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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence
[TGCAATCGTCGTTGGATTGTGGATTGTGTGCGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTTTTTTCACTTCTGCCGGGTGTGTGCGTGAGCAATGATAGTATATGTGATGTGTATCTCCCCTTTTTTTACAATGACTTTCTTCTTCGCATACAATTTAATTATCTTTTTTATAATATTTAGAATAACGAACCACCACAGAACACACACATACAAACGAATAACGAATTCATTGGCGGGAAGAAGTAACAGTACGAGGCACACTTTCACCCTCAGAAATGCACTTGCGATAATTGTGTAGCATCCTGATTGGACAAAATTTGGATTTAAGGAAGGACTCATTTTATTGTGCGCAACAAAAATAGATACACATTTCTGAACGGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCGGGGCGTGCGTATAGCGATTGTGTAAGAAAGCAAACAACCACTTAAATTAAGACAAGATTAGCGAGTAACATACGGTACCGTAACGTTAGGATTGGGCTGCGCTCCCAGGGGCGTCAGCAAATTACCTGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCTTCTAAAACACGGTTCAAATA]
[+] EMBL BX624200 [TGCAATCGTCGTTGGATTGTGGATTGTGTGCGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTTTTTTCACTTCTGCCGGGTGTGTGCGTGAGCAATGATAGTATATGTGATGTGTATCTCCCCTTTTTTTACAATGACTTTCTTCTTCGCATACAATTTAATTATCTTTTTTATAATATTTAGAATAACGAACCACCACAGAACACACACATACAAACGAATAACGAATTCATTGGCGGGAAGAAGTAACAGTACGAGGCACACTTTCACCCTCAGAAATGCACTTGCGATAATTGTGTAGCATCCTGATTGGACAAAATTTGGATTTAAGGAAGGACTCATTTTATTGTGCGCAACAAAAATAGATACACATTTCTGAACGGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCGGGGCGTGCGTATAGCGATTGTGTAAGAAAGCAAACAACCACTTAAATTAAGACAAGATTAGCGAGTAACATACGGTACCGTAACGTTAGGATTGGGCTGCGCTCCCAGGGGCGTCAGCAAATTACCTGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCTTCTAAAACACGGTTCAAATA]
[+] EMBL BM579975 [ ccgGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTT ACTTCTGCCGGGTGTGTGCGTGAGCAATGATAGAATATGTGATGTGTACCTCCCC TTTTTTACAATGACTTTCTTCTTCGCATACAATTTAATTCTCTTTTTTATAATATTTAGAATAACGAACCACCACAGAACACACACATACAAACGAATAACGAATTCATTGGCGGG AGAAGTAACAGTACGAGGCACACTTTCACCCTCAGAAATGCACTTGCGATAATTGTGTAGCATCCCTATTGGACAAAATTTGAATTTAAGGAAGGACTCATTTTATTGTGCGCAACAAATATAGATACACATTTCTGAACGGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCAGGGCGTGCGTATATCGATTGTGTAAGAAAGCAAGCAACCACTTAAATTAAGACAAGATTAGCGAGTAACATAAGGTACCGTAACTTTAGGATTGGGCTGCGCTCTCATGGGCGTCAGCAAATTACCTGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCT ]
consensusID : consensus_6706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence
[GCGAAGGGCTCAGCCGGCAGCACGTGCTGACGCGCATCGGCGTGATGTCGCTGATCCGCAAGAAGGTGCAGGAGTTTGAGCACATCAACGGGTACTACAGCATGCCGGAGCTGATCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGCTCCGGCTGCTGTTGGGGCGGCGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCTGCTGCTCCAGCCAGTGGAGAAACGTCCAAATCGGCCACGACGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCGCCCAGCCCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAGGCGACCGATGGCGGTGACAAAGAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAGCGAGAAAAGATGAGGAAGAGAAGGAGAGAATGGGGAAAGCGAAGGAGCGAAGAAAAAGAGAAAGAAAACAGCACGATAAGACGGGTCTTTAGTTGTCGTTGCCTTCCGCAGCCGATTTTCCGTTTGAAATCATTTCCACCGCAACAACAACGGGCCAGCGGCTGCCGGCAGCCAGTCGCACGGACCGG]
[+] EMBL BX623460 [GCGAAGGGCTCAGCCGGCAGCACGTGCTGACGCGCATCGGCGTGATGTCGCTGATCCGCAAGAAGGTGCAGGAGTTTGAGCACATCAACGGGTACTACAGCATGCCGGAGCTGATCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGCTCCGGCTGCTGTTGGGGCGGCGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCTGCTGCTCCAGCCAGTGGAGAAACGTCCAAATCGGCCACGACGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCGCCCAGCCCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAGGCGACCGATGGCGGTGACAAAGAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAG ]
