cluster # 6713

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Anopheles gambiae
cluster # 6713 cluster # 6713 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6713#0 length = 1344 sequences # 5

consensus_6713#1 length = 316 sequences # 1

consensusID : consensus_6713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1344
fasta sequence

                              [CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGCATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCGCACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACAGTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATGGCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACAGCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGGATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGCCGTGGCCGCCGCCCACGCGTCCGCGG]

[-] EMBL BM620369             [CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGCATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCGCACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACAGTTATGTTGGGTGCGAAAGAGAAAGGATAAAATAAATCGATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CNS08IM9             [                                                                                                                                             TTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGTGTGTTAAACAGTTATGTTGGGGGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGATCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTTCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAAAAGCTGTTCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTG                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BX620073             [                                                                                                                                                                                                                                                    AAGTACCAATAGTTTTTCTCTCTCCTCTAATCGATGTCTTTTTNGCGTGTGATACAGTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATGATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTACTACAAAGGAAACAGTTAGAGGAAAGGAATAGACACAAACAAAAAATCAAACAAACAGACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGAGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACGAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAGGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGA                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS08IM8             [                                                                                                                                                                                                                                                                                                                                                                                                                TGTGGGAATGAGGGACCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATT                                                                                                                                                                                                                                                                                 ]
[-] EMBL BM605977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACTTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATGGCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACAGCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGGATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGCCGTGGCCGCCGCCCACGCGTCCGCGG]




>consensus_6713#0
CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGC
ATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCG
CACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCA
CATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAA
GGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACA
GTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACAT
AATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTAC
TACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACC
AGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTG
GTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATC
TGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGC
TCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTG
TGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGA
ATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAA
CACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCAC
GCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTG
TGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGC
ATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATGGC
ACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACAGC
AGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAG
GACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGGAT
CGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGCCG
TGGCCGCCGCCCACGCGTCCGCGG

consensusID : consensus_6713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTATGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGATTGGATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGCAGCGCCCCCGTGAAAGCTGGCGCCCGCTGCACCGAGCCCACTGAGCAGTCCCGTGTTGACACTGCAGCTGTTCGGATGCGCACTGCCACCGGTCCAGAAGTCTCCAACGCCGGATGCACCGCCGAAACCACCGCCGCCACCGAGCGCGGACGACGACGAGTGCGACCGACTGGTACGTACC]

[-] EMBL BX614641             [AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTATGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGATTGGATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGCAGCGCCCCCGTGAAAGCTGGCGCCCGCTGCACCGAGCCCACTGAGCAGTCCCGTGTTGACACTGCAGCTGTTCGGATGCGCACTGCCACCGGTCCAGAAGTCTCCAACGCCGGATGCACCGCCGAAACCACCGCCGCCACCGAGCGCGGACGACGACGAGTGCGACCGACTGGTACGTACC]




>consensus_6713#1
AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTATG
CAGATCATCGCCGGTTTGTGACATTGTGCTTAGATTGGATCGTCGAAACGCTTCCTGGGC
GAAGAGTGATGACGCAGCGCCCCCGTGAAAGCTGGCGCCCGCTGCACCGAGCCCACTGAG
CAGTCCCGTGTTGACACTGCAGCTGTTCGGATGCGCACTGCCACCGGTCCAGAAGTCTCC
AACGCCGGATGCACCGCCGAAACCACCGCCGCCACCGAGCGCGGACGACGACGAGTGCGA
CCGACTGGTACGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6713#0      CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGC 60
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      ATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCG 120
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      CACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCA 180
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      CATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAA 240
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      GGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACA 300
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      GTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACAT 360
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      AATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTAC 420
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      TACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACC 480
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      AGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTG 540
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      GTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATC 600
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      TGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGC 660
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      TCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTG 720
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      TGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGG- 779
consensus_6713#1      -------------AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGT 47
                                   ***  * *   * *  **     **   *    ** **** ** ** 

consensus_6713#0      AATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCA 839
consensus_6713#1      AGTTGGGTGTATGCAGATCATC------GCCGGTTTGT-GACATTGT---GCTTAGATTG 97
                      * *  *   *******  *  *      ****   *** ** ** **    ***      

consensus_6713#0      ACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCA 899
consensus_6713#1      GATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGC--AGCGCCCCCGTGAAAGCTGG 155
                         *       ** *  *  *  ***    *** * **  ***      * *** **   

consensus_6713#0      CGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTC-GTGTACGAGCGAGATGC 958
consensus_6713#1      CGCC----CGCTGCACCGA-------GCCCACTGAGCAGTCCCGTGTTGACACTGCA-GC 203
                      ****    ** ** ***         ** *   * **  * * ****     *   * **

consensus_6713#0      TGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCA 1018
consensus_6713#1      TGTTCGGAT-GCGCACTGCCAC--CGGTCCAGAAGTCTCCAACGCCGGATGC-ACCGCCG 259
                      *** * * * ** *** * * *   * *    ***   *    ** *      * **** 

consensus_6713#0      GCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATG 1078
consensus_6713#1      AAACCACCGCCGCCACCGAGCGCG-GACG---ACGACGAGTGCGACCGAC-TGGTACGTA 314
                        *    * ********  * *** *  *   *** ***  ** * *  * * *    * 

consensus_6713#0      GCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACA 1138
consensus_6713#1      CC---------------------------------------------------------- 316
                       *                                                          

consensus_6713#0      GCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCC 1198
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      AGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGG 1258
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      ATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGC 1318
consensus_6713#1      ------------------------------------------------------------
                                                                                  

consensus_6713#0      CGTGGCCGCCGCCCACGCGTCCGCGG 1344
consensus_6713#1      --------------------------