cluster # 6760

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Anopheles gambiae
cluster # 6760 cluster # 6760 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6760#0 length = 664 sequences # 4

consensus_6760#1 length = 380 sequences # 1
consensus_6760#2 length = 281 sequences # 1

consensusID : consensus_6760#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 664
fasta sequence

                              [CCGACTAGTTCTGCCTTCGCTTCGGTGCGGATCATCACAACAACGCTTAGGCTTTAAAAAGTACGCAGGAGAGTTTAAAGTACGAACAAAATAATTAAAAGCCAGTTTTATTGAACATACGCAAACACACACAGTGATCGGCTACTGTGTTTTGTTAATACGGAGTGTGTGATTCCAGTGAAAAAGGAAAC--GAAAGGTTGTTTTGCTGAAGCTGCTGTCTACTGCTCCGACGAC----GTGT--GTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCACAACGGTGGTGGTAGTGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCACAGAACAACAAAAGAAGGAGAAAAAAGGCATCCAGCTTCAAGAACGGGACGGAGCCGAACGAGAAGAGGATAGTTCAGCAGATTGCTAGTTTTATTATTATTGCGTCGGAAATCGTCAACCACGCGTGTGTTGTTGTTGGTACCGCAAAGACACACCCTCTCCACTCCGCTCTACGCCAAACATCGCACGCAGCTCACCATGG-ACAACTTGCGAAATCTGTTCGGGCAAGTGT-CGGCCATGACGTCAATGAAGGCAACG]

[+] EMBL BM631415             [CCGACTAGTTCTGCCCTCGCTTCGGTGCGGATCATCACAACAACGCTTAGGCTTTAAAAAGTACGCAGGAGAGTTTAAAGTACGAACAAAATAATTAAAAGCCAGTTTTATTGAACATACGCAAACACACACAGTGATCGGCTACTGTGTTTTGTTAATACGGAGTGTGTGATTCCAGTGAAAAAGGAAAC  GAAAGGTTGTTTTGCTGAAGCTGCTGTCTACTGCTCCGACGAC    GTGT  GTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCACAACGGTGGTGGTAGTGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCACAGAACAACAAAAGAAGGAGAAAAAAGGCATCCAGCTTCAAGAACGGGACGGAGCCGAACGAGAAGAGGATAGTTCAGCAGATTGCTAGTTTTATTATTATTGCGTCGGAAATCGTCAACCACGCGTGTGTTGTTGTTGGTACCGCAAAGACACACCCTCTCCACTCCGCTCTACGCCAAACATCGCACGCAGCTCACCATGGCACAACTTGCGAAATCTGTTCGGGCAAGTGTCCGGCCATGACGT              ]
[+] EMBL BM581763             [    ccgGTTCTGCCTTCGCTTCGGTGCGGATCATCACAACAACGCTTAGGCTTTAAAAAGTACGCAAGAGAGTATAAAGTACGAACAAAATAATTAAAAGCCAGTTTTATTGAACATACGCAAACACACACAGTGATCGGCTACTGTGTTTTGTTAATACGGAGTGTGTGATTCCAGTGAAAAAGGAAACAAGAAAGGTTGTTTTGCTGAAGCTGCTGTCTACTGCTCCGACGACGGGTGTGTGCGTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCGCAACGGTGGTGGTAGAGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCACAGAACAACAAAAGAAGGAGAAAAAA ACATCCAGCTTCAAGAACGGGACCGAGCCGAACGAGAAGAGGATAGTTCAGCAGATTGCTAGTTTTATTATTATTGCGTCGGAAATCGTCAACCACGC AGTGTTGTTGTTGGTACCGCAAAGACACACCCTCTCCACTCCACACTACGCCAAACATAGCACGCAGTTTACCATGG ACAACTTGCGAAATCTGTTCGGGCAAGTGT CGGCCATGACGTCAAT          ]
[+] EMBL BM578305             [            ccgTTCGCTTCGGTGCGGATCATCACAACAACGCTTAGGCTTTAAAAAGTACGCAAGAGAGTATAAAGTACGAACAAAATAATTAAAAGCCAGTTTTATTGAACATACGCAAACACACACAGTGATCGGCTACTGTGTTTTGTTAATACGGAGTGTGTGATTCCAGTGAAAAAGGAAACAAGAAAGGTTGTTTTGCTGAAGCTGCTGTCTACTGCTCCGACGACGGGTGTGTGCGTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCGCAACGGTGGTGGTAGAGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCACAGAACAACAAAAGAAGGAGAAAAAA ACATCCAGCTTCAAGAACGGGACCGAGCCGAACGAGAAGAGGATAGTTCAGCAGATTGCTAGTTTTATTATTATTGCGTCGGAAATCGTCAACCACGC  GTGTTGTTGTTGGTACCGCAAAGACACACCCTCTCCACTCCACACTACGCCAAACATAGCACGCAGTTTACCATGG ACAACTTGCGAAATCTGTTCGGGCAAGTGT CGGCCATGACGTCAA           ]
[+] EMBL BM599814             [                                     ccgCAACGCTTAGGCTTTAAAAAGTACGCAGGAGAGTTTAAAGTACGAACAAAATAATTAAAAGCCAGTTTTATTGAACATACGCAAACACACACAGTGATCGGCTACTGTGTTTTGTTAATACGGAGTGTGTGATTCCAGTGAAAAAGGAAAC  GAAAGGTTGTTTTGCTGAAGCTGCTGTCTACTGCTCCGACGAC    GTGT  GTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCACAACGGTGGTGGTAGTGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCACAGAACAACAAAAGAAGGAGAAAAAAGGCATCCAGCTTCAAGAACGGGACGGAGCCGAACGAGAAGAGGATAGTTCAGCAGATTGCTAGTTTTATTATTATTGCGTCGGAAATCGTCAACCACGCGTGTGTTGTTGTTGGTACCGCAAAGACACACCCTCTCCACTCCGCTCTACGCCAAACATCGCACGCAGCTCACCATGG ACAACTTGCGAAATCTGTTCGGGCAAGTGT CGGCCATGACGTCAATGAAGGCAACG]