[-] EMBL BM623053 [ CGGAGCTGATCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGTTCCGGCTGCTGTTGGGGCGGCGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCACCTGCTCCAGCCAGTGGAGAAACGTCCAAATCGGCCACGACGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCACCCAGCCCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAGGCGACCGATGGCGGTGACAAAGAAAAGCCAACGGATGGCGGTAGTGGCACGACGCCGGCCGAGGAGGGCGAAAAAACGAGAAAAGATGAGGAAGAGAAGGAGAGAATGGGGAAAGCGAAGGAGCGAAGAAAAAGAGAAAGAAAACAGCACGATAAGACGGGTCTTTAGTTGTCGTTGCCTTCCGCAGCCGATTTTCCGTTTGAAATCATTTCCACCGCAACAACAACGGGCCAGCGGCTGCCGGCAGCCAGTCGCACGGACCGG]
consensusID : consensus_6706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[CCGGAAGTGAAGAAGGAAGTGAAAAAAAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAGCGGCTGAAGTGAAGAAGGAAGTGAAAGAGGAAGGGGCGGACGATGCGACCGACAAGAAGTCGGCGGGCGACAACAAGAAGGATGAAAGCAGCGGCGAGGTCTCAGCGAAGGATGAACCGATGGACACCGACGGGGAGAAGAAGGACGACAAGCAACCGTCCGGTGAGGAGGCGATCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGGTGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCGCCGGCCCCAGCACCAGCCACCACGACCACCACCACCACCACGATCGAT]
[+] EMBL BM582140 [CCGGAAGTGAAGAAGGAAGTGAAAAAAAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAGCGGCTGAAGTGAAGAAGGAAGTGAAAGAGGAAGGGGCGGACGATGCGACCGACAAGAAGTCGGCGGGCGACAACAAGAAGGATGAAAGCAGCGGCGAGGTCTCAGCGAAGGATGAACCGATGGACACCGACGGGGAGAAGAAGGACGACAAGCAACCGTCCGGTGAGGAGGCGATCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGGTGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCGCCGGCCCCAGCACCAGCCACCACGACCACCACCACCACCACGATCGAT]
consensusID : consensus_6706#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[TCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCCAGCCGACCAACTTCCCCAGCGGCGCCGGTGCGGCCGGTTCCAGCTCGTCCGGCAAGTAAAGGCGCTCTTCTTCGATTTGCCTGCATAACTGATATGATGCTGCTTCCCCTTGCTGCATCTATCAAGGGGCCACTGAAATCGCTATCAATTAGCTCTGGTGCAATCGTCGTTGGATTGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTACTTCTGCCGGGTGTGTGCGTGA]
[+] EMBL BX618589 [TCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCCAGCCGACCAACTTCCCCAGCGGCGCCGGTGCGGCCGGTTCCAGCTCGTCCGGCAAGTAAAGGCGCTCTTCTTCGATTTGCCTGCATAACTGATATGATGCTGCTTCCCCTTGCTGCATCTATCAAGGGGCCACTGAAATCGCTATCAATTAGCTCTGGTGCAATCGTCGTTGGATTGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTACTTCTGCCGGGTGTGTGCGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6706#2 CCGGAAGTGAAGAAGGAAGTGAAAAAAAAAAGCCAACGGACAGTGGTAATGGCACAACAC 60
consensus_6706#3 ------------------------------------------------------------
consensus_6706#0 ------------------------------------------------------------
consensus_6706#1 ------GCGAAGGGCTCAGCCGGCAGCACGTGCTGACGCGCATCGGCGTGATGTCGCTGA 54
consensus_6706#2 CGGCCGAGGAGGGCGAAAAAGCGGCTGAAGTGAAGAAGGAAGTGAAAGAGGAAGGGGCGG 120
consensus_6706#3 ------------------------------------------------------------
consensus_6706#0 --TGCAATCGTCGTTGGATTGTGGATTGTGTGCGTGTGTTTAGTAAGAGGCCAGTGTGGG 58
consensus_6706#1 TCCGCAAGAAGGTGCAGGAGTTTGAGCACATCAACGGGTACTACAGCATGCCGGAGCTGA 114
consensus_6706#2 ACGATGCGACCGACAAGAAGTCGGCGGGCGACAACAA--GAAGGATGAAAGCAGCGGCGA 178
consensus_6706#3 ------------------------------------------------------------
consensus_6706#0 ATAGTAAGGGAAAAGTTGTTTTTTTTTTTTTTCACTTCTGCCGGGTGTGTGCGTGAGCAA 118
consensus_6706#1 TCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGCTCCGGCTGCTGTTGGGGCGG 174
consensus_6706#2 GGTCTCAGCG-AAGGATGAACCGATGGACACCGACGGGGAGAAGAAGGACGACAAGCAAC 237
consensus_6706#3 ------------------------------------------------------------
consensus_6706#0 TGATAGTATA-TGTGATGTGTATCTCCCCTTTTTTTACAATGACTTTCTTCTTCGCATAC 177
