cluster # 6779

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Anopheles gambiae
cluster # 6779 cluster # 6779 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6779#0 length = 878 sequences # 4

consensus_6779#1 length = 512 sequences # 1
consensus_6779#2 length = 439 sequences # 1

consensusID : consensus_6779#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 878
fasta sequence

                              [CCGCCGAAATCGTTCCAGGAATCTCAAGATGGCGATCTGCCGTGACGGGTAACAGAAGCGGTGCCGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTAAGAAGGGCCTAGAGATTGAGAAACAAACAGC-AAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGTCGTTTGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACGGGTGTGTATGTGTTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAACCGCAAGGCAAACCCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCAACAACACAGAACGACCGCGGTCCCGAAAAGGAGCCCACACCCC]

[+] EMBL BM583706             [CCGCCGAAATCGTTCCAGGAATCTCAAGATGGCGATCTGCCGTGACGGGTAACAGAAGCGGTGCCGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTAAGAAGGGCCTAGAGATTGAGAAACAAACAGC AAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGT AACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATAC                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM629924             [                                                              ccgGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTAAGAAGGGCCTAGAGATTGAGAAACAAACAGCAAAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCG                                                                                                                                                                                                                                                        ]
[+] EMBL BM577427             [                                                                               ccgGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGAGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTGAGAAGGGGCTAGAGATTGAGAAACAAACAGC    AAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACGGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGTGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGTCGTTTGTG                                                                                                                                                                                                                    ]
[+] EMBL BX620129             [                                                                                                                                                                                                                                                                                                                     GCCTAGAGATTGAGAAACAAACAGC AAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCATACCCTGCCGCTGCTCTCCGTCGTTTGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACGGGTGTGTATGTGTTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAACCGCAAGGCAAACCCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCAACAACACAGAACGACCGCGGTCCCGAAAAGGAGCCCACACCCC]




>consensus_6779#0
CCGCCGAAATCGTTCCAGGAATCTCAAGATGGCGATCTGCCGTGACGGGTAACAGAAGCG
GTGCCGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCA
AAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGT
GTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAA
CGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCC
GTAAGAAGGGCCTAGAGATTGAGAAACAAACAGCAAAAAAAAAAAAGACCCGAGAAAGAA
AGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAA
GTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTG
CGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGACACACACAGTCACA
GCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTGGTGTTGT
GGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGTCG
TTTGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACGGGTGTG
TATGTGTTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAACCGCAAGGCAAACC
CTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCAACAAC
ACAGAACGACCGCGGTCCCGAAAAGGAGCCCACACCCC

consensusID : consensus_6779#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [CCCGAGGTTTAACACCCGTCCCGTGAGCCCCGTTTGGATTGTCCAATNTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCATTTGCGGTGTCTGTCAAACGACTGAAAACATACCTTAGCACACATACCACACACAGTCACAGGCACGCTCTCAATCACGTTCCAAAAACCAACAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGGTGACCCCGGTGGAGGGAGGCGGCGGTTGCGCACACCAGAACCCTGCGCTGCGTCCTCCCGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAAACGCAAGGAAACCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCACAACACAGGACGACTGCGGTCCCGAAAAGGAGCCCACACCCTC]

[+] EMBL AL694131             [CCCGAGGTTTAACACCCGTCCCGTGAGCCCCGTTTGGATTGTCCAATNTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCATTTGCGGTGTCTGTCAAACGACTGAAAACATACCTTAGCACACATACCACACACAGTCACAGGCACGCTCTCAATCACGTTCCAAAAACCAACAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGGTGACCCCGGTGGAGGGAGGCGGCGGTTGCGCACACCAGAACCCTGCGCTGCGTCCTCCCGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAAACGCAAGGAAACCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCACAACACAGGACGACTGCGGTCCCGAAAAGGAGCCCACACCCTC]




>consensus_6779#1
CCCGAGGTTTAACACCCGTCCCGTGAGCCCCGTTTGGATTGTCCAATNTCGTCAAGCAAG
GGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCATTTGCGGTGTCTGTCAAA
CGACTGAAAACATACCTTAGCACACATACCACACACAGTCACAGGCACGCTCTCAATCAC
GTTCCAAAAACCAACAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGGTGACCCCGGT
GGAGGGAGGCGGCGGTTGCGCACACCAGAACCCTGCGCTGCGTCCTCCCGTCGTTCGTGT
GGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACACGGGTGTGTATGT
ATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAAACGCAAGGAAACCTGTCC
GCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCACAACACAGGAC
GACTGCGGTCCCGAAAAGGAGCCCACACCCTC

consensusID : consensus_6779#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [AGAATCGCCACGAGGTNGTAAAAGCAGGGAAAGAATAAGAAACACCGTCCCGTTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTNAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACATATGCCACACACAGTCACAGGCACGGCTCTCAAGTCACGTTCCAAAACCACCAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACAGCACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAAGTCAAACGCA]

[+] EMBL BX469177             [AGAATCGCCACGAGGTNGTAAAAGCAGGGAAAGAATAAGAAACACCGTCCCGTTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTNAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACATATGCCACACACAGTCACAGGCACGGCTCTCAAGTCACGTTCCAAAACCACCAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACAGCACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAAGTCAAACGCA]