>consensus_6760#0
CCGACTAGTTCTGCCTTCGCTTCGGTGCGGATCATCACAACAACGCTTAGGCTTTAAAAA
GTACGCAGGAGAGTTTAAAGTACGAACAAAATAATTAAAAGCCAGTTTTATTGAACATAC
GCAAACACACACAGTGATCGGCTACTGTGTTTTGTTAATACGGAGTGTGTGATTCCAGTG
AAAAAGGAAACGAAAGGTTGTTTTGCTGAAGCTGCTGTCTACTGCTCCGACGACGTGTGT
GTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGG
GGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCACAACGGTG
GTGGTAGTGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCACAGAACAACAAAAGA
AGGAGAAAAAAGGCATCCAGCTTCAAGAACGGGACGGAGCCGAACGAGAAGAGGATAGTT
CAGCAGATTGCTAGTTTTATTATTATTGCGTCGGAAATCGTCAACCACGCGTGTGTTGTT
GTTGGTACCGCAAAGACACACCCTCTCCACTCCGCTCTACGCCAAACATCGCACGCAGCT
CACCATGGACAACTTGCGAAATCTGTTCGGGCAAGTGTCGGCCATGACGTCAATGAAGGC
AACG

consensusID : consensus_6760#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [CCGTTCCAGTTCTGCCTTCGCTTCGATGCGGATCATCACAACACAGAGGCTTTAAGTAAAAATACGCAGGAGAGTTTAAAGTGCGAACAAAATAATTAAAAGCCAGGTTTATTGAACATACGCAAACAACACACATAGTGATTGGCTACAACACCGTCTTGTTAATACGGAATATGTGATTCCAGTGAAAAAGGAAACAAGAAAGGTTGTTTTGTTGAAGCTGCTGTCTACTGCTCTGACGACGTGTGTGTGTGAGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGGGGGGGGAAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTTGTCTTCGTCCATCATACCCGCAACGGTGGTGGGT]

[+] EMBL BM588728             [CCGTTCCAGTTCTGCCTTCGCTTCGATGCGGATCATCACAACACAGAGGCTTTAAGTAAAAATACGCAGGAGAGTTTAAAGTGCGAACAAAATAATTAAAAGCCAGGTTTATTGAACATACGCAAACAACACACATAGTGATTGGCTACAACACCGTCTTGTTAATACGGAATATGTGATTCCAGTGAAAAAGGAAACAAGAAAGGTTGTTTTGTTGAAGCTGCTGTCTACTGCTCTGACGACGTGTGTGTGTGAGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGGGGGGGGAAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTTGTCTTCGTCCATCATACCCGCAACGGTGGTGGGT]




>consensus_6760#1
CCGTTCCAGTTCTGCCTTCGCTTCGATGCGGATCATCACAACACAGAGGCTTTAAGTAAA
AATACGCAGGAGAGTTTAAAGTGCGAACAAAATAATTAAAAGCCAGGTTTATTGAACATA
CGCAAACAACACACATAGTGATTGGCTACAACACCGTCTTGTTAATACGGAATATGTGAT
TCCAGTGAAAAAGGAAACAAGAAAGGTTGTTTTGTTGAAGCTGCTGTCTACTGCTCTGAC
GACGTGTGTGTGTGAGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGAT
AGGGGGGGGGAAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTTGTCTTCGTCCATCA
TACCCGCAACGGTGGTGGGT

consensusID : consensus_6760#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [GAATCGGCACGAGGGTAAAAAGGAAACGAAAGGTTGTTCTGCTGAAGCTGCTGTCTACTGCTCCGACGACGTGTGTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCACAACGGTGGTGGTAGTNGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCGACAGAACAACAAAAGAAGGAGAAAAAAGGCGATCCAGGC]

