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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence
[CCGCCCACGCGTCCGTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTCGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGG-CACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTCGAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGG-CCGTGAGTACGTGGTCGTGGCGCTCAACTACCCCGCCGTGAACGAGGTACACCGGAACGATGTCTTTACCGGGCGGCCGATAACTTCTTCATTCGCTTGCGAACGACTGGGGACACGACTGGGTGTAACCTGATACGGATGGTGCGCTACTGGGCGGCAGCATCGTAATTTNGTAACGCGCCACCTCCGGC]
[+] EMBL BM628968 [CCGCCCACGCGTCCGTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTCGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGG CACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTCGAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGG CCGTGAGTACGTGGTCGTGGCGCTCAACTACCCCGCCGTGAACGAGGTACAC ]
[+] EMBL AL693399 [ ccgaggttATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTTTATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGT GCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGACACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTG CCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTCGAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGGACCGTGAGTACGTGGTCGTGGCGCTCAACTAACCCGCCGTGAACGAGGTACACCGGAACGATGTCTTTACCGGGCGGCCGATAACTTCTTCATTCGCTTGCGAACGACTGGGGACACGACTGGGTGTAACCTGATACGGATGGTGCGCTACTGGGCGGCAGCATCGTAATTTNGTAACGCGCCACCTCCGGC]
consensusID : consensus_6785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCCNAGGTTATATGCGTACGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGCTAACTGTGGCCCTGTTGTGCACTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCACCATGGCTGCCCATAGTCGGAAACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACCAGATAAGGTGTTCGAGCTGCTCGGAAACCTACGAGGATGTGATCGGCTGAAACTTGGGTTCGCGAGTAACGTTGGTCGTGGGCGGCTCAAAGTACCCCGCGCGTGAAACGAGGGTACANCCGGGAACCGATTGGTTCTTTTAAACCGGGTTCCGGGCCCGGATTAAACTTTCTTTTCCATTTTCCGGCATTTTGCCTGAACCAGAATGGGGGTTACCACNGAACTTCCGGGGTTAACCCTGGCANTCGGGAACCGGGTTGGCGTTTCTGGGGCCGGGAAGGCATTCAGTAAACCTTTTGGTAACCCNGGCCCACCCCTTCCCGNGCAGGTCCAGAGGAGNTAACGGGCCAGGGCACACCCCTTAATTGCACGGTTGCCATGAATCCCAAGAAACAGGAGCCTTGGAACCGGAGCCTGNGATTCCGGATGGTGAT]
[+] EMBL AL692871 [CCCNAGGTTATATGCGTACGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGCTAACTGTGGCCCTGTTGTGCACTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCACCATGGCTGCCCATAGTCGGAAACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACCAGATAAGGTGTTCGAGCTGCTCGGAAACCTACGAGGATGTGATCGGCTGAAACTTGGGTTCGCGAGTAACGTTGGTCGTGGGCGGCTCAAAGTACCCCGCGCGTGAAACGAGGGTACANCCGGGAACCGATTGGTTCTTTTAAACCGGGTTCCGGGCCCGGATTAAACTTTCTTTTCCATTTTCCGGCATTTTGCCTGAACCAGAATGGGGGTTACCACNGAACTTCCGGGGTTAACCCTGGCANTCGGGAACCGGGTTGGCGTTTCTGGGGCCGGGAAGGCATTCAGTAAACCTTTTGGTAACCCNGGCCCACCCCTTCCCGNGCAGGTCCAGAGGAGNTAACGGGCCAGGGCACACCCCTTAATTGCACGGTTGCCATGAATCCCAAGAAACAGGAGCCTTGGAACCGGAGCCTGNGATTCCGGATGGTGAT]
consensusID : consensus_6785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence
[CCGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCGATAGCAGGAACGTGTGAACGCGTGGTCGGGTTGACTTCCGCCGTATCGCAGTCACACGGCTCGGCAGACCA]
[+] EMBL BM637773 [CCGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCGATAGCAGGAACGTGTGAACGCGTGGTCGGGTTGACTTCCGCCGTATCGCAGTCACACGGCTCGGCAGACCA]
[+] EMBL BX628990 [ TAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGGGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGCCTAACTGTGGCCCTGTTGTGCACTTATCCCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCGATAGCAGGAACGTGTGAACGCGTGGTCGGGTTGACTTCCGCCATATCGCAGGCACACGGCTCGGCAG ]
consensusID : consensus_6785#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[GGCACCANGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTAC]
[+] EMBL AL934551 [GGCACCANGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6785#2 ------CCGGTGCTC-TCGGGAAGTGCGGTTCGTTG-GTGAAGCAGTCCGAAACAGTGAC 52
consensus_6785#3 GGCACCANGGTGCTC-TCGGGAAGTGCGGTTCGTTG-GTGAAGCAGTCCGAAACAGTGAC 58
consensus_6785#0 -CCGCCCACGCGTCCGTCGGGAAGTGCGGTTCGTTG-GTGAAGCAGTCCGAAACAGTGAC 58
consensus_6785#1 ------CCCNAGGTTATATGCGTACGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAA 54
* * * * * * ** * ** ****** **** **
consensus_6785#2 AGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAAC-ACACCGTCCGGAAG 111
consensus_6785#3 AGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAAC-ACACCGTCCGGAAG 117
consensus_6785#0 AGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAAC-ACACCGTCCGGAAG 117
consensus_6785#1 TGTTCGCCATCCTTCT--CGGCTAACTGTGGCCCTGTTGTGCACTTATCTCATCAATGAA 112
