cluster # 6780

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Anopheles gambiae
cluster # 6780 cluster # 6780 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6780#0 length = 727 sequences # 4

consensus_6780#1 length = 725 sequences # 2

consensusID : consensus_6780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 727
fasta sequence

                              [AATCGCACGAGGTTGNGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCG----AAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGNGCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGGTGAGCTATCTGAAGGGTGCACGGCTAGAGCGATGAAGGTCATCATCGACGCCAACACGGGTACGGGCGGGACGAAACCGTAGCAATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAAGTCATTGCCAAAAGCATCGCGACACGCAAATACATTGGGAGTAGTTAAATAGGCCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAAGGTGGTTTGGTGATATGTTTCAGTTGTTCTTTTTTCTGTTTTGTTTGGACGCAATAAATCCT]

[+] EMBL BX469778             [AATCGCACGAGGTTGNGTGCAGCAGTTCCTCTACACACTGTGGAGCTT ATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGNGCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGGTGAGCTATCTGAAGGGTGCACGGCTAGAGCGATGAAGGTCATCATCGACGCCAACACGGGTACGGGCGGGACGAAACCGTAGCAATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAAGTCATTGCCAAAAGCATCGCGACACGCAAATACATTGGGAGTAGTTAAATAGGCCACAGACCAAATACCATAGA                                                                                                         ]
[+] EMBL AL694132             [              gcGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX624903             [                   CAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCG    AAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX625862             [                       AGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCG    AAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTG CCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCAC GTGAGCTATCTGAAGGGTGCACGGCTAG GCGATGAA GTCATCATCGACGCCAACAC GGTACGGGCGGGACGAAACC TAGC ATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAA TCATTGCC AAAGCATCGC ACAC CAAATACATTGGAAGTAGTTAAATAGG CACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAAGGTGGTTTGGTGATATGTTTCAGTTGTTCTTTTTTCTGTTTTGTTTGGACGCAATAAATCCT]




>consensus_6780#0
AATCGCACGAGGTTGNGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGC
ACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTG
AAGTGATTTCGAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTG
TTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGACAGGTGTTTGCAGCAG
CTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAA
CATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGNGCACCATCGTAGACGTAGT
CACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCA
CGGTGAGCTATCTGAAGGGTGCACGGCTAGAGCGATGAAGGTCATCATCGACGCCAACAC
GGGTACGGGCGGGACGAAACCGTAGCAATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGA
TAACTCAAGTCATTGCCAAAAGCATCGCGACACGCAAATACATTGGGAGTAGTTAAATAG
GCCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAA
AAAAAGGTGGTTTGGTGATATGTTTCAGTTGTTCTTTTTTCTGTTTTGTTTGGACGCAAT
AAATCCT

consensusID : consensus_6780#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 725
fasta sequence

                              [CCTACTGNGACAGTAGCCAAACAAACAAAGTCCGTCGAGCGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGCCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGTGAGCTATCTGAAGGGTGCACGGCTAGGCGATGAAGTCATCATCGACGCCAACACGGTACGGGCGGGACGAAACCTAGCATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAATCATTGCCAAAGCATCGCACACCAAATACATTGNGAGTAGTTAAATAGGCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAGGTGGTTTGGTGATATGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CNS091PM             [CCTACTGNGACAGTAGCCAAACAAACAAAGTCCGTCGAGCGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGCCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGTGAGCTATCTGAAGGGTGCACGGCTAGGCGATGAAGTCATCATCGACGCCAACACGGTACGGGCGGGACGAAACCTAGCATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAATCATTGCCAAAGCATCGCACACCAAATACATTGNGAGTAGTTAAATAGGCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAGGTGGTTTGGTGATATGTTTCA                          ]
[-] EMBL CNS091PN             [                                                                                          ATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATTTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGCCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGTGAGCTATTTGAAGGGTGCACGGCTAGGCGATGAAGTCATCATCGACGCCAACACGGTACGGGCGGGACGAAACCTAGCATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAATCATTGCCAAAGCATCGCACACCAAATACATTGGGAGTAGTTAAATAGGCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAGGTGGTTTGGTGATA GTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6780#1
CCTACTGNGACAGTAGCCAAACAAACAAAGTCCGTCGAGCGTGCAGCAGTTCCTCTACAC
ACTGTGGAGCTTAATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGA
ACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAAT
GAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAA
CGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCAT
GGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTA
TACTGCCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAAC
GCCCGGCGTATCGGTGGACATTCACGTGAGCTATCTGAAGGGTGCACGGCTAGGCGATGA
AGTCATCATCGACGCCAACACGGTACGGGCGGGACGAAACCTAGCATTCCTGGAGTGTGA
GTTGCGCCACAAGAAAGATAACTCAATCATTGCCAAAGCATCGCACACCAAATACATTGN
GAGTAGTTAAATAGGCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAG
GTGGTAGAATAAAAAAAGGTGGTTTGGTGATATGTTTCAAAAAAAAAAAAAAAAAAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6780#0      ------------------AATCGCACGAGGTT------GNGTGCAGCAGTTCCTCTACAC 36
consensus_6780#1      CCTACTGNGACAGTAGCCAAACAAACAAAGTCCGTCGAGCGTGCAGCAGTTCCTCTACAC 60
                                        ** *  ** * **       * ********************

