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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1133 fasta sequence
[TTTGATAACACATGATCTGAAATCTTTATTGAGTTCATTTAGACTAGTGTTAAATCCCTGAAACTGAACCCGTCGCGTACTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTGACAAA-CCCGGCCGTGGGTATATTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTCTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTATTACTTAACACATTCCGCGCGTAATCCAGCACTTAGTTATCGATTGCCGACAAGCCGTA]
[+] EMBL CNS09NFS [TTTGATAACACATGATCTGAAATCTTTATTGAGTTCATTTAGACTAGTGTTAAATCCCTGAAACTGAACCCGTCGCGTACTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTGACAAA CCCGGCCGTGGGTATATTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTCTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGTTTCTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGG ]
[-] EMBL CNS09NFR [ ATTTGACAAACCCCGCCCGTGGGTATATTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTCTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTATTACTT ]
[-] EMBL BX604217 [ ATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTATTACTTAACACATTCCGCGCGTAATCCAGCACTTAGTTATCGATTGCCGACAAGCCGTA]
consensusID : consensus_6786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence
[CTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTCACAAAACCGGCCGTGGGTATGTTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTTTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTCGCCAAAAATCATCCGAAAGTCGCCACTGTAGCTGAGGTTTGAAATTGCCCGATACAGCTCAAACTCGGTAAACTTCTCCGGAAGCAGCAGCAACGCAGCATGCACCGCCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTCGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCA-ATACAGACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTGTATAAACTCGGGGATTCTG]
[-] EMBL BX609126 [CTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTCACAAAACCGGCCGTGGGTATGTTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTTTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTCGCCAAAAATCATCCGAAAGTCGCCACTGTAGCTGAGGTTTGAAATTGCCCGATACAGCTCAAACTCGGTAAACTTCTCCGGAAGCAGCAGCAACGCAGCATGCACCGCCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTCGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCA ATACAGACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAA ]
[-] EMBL AL692834 [ CAGCTCAAACTCGGTAAACTTCTCTGGAAGCAGCAGCAACGCAGCATGCACCGCCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGA CTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTGTATAAACTCGGGGATTCTG]
consensusID : consensus_6786#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[CGTCGCCACCTGTAGCTGAGGTTTGAAACTTGCCCGATACAGCTCAAACTCGGTAAACTTCTCTAGAAGCAGCAGCAACGCAGCATGCNACCGCTCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCATCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACGCACGTATATGAGATCGATCATACNCTCGTGCGGGAATTCTGCCTCG]
[-] EMBL BX468230 [CGTCGCCACCTGTAGCTGAGGTTTGAAACTTGCCCGATACAGCTCAAACTCGGTAAACTTCTCTAGAAGCAGCAGCAACGCAGCATGCNACCGCTCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCATCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACGCACGTATATGAGATCGATCATACNCTCGTGCGGGAATTCTGCCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6786#1 CTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTCAC 60
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 -----------------------------------------------------------T 1
consensus_6786#1 AAAACCGGCCGTGGGTATGTTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGA 120
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 TTGATAACACATGATCTGAAATCTTTATTGAGTTCATTTAGACTAGTGTTAAATCCCTGA 61
consensus_6786#1 ACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTAT 180
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 AACTGAACCCGTCGCGTACTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACT 121
consensus_6786#1 GTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGG 240
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 GTAGCGTACGGATTTGACAAACCCGGCCGTGGGTATATTTTTAATCGATTGCCAAACGCT 181
consensus_6786#1 CCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCA 300
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 ACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACG 241
consensus_6786#1 GATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGT 360
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 CGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTC 301
consensus_6786#1 GGCTGAATACAGGTTGCGAAAGTTTTCCAGCTGAGGCCGCACAATATTATTGACCTTGTC 420
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 GACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTC 361
consensus_6786#1 CTTGTTCTCGCCAAAAATCATCCGAAAGTCGCCAC-TGTAGCTGAGGTTTGAAA-TTGCC 478
consensus_6786#2 --------------------------CGTCGCCACCTGTAGCTGAGGTTTGAAACTTGCC 34
consensus_6786#0 CGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCC 421
***** * * * * * ***
consensus_6786#1 -CGATACAGCTCAAACTCGGTAAACTTCTCCGGAAGCAGCAGCAACGCAGCATGCA-CCG 536
consensus_6786#2 -CGATACAGCTCAAACTCGGTAAACTTCTCTAGAAGCAGCAGCAACGCAGCATGCNACCG 93
consensus_6786#0 ACGGAACTCCTCGAACGTGGCTGAATACA--GGTTGCGAAAGTTCTCCAGC-TGAGGCCG 478
** ** *** *** ** * * * * ** ** **** ** ***
consensus_6786#1 C-CGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTCGAGCTGGATGCGTTCCGTATG 595
consensus_6786#2 CTCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATG 153
consensus_6786#0 CACAA--TATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATG 536
* * * * ** ** ************ *********************
consensus_6786#1 ATCTCGACCGGCTTGTGCAGCCGTCCGGCCA-ATACAGACAGCGCCAATCCGTCAGGTCT 654
consensus_6786#2 ATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCT 213
consensus_6786#0 ATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCT 596
******************************* ***** **********************
consensus_6786#1 TCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATT 714
consensus_6786#2 TCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATT 273
consensus_6786#0 TCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATT 656
************************************************************
consensus_6786#1 TGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGC 774
consensus_6786#2 TGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGC 333
consensus_6786#0 TGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGC 716
************************************************************
consensus_6786#1 CCTCCGCCGAGCAGGCGCATGCTGGAATAGTGC-TCAAAGTTTTGGTCCAGATTTGCCGT 833
consensus_6786#2 CCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCATCAAAGTTTTGGTCCAGATTTGCCGT 393
consensus_6786#0 CCTCCGCCGAGCAGGCGCATGCTGGAATAGTGC-TCAAAGTTTTGGTCCAGATTTGCCGT 775
********************************* **************************
consensus_6786#1 GTGCCAGCGGTGTGCATTGTCTAC-CACGTATATGAGATCGATCATGTTGCGCTTCGAGC 892
consensus_6786#2 GTGCCAGCGGTGTGCATTGTCTACGCACGTATATGAGATCGATCATACNCTCGTGCGGGA 453
consensus_6786#0 GTGCCAGCGGTGTGCATTGTCTAC-CACGTATATGAGATCGATCATGTTGCGCTTCGAGC 834
************************ ********************* * ** *
consensus_6786#1 GAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAA 952
consensus_6786#2 ATTCTGCCTCG------------------------------------------------- 464
consensus_6786#0 GAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAA 894
* * ***
consensus_6786#1 AGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGA 1012
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 AGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGA 954
consensus_6786#1 GCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCAT 1072
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 GCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCAT 1014
consensus_6786#1 TCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTGTATAAACTCGGGGATTCTG 1132
consensus_6786#2 ------------------------------------------------------------
consensus_6786#0 TCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTA 1074
consensus_6786#1 -----------------------------------------------------------
consensus_6786#2 -----------------------------------------------------------
consensus_6786#0 TTACTTAACACATTCCGCGCGTAATCCAGCACTTAGTTATCGATTGCCGACAAGCCGTA 1133
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||