consensus_6706#1 CGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCTGCTGCTCCAGCCAGTGGAGAAA 234
consensus_6706#2 CGTCCGGTGAGGAGGCGATCGATCTGAAGAGTGTCAAGACCGAGGAG-GATGCGGGTGCG 296
consensus_6706#3 ------------------TCGATCTGAAGAGTGTCAAGACCGAGGAG-GATGCGG----- 36
consensus_6706#0 AATTTAATTATCTTTTTTATAATATTTAGAATAACGAACCACCACAG-AACACACACATA 236
consensus_6706#1 CGTCCAAATCGGCCACGA-CGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCGCCCAGC 293
* ** * ** *
consensus_6706#2 GTAGCGCCGAAG---AAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAG---GAGAAGAAG 350
consensus_6706#3 -TAGCGCCGAAG---AAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAG---GAGAAGAAG 89
consensus_6706#0 CAAACGAATAAC---GAATTCATTGGCGGGAAGAAGTAACAGTACGAG---GCACACTTT 290
consensus_6706#1 CCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAG 353
* ** **** ** ** * * ** * *
consensus_6706#2 CCAGCGGACGGA-GCGGCGAAGAGCAGC--GCGGA-AGAGGCGAAG--AAAGCACCGGTG 404
consensus_6706#3 CCAGCGGACGGA-GCGGCGAAGAGCAGC--GCGGA-AGAGGCGAAG--AAAGCACCGGTG 143
consensus_6706#0 CACCCTCAGAAATGCACTTGCGATAATT--GTGTA-GCATCCTGAT--TGGACAAAATTT 345
consensus_6706#1 GCGACCGATGGCGGTGACAAAGAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCC 413
* * * ** * * * **
consensus_6706#2 GAAGCCAAGAAGGAGGCCGAGGAA---GAGGACGATGACGATGAGGTGAAGTTCGTGGA- 460
consensus_6706#3 GAAGCCAAGAAGGAGGCCGAGGAA---GAGGACGATGACGATGAGGTGAAGTTCGTGGA- 199
consensus_6706#0 GGATTTAAGGAAGGACTCATTTTAT-TGTGCGCAACAAAAATAGATACACATTTCTGAAC 404
consensus_6706#1 GAGGAGGGCGAAAAAGCGAGAAAAGATGAGGAAGAGAAGGAGAGAATGGGGAAAGCGAA- 472
* * * * * * * * * *
consensus_6706#2 -GGATGGCAGCACGCT--GCCGCCGGTGGTGAAGAAACAGG-AGCCGGAAACGAAGCCGG 516
consensus_6706#3 -GGATGGCAGCACGCT--GCCGCCGGTGGTGAAGAAACAGG-AGCCGGAAACGAAGCCGG 255
consensus_6706#0 GGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCGGGGCGTG 464
consensus_6706#1 -GGAGCGAAGAAAAAGAGAAAGAAAACAGCACGATAAGACGGGTCTTTAGTTGTCGTTGC 531
*** * ** * * * *
consensus_6706#2 C--GC--CGGCCC-CAGCACCAGC----CACCACGACCACCACCACCACCACGA-TCGAT 566
consensus_6706#3 CCAGC--CGACCAACTTCCCCAGCGG--CGCCGGTGCGGCCGGTTCCAGCTCGT-CCGGC 310
consensus_6706#0 CGTATAGCGATTGTGTAAGAAAGCAAACAACCACTTAAATTAAGACAAGATTAG-CGAGT 523
consensus_6706#1 CTTCC-GCAGCCGATTTTCCGTTTGA--AATCATTTCCACCGCAACAACAACGGGCCAGC 588
* * * * *
consensus_6706#2 ------------------------------------------------------------
consensus_6706#3 AAGTAAAGGCGCTCTT---CTTCGATTTGCCTGCATAACT-GATATGATGCTGCTTCCCC 366
consensus_6706#0 AACATACGGTACCGTAACGTTAGGATTGGGCTGCGCTCCCAGGGGCGTCAGCAAATTACC 583
consensus_6706#1 GGCTGCCGGCAGCCAGTCGCACGGACCGG------------------------------- 617
consensus_6706#2 ------------------------------------------------------------
consensus_6706#3 TTGCTGCATCTATCAAGGGGCCACTGAAATCGCTATCAATTAGCTCTGGTGCAATCGTCG 426
consensus_6706#0 TGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCTTCTAAAACACGGT 643
consensus_6706#1 ------------------------------------------------------------
consensus_6706#2 ------------------------------------------------------------
consensus_6706#3 TTGGATTGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTT 486
consensus_6706#0 TCAAATA----------------------------------------------------- 650
consensus_6706#1 ------------------------------------------------------------
consensus_6706#2 ----------------------------
consensus_6706#3 TTTTTACTTCTGCCGGGTGTGTGCGTGA 514
consensus_6706#0 ----------------------------
consensus_6706#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||