[+] EMBL BX469292             [GAATCGGCACGAGGGTAAAAAGGAAACGAAAGGTTGTTCTGCTGAAGCTGCTGTCTACTGCTCCGACGACGTGTGTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCATACCCACAACGGTGGTGGTAGTNGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCGACAGAACAACAAAAGAAGGAGAAAAAAGGCGATCCAGGC]




>consensus_6760#2
GAATCGGCACGAGGGTAAAAAGGAAACGAAAGGTTGTTCTGCTGAAGCTGCTGTCTACTG
CTCCGACGACGTGTGTGTGTGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAA
CCGATAGGTGGGGAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGAT
CATACCCACAACGGTGGTGGTAGTNGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAG
CGACAGAACAACAAAAGAAGGAGAAAAAAGGCGATCCAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6760#0      -----CCGACTAGTTCTGCCTTCGCTTCGGTGCGGATCATCACAACAACGCTTAGGCTTT 55
consensus_6760#2      ------------------------------------------------------------
consensus_6760#1      CCGTTCCAGTTCTGCCTTCGCTTCGATGCGGATCATCACAACACAGAGGCTTTAAGTAAA 60
                                                                                  

consensus_6760#0      AAAAAGTACGCAGGAGAGTTTAAAGTACGAACAAAATAATTAAAAGCCAGTTTTATTGAA 115
consensus_6760#2      ------------------------------------------------------------
consensus_6760#1      AATACGCAGGAGAGTTTAAAGTGCGAACAAAATAATTAAAAGCCAGGTTTATTGAACATA 120
                                                                                  

consensus_6760#0      CATACGCAAACACACACAGTGATCGGCTACTGTGTTTTGTTAATACGGAGTGT---GTGA 172
consensus_6760#2      -------------------------------------------------GAAT---CGGC 8
consensus_6760#1      CGCAAACAACACACATAGTGATTGGCTACAACACCGTCTTGTTAATACGGAATATGTGAT 180
                                                                       *  *       

consensus_6760#0      TTCCAGTGAAAAAGGAA-ACGAAAGGTTGTTTTGCTGAAGCTGCTGTCTACTGCTCCGAC 231
consensus_6760#2      ACGAGGGTAAAAAGGAA-ACGAAAGGTTGTTCTGCTGAAGCTGCTGTCTACTGCTCCGAC 67
consensus_6760#1      TCCAGTGAAAAAGGAAACAAGAAAGGTTGTTTTGTTGAAGCTGCTGTCTACTGCTCTGAC 240
                              **** * ** * *********** ** ********************* ***

consensus_6760#0      GACGTGTGTGTGTG--GCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGAT 289
consensus_6760#2      GACGTGTGTGTGTG--GCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGAT 125
consensus_6760#1      GACGTGTGTGTGTGAGGCTGGCTCGTTTTTTCTTGATAAACAAGAATCGCACAAACCGAT 300
                      **************  ********************************************

consensus_6760#0      AGGTGGGG---AGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCA 346
consensus_6760#2      AGGTGGGG---AGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTCGTCTTCGTCGATCA 182
consensus_6760#1      AGGGGGGGGGAAGGGGTCAGTACCTTCTGCTGTGCAGCCCGGATTTGTCTTCGTCCATCA 360
                      *** ****   ********************************** ********* ****

consensus_6760#0      TACCCACAACGGTGGTGGTAGTG-TGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGC- 404
consensus_6760#2      TACCCACAACGGTGGTGGTAGTNGTGTGGTCCAGCCGCAGCATCTTGCGCCGTCATAGCG 242
consensus_6760#1      TACCCGCAACGGTGGTGGGT---------------------------------------- 380
                      ***** ************                                          

consensus_6760#0      ACAGAACAACAAAAGAAGGAGAAAAAAGGC-ATCCAGCTTCAAGAACGGGACGGAGCCGA 463
consensus_6760#2      ACAGAACAACAAAAGAAGGAGAAAAAAGGCGATCCAGGC--------------------- 281
consensus_6760#1      ------------------------------------------------------------
                                                                                  

consensus_6760#0      ACGAGAAGAGGATAGTTCAGCAGATTGCTAGTTTTATTATTATTGCGTCGGAAATCGTCA 523
consensus_6760#2      ------------------------------------------------------------
consensus_6760#1      ------------------------------------------------------------
                                                                                  

consensus_6760#0      ACCACGCGTGTGTTGTTGTTGGTACCGCAAAGACACACCCTCTCCACTCCGCTCTACGCC 583
consensus_6760#2      ------------------------------------------------------------
consensus_6760#1      ------------------------------------------------------------
                                                                                  

consensus_6760#0      AAACATCGCACGCAGCTCACCATGGACAACTTGCGAAATCTGTTCGGGCAAGTGTCGGCC 643
consensus_6760#2      ------------------------------------------------------------
consensus_6760#1      ------------------------------------------------------------
                                                                                  

consensus_6760#0      ATGACGTCAATGAAGGCAACG 664
consensus_6760#2      ---------------------
consensus_6760#1      ---------------------