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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1043 fasta sequence
[CGCAAAAGCCTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCTTTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCTAAAAAAT-AACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACT-CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT-AACATCACGCCTGACTACATAGCAAATCT-AAAAAATATAATGTCATCGTTGAAGCCGT-CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT-AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAA-TTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATT-AACTGCTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTTCCGC]
[+] EMBL CNS08ZWE [CGCAAAAGCCTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCTTTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCTAAAAAATAAACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACT CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCTAAACATCACGCCTGACTACATAGCAAATCTAAAAAAATATAATGTCATCGTTGAAGCCGT CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATTAAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGAAAAATTTATCTTCCAGATAAA TTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACC ACACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGA ]
[+] EMBL CNS08FHQ [ CTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCTTTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCT AAAAT AACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT AACATCACGCCTGACTACATAGCAAATCT AAAAAATATAATGTCATCGTTGAAGCCGT CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAA TTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCAGCACCACACTATA ]
[-] EMBL CNS08FHR [ AAAT AACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGAACT CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT AACATCACGCCTGACTACATAGCAAATCT AAAAAATATAATGTCATCGTTGAAGCCGT CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGTACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAATTTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATT AACTGCTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTC ]
[-] EMBL CNS08ZWF [ CCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGAACT CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT AACATCACGCCTGACTACATAGCAAATCT AAAAAATATAATGTCATCGTTGAAGCCGTCCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAA TTTTAAATAAAGGGGGAAGTGTTGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATTAAACTGCTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTTCCGC]
consensusID : consensus_6715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTAAAATAACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATTTTTTGACGAACCATCGAATTCACCTAACATCACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCATCGTTGAAGCCGTCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATC]
[+] EMBL BM652375 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTAAAATAACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATTTTTTGACGAACCATCGAATTCACCTAACATCACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCATCGTTGAAGCCGTCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATC]
consensusID : consensus_6715#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[CCGCCCACGCGTCCGGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAATTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCACACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATAACTGCACTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTGACCGCTAAGCGC]
[+] EMBL BM626211 [CCGCCCACGCGTCCGGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAATTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCACACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATAACTGCACTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTGACCGCTAAGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6715#0 CGCAAAAGCCTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCT 60
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 TTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCTAAAAAATAACCACCGATCTCGG 120
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 AAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCT 180
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 TCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCT 240
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 AAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCAATAGTGTT 300
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 GCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTA 360
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 TGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCTAACAT 420
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 CACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCATCGTTGAAGCCGTCCCCCAC 480
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 ATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCA 540
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 TGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATT 600
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 ------------------------------------------------------------
consensus_6715#0 TAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGA 660
consensus_6715#2 -----------------------------------------CCGCCCACGCGTCCGGTGA 19
consensus_6715#1 -----CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTAA 55
* * * * *
consensus_6715#0 AATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAG 720
consensus_6715#2 AATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAG 79
consensus_6715#1 AATAACCACCGATC-TCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAA 114
*** *** ***** * ****** * * ** **** * ** *** *
consensus_6715#0 CACC--------ACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACC------ 766
consensus_6715#2 CACC--------ACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACC------ 125
consensus_6715#1 CGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCG 174
* * *** ** * ** * * * * * ***** **
consensus_6715#0 ----GACCCACTTGCGACTCGAA----CTGCCGTCCATCAGACGAGATATGGTAGGAAAA 818
consensus_6715#2 ----GACCCACTTGCGACTCGAA----CTGCCGTCCATCAGACGAGATATGGTAGGAAAA 177
consensus_6715#1 AAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGG 234
** ** * ** ** ** * * ** * * * ** ***
consensus_6715#0 TTTATCTTCCAG--------------ATAAATTTTAA-ATAAAGGGGGAAGT-GATGTGG 862
consensus_6715#2 TTTATCTTCCAG--------------ATAAATTTTAA-ATAAAGGGGGAAGT-GATGTGG 221
consensus_6715#1 AAGCACTCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAA 294
** *** ** * * ***** * ** * * **
consensus_6715#0 C--GTACCTCGCACGCAAGCTGCACCACACTATAGTTGC--------------GCTAATA 906
consensus_6715#2 C--GTACCTCGCACGCAAGCTGCACCACACTATAGTTGC--------------GCTAATA 265
consensus_6715#1 CCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATTTTTTGACGAAC 354
* ** * * * * ** ***** ** * * *
consensus_6715#0 CACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAAT---------C 957
consensus_6715#2 CACCACACCTGCGTTACACCACA-CTTGCGTTACACCGCATGCAAGCAAT---------C 315
consensus_6715#1 CATCGAATTCACCTAACATCACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCAT 414
** * * * * *** ** ** * * * * ** ** ***
consensus_6715#0 GGCTTAATTCGGTAATCGTACCGAACCGGATTAACTGC--TACCGTGCATCGGAAATAAA 1015
consensus_6715#2 GGCTTAATTCGGTAATCGTACCGAACCGGAT-AACTGCACTACCGTGCATCGGAAATAAA 374
consensus_6715#1 CGTTGAAGCCGTCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAAC 474
* * ** ** * * ****** * * * ** ** ** **
consensus_6715#0 ATATAAACGCTCTCTTTCAT---TTTT-CCGC---------------------------- 1043
consensus_6715#2 ATATAAACGCTCTCTTTCAT---TTTGACCGC-TAAGCGC-------------------- 410
consensus_6715#1 AACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCC 534
* **** * * *** *** ****
consensus_6715#0 ------------------------------------------------------------
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 CTCCTTATGATGGTCCATTTAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATA 594
consensus_6715#0 ------------------------------------------------------------
consensus_6715#2 ------------------------------------------------------------
consensus_6715#1 TCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATG 654
consensus_6715#0 --------------
consensus_6715#2 --------------
consensus_6715#1 ATGAGTCTCCGATC 668
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||