAAG 899
consensus_6702#1 ------------------------------------------------------------
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 TCAAACAAATGCCGGAACGAACGGTTGCCTGCTGCTAGTTGCCATTCAACTATGAATAGA 959
consensus_6702#1 ------------------------------------------------------------
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 CGATAAGTCCAGCACTGCAGCAAAGCGGGTGTGGTGCCACAGCCGGAAAATGCAGTATTC 1019
consensus_6702#1 ------------------------------------------------------------
consensus_6702#2 ------------------------------------------------------------
consensus_6702#0 TCTTT 1024
consensus_6702#1 -----
consensus_6702#2 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||