cluster # 6783

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6783 cluster # 6783 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6783#0 length = 734 sequences # 5

consensus_6783#1 length = 493 sequences # 1

consensusID : consensus_6783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 734
fasta sequence

                              [AATCGCACGAGGCCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG-AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGANATTANAAAACGTTTGAGATTGTAAT]

[+] EMBL BX466237             [AATCGCACGAGGTGAACAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATAT                                                                                                                                                                                                          ]
[+] EMBL BM621755             [ccgccCACGCGTCCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGTTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACGAAAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTA                                                                                                                                                                                                  ]
[+] EMBL BM588219             [            CCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTC                                           ]
[+] EMBL BX627777             [                         GCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGANATTANAAAACGTTTGAGATTGTAAT]
[+] EMBL BX626646             [                           TCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGAGA TAAAAAACGTTTGAGATTGTAA ]




>consensus_6783#0
AATCGCACGAGGCCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATAC
ATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATT
GTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGA
GCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAA
ACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATAT
CAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTA
AGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAG
CGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCAACCACCTGTGAGG
GCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTA
ATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCG
ATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACC
AATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGANATTANAAAACG
TTTGAGATTGTAAT

consensusID : consensus_6783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [CCCCGAGGTTATTACGACGCATCGCAAGCGAGAAAGCAGTTATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGTTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACAGACAGTGTGCTCAAGCACGAAGCGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCGACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCAGCAGATATCTACGTTAATGCGGATCTTCCACCGATTACTGGCAAGC]

[+] EMBL AL692873             [CCCCGAGGTTATTACGACGCATCGCAAGCGAGAAAGCAGTTATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGTTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACAGACAGTGTGCTCAAGCACGAAGCGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCGACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCAGCAGATATCTACGTTAATGCGGATCTTCCACCGATTACTGGCAAGC]




>consensus_6783#1
CCCCGAGGTTATTACGACGCATCGCAAGCGAGAAAGCAGTTATTGTTTGAAAATGAAATG
GACTGGGTGTTCGTTCGCTGTGTTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGG
TGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTC
TAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAG
TTGTGCAACGGGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTC
AGCGCCAACGGCGCCTCTACAGACAGTGTGCTCAAGCACGAAGCGTACTTTATACTGAAC
AGCGTAAAGACGAAAGCCGTTATCACTCCGACCACCTGTGAGGGCAGCGTGTGTCCGCTC
CAGGGTACGCAAGGACTTCTGTTCTCAGCAGATATCTACGTTAATGCGGATCTTCCACCG
ATTACTGGCAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6783#0      AATCGCACGAGGCCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATAC 60
consensus_6783#1      ------------------------------------------------------------
                                                                                  

consensus_6783#0      ATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATT 120
consensus_6783#1      ----------------CCCCGAGGTTATTACGACGCATCGCAAGCGAGAAAGCAGTTATT 44
                                           *  * ** *************************** ***

consensus_6783#0      GTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGA 180
consensus_6783#1      GTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGTTGTGCCTGATGTTCCTCTCGA 104
                      ************************************** *********************

consensus_6783#0      GCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAA 240
consensus_6783#1      GCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAA 164
                      ************************************************************

consensus_6783#0      ACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATAT 300
consensus_6783#1      ACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATAT 224
                      ************************************************************

consensus_6783#0      CAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTA 360
consensus_6783#1      CAATTAATCTGTCAAGTTGTGCAACGG-GCCCTGTACGATGCATCGTGGCACAAACGTTA 283
                      *************************** ********************************

consensus_6783#0      AGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAG 420
consensus_6783#1      AGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACAGACAGTGTGCTCAAGCACGAAG 343
                      ************************************* ***************** ****

consensus_6783#0      CGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCAACCACCTGTGAGG 480
consensus_6783#1      CGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCGACCACCTGTGAGG 403
                      ********************************************** *************

consensus_6783#0      GCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTA 540
consensus_6783#1      GCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCAGCAGATATCTACGTTA 463
                      ******************************************* ****************

consensus_6783#0      ATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCG 600
consensus_6783#1      ATGCGGATCTTCCACCGATTACTGGCAAGC------------------------------ 493
                      ********************* ********                              

consensus_6783#0      ATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACC 660
consensus_6783#1      ------------------------------------------------------------
                                                                                  

consensus_6783#0      AATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGANATTANAAAACG 720
consensus_6783#1      ------------------------------------------------------------
                                                                                  

consensus_6783#0      TTTGAGATTGTAAT 734
consensus_6783#1      --------------