These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1116 fasta sequence [CGCCATCTACATCACGCACGGATTGGCGTTCTACGTCGCGATAGACATCACCTGGAACGACTACCTGAAGAAGAACCTAGGTGACTCTCCACGAAGCGTCTTTTACGAGTACATCGCCCGAACGGTGCTGGTGTTAATCACATTCCTGCTAGCAGTGG-CATTCCCAATCTGGAACTGTTCATCTCGCTGTTCGGTGCCCTCTGTCTTTCTGCACTGGGCATTGCCTTCCCCGCGCTCATTGAAACCTGCACCTACTGGCACTATCGGAAGGGTATGGCCAAGGTGTGGATGGTTGTGAGGAACAGCGTTATCGGTGTGGTCGCTATACTGGGACTAGTGATCGGTACGTCGACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTTGCGCGGCTGTGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCAACATCCGCAACCAACATGAAGTATTGATTCGCCATCTTTTCACTCCATCATTACAAATAAGT-ATTATTCGACACGTAAACAGCGCACCTGGCGACAGGGAG-AAAGTGCACTTTTCAGCAGTAGCGTAGTGAGGGATGAACGAGAG-ACAGAGGGAGTGAGAGAGAAATGAGAGAAAGGC-ATAAATGACGCGTGTGAGG-AGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAGTCTAGGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTG---CTACTACTACTACTACAATCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGCTACCAGTCTGGCCGTCCATCTGCCCGCCAGCTGTTCGATCGTTACTGTCATATGTGCTTTTGTGTTTAAAAGTGTTGTTGTTCACACAATTTCATTCGATGTTTCCTATGATCGCAACGATCGCACCTGTGAAGCGGTGGATTACGCACAAGAAGCCCACCTGGACGAACGTATGTATCTGTAAGACTAGCTAAGCTAAGTGAAATGATCGAAACCGTAATTTGAAAACTTGTGTACATAGCGTAAGTGAAGCTGTAATAAACCCATATTTTNAACAAATTAAAAAAAATNNAAANACAAAGACAGCATTGC] [+] EMBL BX613602 [CGCCATCTACATCACGCACGGATTGGCGTTCTACGTCGCGATAGACATCACCTGGAACGACTACCTGAAGAAGAACCTAGGTGACTCTCCACGAAGCGTCTTTTACGAGTACATCGCCCGAACGGTGCTGGTGTTAATCACATTCCTGCTAGCAGTGG CATTCCCAATCTGGAACTGTTCATCTCGCTGTTCGGTGCCCTCTGTCTTTCTGCACTGGGCATTGCCTTCCCCGCGCTCATTGAAACCTGCACCTACTGGCACTATCGGAAGGGTATGGCCAAGGTGTGGATGGTTGTGAGGAACAGCGTTATCGGTGTGGTCGCTATACTGGGACTAGTGATCGGTACGTCGACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTTGCGCGGCTGTGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCAACATCCGCAACCAACATGAAGTATTGATTCGCCATCTTTTCACTCCATCATTACAAATAAGT ATTATTCGACACGTAAACAGCGCACCTGGCGACAGGGAG AAAGTGCACTTTTCAGCAGTAGCGTAGTGAGGGATGAACGAGAG ACAGAGGGAGTGAGAGAGAAATGAGAGAAAGGC ATAAATGACGCGTGTGAGG AGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAGTCTAGGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTG CTACTAATACTACTACAATCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGC ] [+] EMBL BX629093 [ AAGAAGAACCTAGGTGATTCTCCACGAAGCGTCTTTTACGAGTACATCGCCCGAACGGTGCTGGTGTTAATCACATTCCTGCTAGCAGTGGCCATTCCCAATCTGGAACTGTTCATCTCGCTGTTCGGTGCCCTCTGTCTTTCTGCACTGGGCATTGCCTTCCCCGCGCTCATTGAAACCTGCACCTACTGGCACTATCGGAAGGGTATGGCCAAGGTGTGGATGGTTGTGAGGAACAGCGTTATCGGTGTGGTCGCTATACTGGGACTAGTGATCGGTACGTCGACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTTGCGCGGCTGTGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCAACATCCGCAACCAACATGAAGTATTGATTCGCCATCTTTTCACTCCATCATTACAAATAAGT ATTATTCGACACGTAAACAGCGCACCTGGCGACAGGGAG