>consensus_6779#2
AGAATCGCCACGAGGTNGTAAAAGCAGGGAAAGAATAAGAAACACCGTCCCGTTGGAGCC
CCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTNAACGCGTGCCCGCAGCAGCAGC
AGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACAT
ATGCCACACACAGTCACAGGCACGGCTCTCAAGTCACGTTCCAAAACCACCAACGCGTGC
GTGTGTGTGTGTGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAG
ACCCTGCCGCTGCTCTCCGGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGA
AGCGACACAGCACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGT
TTTTCACAAGTCAAACGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6779#0      CCGCCGAAATCGTTCCAGGAATCTCAAGATGGCGATCTGCCGTGACGGGTAACAGAAGCG 60
consensus_6779#1      ------------------------------------------------------------
consensus_6779#2      ------------------------------------------------------------
                                                                                  

consensus_6779#0      GTGCCGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCA 120
consensus_6779#1      ------------------------------------------------------------
consensus_6779#2      ------------------------------------------------------------
                                                                                  

consensus_6779#0      AAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGT 180
consensus_6779#1      ------------------------------------------------------------
consensus_6779#2      ------------------------------------------------------------
                                                                                  

consensus_6779#0      GTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAA 240
consensus_6779#1      ------------------------------------------------------------
consensus_6779#2      ------------------------------------------------------------
                                                                                  

consensus_6779#0      CGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCC 300
consensus_6779#1      ------------------------------------------------------------
consensus_6779#2      ------------------------------------------------------------
                                                                                  

consensus_6779#0      GTAAGAAGGGCCTAGAGATTGAGAAACAAACAGCAAAAAAAAAAAAGACCCGAGAAAGAA 360
consensus_6779#1      ------------------------------------------------------------
consensus_6779#2      -------------------------------------------AGAATCGCCACGAGGTN 17
                                                                                  

consensus_6779#0      AGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAA 420
consensus_6779#1      -------------CCCGAGGTTTAACACCCGTCCCGTG-AGCCCCGTTTGGATTGTCCAA 46
consensus_6779#2      GTAAAAGCAGGGAAAGAATAAGAAACACCGTCCCGTTGGAGCCCCGTTTGGATCGTCCAA 77
                                       *     ******   **  ** ************** ******

consensus_6779#0      -GTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTT 479
consensus_6779#1      TNTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCC-ATTT 105
consensus_6779#2      -GTCGTCAAGCAAGGGAGTGTNAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTT 136
                        ******************* ********************************* ****

consensus_6779#0      GCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGA-CACACACAGTCA 538
consensus_6779#1      GCGGTGTC-TGTCAAA-CGACTGAAAACATACCTTAGCACACATAC--CACACACAGTCA 161
consensus_6779#2      GCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACATATGCCACACACAGTCA 196
                      ******** ******* ***************** ******** *   ************

consensus_6779#0      CAG-CACG-CTCTCAA-TCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTG-- 593
consensus_6779#1      CAGGCACG-CTCTCAA-TCACGTTCCAAAAACCAACAACGCGTGCGTGTGTGTGTGTGTG 219
consensus_6779#2      CAGGCACGGCTCTCAAGTCACGTTCCAAAA-CCACCAACGCGTGCGTGTGTGTGTGTGTG 255
                      *** **** ******* ****** ****** *** ******************* ***  

consensus_6779#0      GTGTTGTGGG-TGACCCGGGTGGAGGGAGGCG-CG--TGCGCACACCAGACCCTGCCGCT 649
consensus_6779#1      GTGTTGTGGGGTGACCCCGGTGGAGGGAGGCGGCGGTTGCGCACACCAGAACCCTGCGCT 279
consensus_6779#2      GTGTTGTGGG-TGACCCGGGTGGAGGGAGGCG-CG--TGCGCACACCAGACCCTGCCGCT 311
                      ********** ****** ************** **  ************* **   ****

consensus_6779#0      GC---TCTCCGTCGTTTGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACA 706
consensus_6779#1      GCGTCCTCCCGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACA 339
consensus_6779#2      GC--TCTCCGGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACA 369
                      **      * ****** *******************************************

consensus_6779#0      -CACACAC--GGGTGTGTATGTGT-TGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAA 762
consensus_6779#1      -CACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAA 398
consensus_6779#2      GCACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAA 429
                       *******  ************ * ***********************************

consensus_6779#0      -TCAACCGCAAGGCAAACCCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGT 821
consensus_6779#1      -TCAAACGCAAGGAAA--CCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGT 455
consensus_6779#2      GTCAAACGCA-------------------------------------------------- 439
                       **** ****                                                  

consensus_6779#0      GCCAGTCGCGATCAACAACACAGAACGACCGCGGTCCCGAAAAGGAGCCCACACCCC- 878
consensus_6779#1      GCCAGTCGCGATCA-CAACACAGGACGACTGCGGTCCCGAAAAGGAGCCCACACCCTC 512
consensus_6779#2      ----------------------------------------------------------