consensus_6780#0      ACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGA 96
consensus_6780#1      ACTGTGGAGCTTAATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGA 120
                      ********************* **************************************

consensus_6780#0      ACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCGAAAAAA-CGCACAATTCCCCACAAT 155
consensus_6780#1      ACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAAT 180
                      ************************ **************** ******************

consensus_6780#0      GAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAA 215
consensus_6780#1      GAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAA 240
                      ************************************************************

consensus_6780#0      CGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCAT 275
consensus_6780#1      CGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCAT 300
                      ********* **************************************************

consensus_6780#0      GGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTA 335
consensus_6780#1      GGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTA 360
                      ************************************************************

consensus_6780#0      TACTGNGCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAA 395
consensus_6780#1      TACTGC-CACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAA 419
                      *****  *****************************************************

consensus_6780#0      CGCCCGGCGTATCGGTGGACATTCACGGTGAGCTATCTGAAGGGTGCACGGCTAGAGCGA 455
consensus_6780#1      CGCCCGGCGTATCGGTGGACATTCACG-TGAGCTATCTGAAGGGTGCACGGCTAG-GCGA 477
                      *************************** *************************** ****

consensus_6780#0      TGAAGGTCATCATCGACGCCAACACGGGTACGGGCGGGACGAAACCGTAGCAATTCCTGG 515
consensus_6780#1      TGAAG-TCATCATCGACGCCAACACGG-TACGGGCGGGACGAAACC-TAGCA-TTCCTGG 533
                      ***** ********************* ****************** ***** *******

consensus_6780#0      AGTGTGAGTTGCGCCACAAGAAAGATAACTCAAGTCATTGCCAAAAGCATCGCGACACGC 575
consensus_6780#1      AGTGTGAGTTGCGCCACAAGAAAGATAACTCAA-TCATTGCCAAA-GCATCGC-ACAC-C 589
                      ********************************* *********** ******* **** *

consensus_6780#0      AAATACATTGGGAGTAGTTAAATAGGCCACAGACCAAATACCATAGAAATGGACATACAA 635
consensus_6780#1      AAATACATTGNGAGTAGTTAAATAGGC-ACAGACCAAATACCATAGAAATGGACATACAA 648
                      ********** **************** ********************************

consensus_6780#0      GCAGGGAAAGAGGTGGTAGAATAAAAAAAAGGTGGTTTGGTGATATGTTTCAGTTGTTCT 695
consensus_6780#1      GCAGGGAAAGAGGTGGTAGAATAAAAAAA-GGTGGTTTGGTGATATGTTTCAAAAAA--- 704
                      ***************************** **********************        

consensus_6780#0      TTTTTCTGTTTTGTTTGGACGCAATAAATCCT 727
consensus_6780#1      -------AAAAAAAAAAAAAAAAAAAAA---- 725
                                        *   ** ***