cluster # 6716

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Anopheles gambiae
cluster # 6716 cluster # 6716 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6716#0 length = 775 sequences # 2

consensus_6716#1 length = 734 sequences # 3
consensus_6716#2 length = 565 sequences # 1

consensusID : consensus_6716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 775
fasta sequence

                              [CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGAACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACACACACCGCACACTTACACACATGTACACACATATGGTTGAGTA-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAA]

[+] EMBL BM621071             [CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGAACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACACACACCGCACACTTACACACATGTACACACATATGGTTGAGTA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCA                                                                                                                             ]
[+] EMBL BM604017             [                                                                                                                               ccgCTTACACACATGTACACACATATGGTTGAGTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAGATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGGTTACTTCAACTTTCTTTGCTTCTATAGATTGAAAGAGAGAATGGCAGAGTGTATAAAGGTGTGAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAA]




>consensus_6716#0
CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGA
ACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACAC
ACACCGCACACTTACACACATGTACACACATATGGTTGAGTAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA
GATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGG
CGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTT
CATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAA
AAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACA
TAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAG
AGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGTAAAATGTTACA
GAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAA
TTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAA
AAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAA

consensusID : consensus_6716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 734
fasta sequence

                              [GGCAGATCGGCACGATGGTGTATTAGATCTCCGCATAT-ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG-----A--GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAATAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGGACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGACTTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT]

[+] EMBL BX467956             [GGCAGATCGGCACGATGGTGTATTAGATCTTTTCATATNCTATAA  ATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGGGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAATAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGGACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGACTTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT]
[+] EMBL BM597926             [                              CCGCATAT ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG     A  GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGA GAAATGTAATAAGACACGTGCGTTAAAGTGAAATTTTATAAATGCAAAGGAAATCAATGTTGAAACTAGCTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAACTCAC AACACAACAAGACGAAACAAGAGGAGAAACTAAGAGAACGACCGAGCAATTAATGAAATCGCACATTGG TTG ATAGGA CCTTTAATCATACGACTTTTAC TAC TAATTATCA CA CAACAACACAAActactac                ]
[+] EMBL BM577348             [                              CCGCATAT ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG     A  GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_6716#1
GGCAGATCGGCACGATGGTGTATTAGATCTCCGCATATATATAAATATATATTAATTAGA
GCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTG
AAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACT
TTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGA
AGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTAC
CACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATT
ATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACAC
AGACACTCCGTGAAACAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGT
TAAAGTGAAATTTAATAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAG
CAACAGAAATACTAACGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGA
GGAGAAAATAAGAGGACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACC
CTTTAATCATACGACTTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATAC
CAACTATTATTACT

consensusID : consensus_6716#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [CCGGGGAAACACACACACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTC]

[+] EMBL BM645516             [CCGGGGAAACACACACACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTC]




>consensus_6716#2
CCGGGGAAACACACACACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAG
AGAGAGAGAGAGAAAGAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGA
AAAAATCACGACAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAA
AGAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATT
TTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACA
CACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTG
CTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAAT
AAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCAC
ACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGC
AACACAACACGAGGCGCAACAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6716#0      CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGA 60
consensus_6716#2      ------------------------------------------------------------
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      ACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACAC 120
consensus_6716#2      ------------------------------------------------------------
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      ACACCGCACACTTACACACATGTACACACATATGGTTGAGTAGAGAGAGAGAGAGAGAGA 180
consensus_6716#2      ---------------------------------------------CCGGGGAAACACACA 15
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA 240
consensus_6716#2      CACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAA 75
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      GATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGG 300
consensus_6716#2      GAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGG 135
consensus_6716#1      ------------------------------------------------------------
                                                                                  

consensus_6716#0      CGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAA-----------TGGATATGTA 349
consensus_6716#2      CGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTA 195
consensus_6716#1      ---------------------------GGCAGATCGGCA-----------CGATGGTGTA 22
                                                  * ***     *            *    ****

consensus_6716#0      TTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 409
consensus_6716#2      TTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 255
consensus_6716#1      TTAGATCTCCGCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 82
                      ********   *************************************************

consensus_6716#0      AGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 469
consensus_6716#2      AGAATAGAGAAAAG-------AGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 308
consensus_6716#1      AGAATAGAGAAAAG-------AGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 135
                      **************       ***************************************

consensus_6716#0      CACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 529
consensus_6716#2      CACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 368
consensus_6716#1      CACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 195
                      ************* **********************************************

consensus_6716#0      GATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGT 589
consensus_6716#2      GGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGT 428
consensus_6716#1      GGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGT 255
                      * ************  * ********************************** *******

consensus_6716#0      AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 649
consensus_6716#2      AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 488
consensus_6716#1      AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 315
                      ************************************************************

consensus_6716#0      ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 709
consensus_6716#2      ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 548
consensus_6716#1      ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 375
                      ************************************************************

consensus_6716#0      ACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAA 769
consensus_6716#2      ACGAGGCGCAACAAGTC------------------------------------------- 565
consensus_6716#1      ACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAA 435
                      *********** ** **                                           

consensus_6716#0      CAATAA------------------------------------------------------ 775
consensus_6716#2      ------------------------------------------------------------
consensus_6716#1      CAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAA 495
                                                                                  

consensus_6716#0      ------------------------------------------------------------
consensus_6716#2      ------------------------------------------------------------
consensus_6716#1      TAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAA 555
                                                                                  

consensus_6716#0      ------------------------------------------------------------
consensus_6716#2      ------------------------------------------------------------
consensus_6716#1      CGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGG 615
                                                                                  

consensus_6716#0      ------------------------------------------------------------
consensus_6716#2      ------------------------------------------------------------
consensus_6716#1      ACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGAC 675
                                                                                  

consensus_6716#0      -----------------------------------------------------------
consensus_6716#2      -----------------------------------------------------------
consensus_6716#1      TTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT 734