* * ** ** **** * * * * ** **** * * ** *
consensus_6785#2 TTGAAGTGATC-GTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGA 170
consensus_6785#3 TTGAAGTGATC-GTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGA 176
consensus_6785#0 TTGAAGTGATC-GTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGA 176
consensus_6785#1 TTTCGTCGACCAGCCAACTATCCGCCGGGT-CACCATGGCTGCCCATAGTCGGAAACACC 171
** ** * * * * * * * ** ** * * * * * * *
consensus_6785#2 ACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAG--TAATCG- 227
consensus_6785#3 ACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAG--TAATCG- 233
consensus_6785#0 ACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAG--TAATCG- 233
consensus_6785#1 GTACATACGCAAGCTCGCCCGTCAGTACGGTGGACCAGATAAGGTGTTCGAGCTGCTCGG 231
* ** * * ** * * ** * ** * ** * ***
consensus_6785#2 ATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCA-ATTAATAGTCAAC 286
consensus_6785#3 ATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCA-ATTAATAGTCAAC 292
consensus_6785#0 ATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCA-ATTAATAGTCAAC 292
consensus_6785#1 AAACCTACGAGGATGTG-ATCGGCTGAAACTTGGGTTCGCGAGTAACGTTGGTCGTGGGC 290
* * * * ***** *** * *** * ** * * ** * ** *
consensus_6785#2 GGCACCCGGATCC----GTGTGAGCTGATCTCGCAGGCGTAAC-------GTTATGCAAC 335
consensus_6785#3 GGCACCCGGATCC----GTGTGAGCTGATCTCGCAGGCGTAAC-------GTTATGCAAC 341
consensus_6785#0 GGCACCCGGATCC----GTGTGAGCTGATCTCGCAGGCGTAAC-------GTTATGCAAC 341
consensus_6785#1 GGCTCAAAGTACCCCGCGCGTGAAACGAGGGTACANCCGGGAACCGATTGGTTCTTTTAA 350
*** * * ** * **** ** ** ** * *** * *
consensus_6785#2 GTCGTGTCTAAAGCC-GTACCGAAAT--------CAGCTGT-GCCGCGCGGTCCGATACA 385
consensus_6785#3 GTCGTGTCTAAAGCC-GTACCGAAAT--------CAGCTGT-GCCGCGCGGTCCGATACA 391
consensus_6785#0 GTCGTGTCTAAAGCC-GTACCGAAAT--------CAGCTGTCGCCGCGCGGTCCGATACA 392
consensus_6785#1 ACCGGGTTCCGGGCCCGGATTAAACTTTCTTTTCCATTTTCCGGCATTTTGCCTGAACCA 410
** ** *** * * ** * ** * * * * * ** **
consensus_6785#2 GA----GAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCA 441
consensus_6785#3 GA----GAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCA 447
consensus_6785#0 GA----GAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCA 448
consensus_6785#1 GAATGGGGGTTACCACNGAACTTCCGGGGTTAACCCTGGCANTCGGGAACCGGGTTGGCG 470
** * * * * **** ** * ** ***** * * * * *
consensus_6785#2 TCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCG 501
consensus_6785#3 TCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCA-TAGTCG 506
consensus_6785#0 TCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCCATAGTCG 508
consensus_6785#1 TTTCTGGGGCCGGGAAGGCATTCAGTAAACCTTTTGGTAACCCNGGCCCACCCCTTCCCG 530
* ** * ** ** * ** *** ** ** * **
consensus_6785#2 ATAGCAGGAACGTGTGAACGCGTGGTCGGGT-TGACTTCCGC------CGTATCGCAGTC 554
consensus_6785#3 GCAACAC-ACCGTACATACGCAAGCTCGCCCGTCAGTAC--------------------- 544
consensus_6785#0 GCAACAC-ACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTC 567
consensus_6785#1 NGCAGGTCCAGAGGAGNTAACGGGCCAGGGCACACCCCTTAA-----TTGCACGGTTGCC 585
* * *
consensus_6785#2 ACACGGCTCGGCAGACCA------------------------------------------ 572
consensus_6785#3 ------------------------------------------------------------
consensus_6785#0 GAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGGCCGTGAGTAC 627
consensus_6785#1 ATGAATCCCAAGAAACAGGAGCCTTGGAACCGGAGCCTGNGATTCCGGATGGTGAT---- 641
consensus_6785#2 ------------------------------------------------------------
consensus_6785#3 ------------------------------------------------------------
consensus_6785#0 GTGGTCGTGGCGCTCAACTACCCCGCCGTGAACGAGGTACACCGGAACGATGTCTTTACC 687
consensus_6785#1 ------------------------------------------------------------
consensus_6785#2 ------------------------------------------------------------
consensus_6785#3 ------------------------------------------------------------
consensus_6785#0 GGGCGGCCGATAACTTCTTCATTCGCTTGCGAACGACTGGGGACACGACTGGGTGTAACC 747
consensus_6785#1 ------------------------------------------------------------
consensus_6785#2 ------------------------------------------------------------
consensus_6785#3 ------------------------------------------------------------
consensus_6785#0 TGATACGGATGGTGCGCTACTGGGCGGCAGCATCGTAATTTNGTAACGCGCCACCTCCGG 807
consensus_6785#1 ------------------------------------------------------------
consensus_6785#2 -
consensus_6785#3 -
consensus_6785#0 C 808
consensus_6785#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||