AAAGTGCACTTTTCAGCAGTAGCGTAGTGAGGGATGAACGAGAG ACAGAGGGAGTGAGAGAGAAATGAGAGAAAGGC ATAAATGACGCGTGTGAGG AGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAGTCTAGGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTG CTACTACTACTACTACAATCATGCTGCTCCTGATCTCC ] [+] EMBL BM608708 [ ccgGACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTTGCGCGGCTGTGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCATCATCCGCAACCAACATGAAGTATTGATTCGCCATCTTTTCACTCCATCATTACAAATAAGT ATTATTCGACACGTAAACAGCGCACCTGGCGACAGGGAG AAAGTGCACTTTTCAGCAGTAGCGTAGTGAGGGATGAACGAGAG ACAGAGGGAGTGAGAGAGAAATGAGAGAAAGGC ATAAATGACGCGTGTGAGG AGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAGTCTAGGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTGTTACTACTACTACTACTACAACCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGCTACCAGTCTGGCCGTCCATCTGCCCGCCAGCTGTTCGATCGTTACTGTCATATGTGCTTTTGTGTTTAAAAGTGTTGTTGTTCACACAATTTCATTCGATGTTTCCTATGATCGCAACGATCGCACCTGTGAAGCGGTGGATTACGCACAAGAAGCCCACCTGGACGAACGTATGTATCTGTAAGACTAGCTAAGCTAAGTGAAATGATCGAAACCGTAATTTGAAAAC ] [-] EMBL BX466866 [ GCCATCTTTTCACTCCATCATTACTAATAAGTGATTATTCGACACGTAAACAGCGCACCTGGCGACAGGGAGCAAAGTGCACTTTTCAGCAGTAGCGTAGTGAGGGATGAACGAGAGCACAGAGCGAGTGAGAGAGAAATGAGAGAAAGGCTATAAATGACGCGTGTGAGGTAGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAGTNTATGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTG CTACTACTACTACTACAACCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGCTACCAGTCTGGCCGTCCATCTGCCCGCCAGCTGTTCGATCGTTACTGT ATATGTGCTTTTGTGTTT AAAGTGTTGTTGTTCACACAA TTCATTCGATGTTTCCTATGATCGCAACGATCGCAACTGTGAAGCGGTGGATTACGCACAAGAAGCCCACCTGGACGAACGTATGTATCTGTAAGACTAGCTAAGCTAAGTGAAATGATCGAAACTGTAATTTGAAAACTTGTGTACATAGCGTAAGTGAAGCTGTAATAAACCCATATTTTNAACAAATTAAAAAAAATNNAAANACAAAGACAGCATTGC] consensusID : consensus_6705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CCGCCCACGCGTCCGGTGAGGGATGAACGAGAGACAGAGCGAGTGAGAGAGAAATGAGAGAAAGGCATAAATGACGCGTGTGAGGAGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAGTCTATGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTGCTACTACTACTACTACAACCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGCTACCAGTCTGGCCGTCCATCTGCCCGCCAGCTGTTCGATCGTTACTGTCATATGTGCTTTTGTGTTTAAAGTGTTGTTGTTCACACAATTCATTCGATGTTTCCTATGATCGCAACGATCGCAACTGTGAAGCGGTGGATTACGCACAAGAAGCCCACCTGGACGAACGTATGTATCTGTAAGACTAGCTAAGCTAAGTGAAATGATCGAAACTGTAATTTGAAAACTTGTGTACATAGCGTAAGTGAAGCTGTAATAAACC] [+] EMBL BM589779 [CCGCCCACGCGTCCGGTGAGGGATGAACGAGAGACAGAGCGAGTGAGAGAGAAATGAGAGAAAGGCATAAATGACGCGTGTGAGGAGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAGTCTATGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTGCTACTACTACTACTACAACCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGCTACCAGTCTGGCCGTCCATCTGCCCGCCAGCTGTTCGATCGTTACTGTCATATGTGCTTTTGTGTTTAAAGTGTTGTTGTTCACACAATTCATTCGATGTTTCCTATGATCGCAACGATCGCAACTGTGAAGCGGTGGATTACGCACAAGAAGCCCACCTGGACGAACGTATGTATCTGTAAGACTAGCTAAGCTAAGTGAAATGATCGAAACTGTAATTTGAAAACTTGTGTACATAGCGTAAGTGAAGCTGTAATAAACC] consensusID : consensus_6705#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [TCGCCCCAGNTANGACTACTGAAGAAGAACTAAGTGATTCTCCACGAAGCGTCTTTTACGAGTACATCGCCCGAACGGTGCTGGTGTTAATCACATTCCTGCTAGCAGTGGCCATTCCCAATCTGGAACTGTTCATCTCGCTGTTCGGTGCCCTCTGTCTTTCTGCACTGGGCATTGCCTTCCCCGCGCTCATTGAAACCTGCACCTACTGGCACTATCGGAAGGGTATGGCCAAGGTGTGGATGGTTGTGAGGAACAGCGTTATCGGTGTGGTCGCTATACTGGGACTAGTGATCGGTACGTCGACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTTGCGCGGCTGTGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCAACATCCGCAACCAACATGAAAGTATTGATTCGCCATCTTTTCACTCCATCATTACAAATAAGTATTAT] [+] EMBL AL693801 [TCGCCCCAGNTANGACTACTGAAGAAGAACTAAGTGATTCTCCACGAAGCGTCTTTTACGAGTACATCGCCCGAACGGTGCTGGTGTTAATCACATTCCTGCTAGCAGTGGCCATTCCCAATCTGGAACTGTTCATCTCGCTGTTCGGTGCCCTCTGTCTTTCTGCACTGGGCATTGCCTTCCCCGCGCTCATTGAAACCTGCACCTACTGGCACTATCGGAAGGGTATGGCCAAGGTGTGGATGGTTGTGAGGAACAGCGTTATCGGTGTGGTCGCTATACTGGGACTAGTGATCGGTACGTCGACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTTGCGCGGCTGTGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCAACATCCGCAACCAACATGAAAGTATTGATTCGCCATCTTTTCACTCCATCATTACAAATAAGTATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6705#0 CGCCATCTACATCACGCACGGATTGGCGTTCTACGTCGCGATAGACATC-ACCTGGAACG 59 consensus_6705#2 ---------------------------------------------TCGC-CCCAGNTANG 14 consensus_6705#1 ---------------------------------------CCGCCCACGCGTCCGGTGAGG 21 * ** * * * consensus_6705#0 ACTACCTGAAGAAGAACCTAGGTGACTCTCCACGAAGCGTCTTTTACGAGTACATCGCCC 119 consensus_6705#2 ACTAC-TGAAGAAGAAC-TAAGTGATTCTCCACGAAGCGTCTTTTACGAGTACATCGCCC 72 consensus_6705#1 GATGAACGAGAGACAGAGCGAGTGAGAGAGAAATGAGAGAAAGGCATAAATGACGCGTGT 81 * ** * * **** * ** * * * * ** consensus_6705#0 GAACGGTGCTG----GTGTTAATCACATTCCTGCTAGCAGTGGC-ATTCCCAATCTGGAA 174 consensus_6705#2 GAACGGTGCTG----GTGTTAATCACATTCCTGCTAGCAGTGGCCATTCCCAATCTGGAA 128 consensus_6705#1 GAGGAGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGC-AGTGTGTTGAGGAGT 140 ** * * ** ****** *** * * * ** * * * consensus_6705#0 CTGTTCATCTCGCTGTTCGGTGCCCTCTGTCTTTCTGCACTGGGCATTGCCTTCCCCGCG 234 consensus_6705#2 CTGTTCATCTCGCTGTTCGGTGCCCTCTGTCTTTCTGCACTGGGCATTGCCTTCCCCGCG 188 consensus_6705#1 CTATGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTGCTACTACTACTACTACA 200 ** * ** * * ** * * * *** * * * * * * consensus_6705#0 CTCATTGAAACCTGCACCTACTGGCACTATCGGAAGGGTATGGCCAA-GGTGTGGATGGT 293 consensus_6705#2 CTCATTGAAACCTGCACCTACTGGCACTATCGGAAGGGTATGGCCAA-GGTGTGGATGGT 247 consensus_6705#1 ACCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGCTACCAGTCTGGCCGTC 260 *** * * ** *** * ** *** **** * ** *** * consensus_6705#0 TGTGAGG--AACAGCGTTATCGGTGTGGTCGCTATACTGGGACTAGTGATCGGTACGTCG 351 consensus_6705#2 TGTGAGG--AACAGCGTTATCGGTGTGGTCGCTATACTGGGACTAGTGATCGGTACGTCG 305 consensus_6705#1 CATCTGCCCGCCAGCTGTTCGATCGTTACTGTCATATGTGCTTTTGTGTTTAAAGTGTTG 320 * * **** * ** * *** * * *** * ** * consensus_6705#0 --ACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTT--GCGCGG 407 consensus_6705#2 --ACCAGCATGATCGAAATCATTCACACCTTCGGTCACGACGATTGAGGCTT--GCGCGG 361 consensus_6705#1 TTGTTCACACAATTCAT-TCGATGTTTCCTATGATCGCAACGATCGCAACTGTGAAGCGG 379 ** ** * ** * *** * ** * ***** * ** **** consensus_6705#0 CTG--TGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCAACATCCGCAACCAACAT 465 consensus_6705#2 CTG--TGTGCGCTAGCAATCAGCGCGCAGAGCAGCGAAAATCAACATCCGCAACCAACAT 419 consensus_6705#1 TGGATTACGCACAAGAAGCCCACCTGGACGAACGTATGTATCTGTAAGACTAGCTAAGCT 439 * * ** * ** * * * * * * *** * * * ** * consensus_6705#0 GAA-GTATTGATTCG--CCATCTTTTCACTCCATCATTACAAA---TAAGTATTATTCGA 519 consensus_6705#2 GAAAGTATTGATTCG--CCATCTTTTCACTCCATCATTACAAA---TAAGTATTAT---- 470 consensus_6705#1 AAGTGAAATGATCGAAACTGTAATTTGAAAACTTGTGTACATAGCGTAAGTGAAGCTGTA 499 * * * **** * * *** * * * **** * ***** consensus_6705#0 CACGTAAACAGCGCACCTGGCGACAGGGAGAAAGTGCACTTTTCAGCAGTAGCGTAGTGA 579 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ATAAACC----------------------------------------------------- 506 consensus_6705#0 GGGATGAACGAGAGACAGAGGGAGTGAGAGAGAAATGAGAGAAAGGCATAAATGACGCGT 639 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 GTGAGGAGAGATGTGAAATGTTAAAGCCATAACCATTCCTATGAGCAGTGTGTTGAGGAG 699 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 TCTAGGCAAAGTAAGGGGTAGCGCTCGGACTACTATTGCTGCTGCTACTACTACTACTAC 759 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 AATCATGCTGCTCCTGATCTCCTGATCTTGATGGCAGGCGGTGGCTACCAGTCTGGCCGT 819 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 CCATCTGCCCGCCAGCTGTTCGATCGTTACTGTCATATGTGCTTTTGTGTTTAAAAGTGT 879 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 TGTTGTTCACACAATTTCATTCGATGTTTCCTATGATCGCAACGATCGCACCTGTGAAGC 939 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 GGTGGATTACGCACAAGAAGCCCACCTGGACGAACGTATGTATCTGTAAGACTAGCTAAG 999 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 CTAAGTGAAATGATCGAAACCGTAATTTGAAAACTTGTGTACATAGCGTAAGTGAAGCTG 1059 consensus_6705#2 ------------------------------------------------------------ consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 TAATAAACCCATATTTTNAACAAATTAAAAAAAATNNAAANACAAAGACAGCATTGC 1116 consensus_6705#2 --------------------------------------------------------- consensus_6705#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||