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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1688 fasta sequence
[CCGCCCACGCGTCCGGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACGGATCAGCTAAAAAATGCGTTTGAAATCAGTGGCACACTGATCGATCGCATCGTAGCAGTGTGTCAAGGACCGAATGAGGCCAATCGCTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGG-CAACACAGGAGCCGTGGACATGAAGCGCAACGTTAGCAGCTCGGCCGTTAATATTCCACAACCTCCACCGCATATGTCACCGCCGTCAGCAACCGGAAACAGCCATCCATCGCGCAGCGGCACGTCCAGCATCGTGCAGCACATGTCGCAACACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACATCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCAGCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTACCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGANGCAGCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCTCGAGCTCGAAGGTGTCACCGACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTGCCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGACCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGGNTAAGCTGCAGATCGCCGAGGAGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGGCCAACACGACCTGCTGATGGAACCAAAAAGAAAAAAAAAACAAAAACAATCAACCAACTTTAACCGTTTGAGCATGTGACCCTTTAGTGAACTAACACTTTATTAACGANNTTCCAGTGGACGGCACCACACCACGGGANGACNGGAATTGTGCGATTATTTTCAACGAAAACAAGAGACGAT]
[+] EMBL BM606045 [CCGCCCACGCGTCCGGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACGGATCAGCTAAAAAATGCGTTTGAAATCAGTGGCACACTGATCGATCGCATCGTAGCAGTGTGTCAAGGACCGAATGAGGCCAATCGCTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGGCCAACACAGGAGCCGTGGACAT ]
[+] EMBL BX622102 [ CTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGG CAACACAGGAGCCGTGGACATGAAGCGCAACGTTAGCAGCTCGGCCGTTAATATTCCACAACCTCCACCGCATATGTCACCGCCGTCAGCAACCGGAAACAGCCATCCATCGCGCAGCGGCACGTCCAGCATCGTGCAGCACATGTCGCAACACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACATCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCAGCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTACCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGANGCAGCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCT ]
[+] EMBL BX618437 [ CACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACACCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTC ]
[+] EMBL BX625243 [ ACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACATCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCAGCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTACCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGAGGCAGCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCTCGAGCTCGAAGGTGTCACCGACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTGCCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGACCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGGNTAAGCTGCAGATCGCCG ]
[+] EMBL BX619894 [ ACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTGCCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGACCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGGTTAAGCTGCAGATCGCCGAGGAGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGGCCAACACGACCTGCTGATGGAACCAAAAAGAAAAAAAAAACAAAAACAATCAACCAACTTTAACCGTTTGAGCATGTGACCCTTTAGTGAACTAACACTTTATTAACGANNTTCCAGTGGACGGCACCACACCACGGGANGACNGGAATTGTGCGATTATTTTCAACGAAAACAAGAGACGAT]
consensusID : consensus_6714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[ATGATCGTGTTGGCAAGGTGTTTCTGTCGAATGCCCCAACGATGAAGAAAATACACCAATTCTACTGTGCAGCGCATCCCCGTGCCATAGTGATAGTGGATAAGTTTCGTGATGAGCTGAATGTGTTCATGGAAAAACAGGGTGCAGCTAAGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACCGGATCAGCTAAAAAATGCGTTTTGAAATCAGTGGCACACTGATCGATCG]
[+] EMBL BX625420 [ATGATCGTGTTGGCAAGGTGTTTCTGTCGAATGCCCCAACGATGAAGAAAATACACCAATTCTACTGTGCAGCGCATCCCCGTGCCATAGTGATAGTGGATAAGTTTCGTGATGAGCTGAATGTGTTCATGGAAAAACAGGGTGCAGCTAAGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACCGGATCAGCTAAAAAATGCGTTTTGAAATCAGTGGCACACTGATCGATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6714#0 ------------------------------------------------------------
consensus_6714#1 ATGATCGTGTTGGCAAGGTGTTTCTGTCGAATGCCCCAACGATGAAGAAAATACACCAAT 60
consensus_6714#0 ------------------------------------------------------------
consensus_6714#1 TCTACTGTGCAGCGCATCCCCGTGCCATAGTGATAGTGGATAAGTTTCGTGATGAGCTGA 120
consensus_6714#0 -----------------CCGCCCACGCGTCCGGCCAGGTCTGCTTGTGCTTACTACCGGT 43
consensus_6714#1 ATGTGTTCATGGAAAAACAGGGTGCA-GCTAAGCCAGGTCTGCTTGTGCTTACTACCGGT 179
* * * * ****************************
consensus_6714#0 CTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGC 103
consensus_6714#1 CTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGC 239
************************************************************
consensus_6714#0 CACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAG 163
consensus_6714#1 CACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAG 299
************************************************************
consensus_6714#0 GATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTA 223
consensus_6714#1 GATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTA 359
************************************************************
consensus_6714#0 ACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCAC 283
consensus_6714#1 ACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCAC 419
************************************************************
consensus_6714#0 ATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAG 343
consensus_6714#1 ATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAG 479
************************************************************
consensus_6714#0 ACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTT 403
consensus_6714#1 ACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTT 539
************************************************************
consensus_6714#0 CCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATAC-GGATCAGCTAAAAAATGCGTT 462
consensus_6714#1 CCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACCGGATCAGCTAAAAAATGCGTT 599
************************************** *********************
consensus_6714#0 T-GAAATCAGTGGCACACTGATCGATCGCATCGTAGCAGTGTGTCAAGGACCGAATGAGG 521
consensus_6714#1 TTGAAATCAGTGGCACACTGATCGATCG-------------------------------- 627
* **************************
consensus_6714#0 CCAATCGCTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGGCAACACAG 581
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GAGCCGTGGACATGAAGCGCAACGTTAGCAGCTCGGCCGTTAATATTCCACAACCTCCAC 641
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CGCATATGTCACCGCCGTCAGCAACCGGAAACAGCCATCCATCGCGCAGCGGCACGTCCA 701
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GCATCGTGCAGCACATGTCGCAACACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCT 761
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 ACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAA 821
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 AGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTC 881
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 TCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACA 941
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 TCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCA 1001
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTA 1061
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGANGCA 1121
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCTCGAGCTCGA 1181
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 AGGTGTCACCGACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTG 1241
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGA 1301
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGG 1361
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 NTAAGCTGCAGATCGCCGAGGAGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGG 1421
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GTCATCTGGAAACGTACGGGGCGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGG 1481
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GTCATCTGGAAACGTACGGGGCGGCCAACACGACCTGCTGATGGAACCAAAAAGAAAAAA 1541
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 AAAACAAAAACAATCAACCAACTTTAACCGTTTGAGCATGTGACCCTTTAGTGAACTAAC 1601
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 ACTTTATTAACGANNTTCCAGTGGACGGCACCACACCACGGGANGACNGGAATTGTGCGA 1661
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 TTATTTTCAACGAAAACAAGAGACGAT 1688
consensus_6714#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||